[med-svn] r5505 - in trunk/packages/bioruby/trunk/debian: . source

[Andreas Tille]

Author: tille
Date: 2010-11-25 15:36:24 +0000 (Thu, 25 Nov 2010)
New Revision: 5505

Added:
   trunk/packages/bioruby/trunk/debian/source/
   trunk/packages/bioruby/trunk/debian/source/format
Modified:
   trunk/packages/bioruby/trunk/debian/changelog
   trunk/packages/bioruby/trunk/debian/control
Log:
New upstream version


Modified: trunk/packages/bioruby/trunk/debian/changelog
===================================================================
--- trunk/packages/bioruby/trunk/debian/changelog	2010-11-25 15:02:16 UTC (rev 5504)
+++ trunk/packages/bioruby/trunk/debian/changelog	2010-11-25 15:36:24 UTC (rev 5505)
@@ -1,3 +1,16 @@
+bioruby (1.4.1-1) unstable; urgency=low
+
+  * New upstream version
+  * debian/control:
+    - Standards-Version: 3.9.1 (no changes needed)
+    - Added Recommends: hmmer, mafft, muscle, probcons, sim4, t-coffee
+      which are called in lib/bio/appl
+    - Added Suggests: clustalw (non-free), emboss (large and thus not
+      always wanted on the system just for BioRuby development)
+  * Source format 3.0 (quilt)
+
+ -- Andreas Tille <tille at debian.org>  Thu, 25 Nov 2010 16:04:31 +0100
+
 bioruby (1.4.0-2) unstable; urgency=low
 
   * Fixed long description

Modified: trunk/packages/bioruby/trunk/debian/control
===================================================================
--- trunk/packages/bioruby/trunk/debian/control	2010-11-25 15:02:16 UTC (rev 5504)
+++ trunk/packages/bioruby/trunk/debian/control	2010-11-25 15:36:24 UTC (rev 5505)
@@ -6,7 +6,7 @@
 DM-Upload-Allowed: yes
 Build-Depends: debhelper (>= 7.1), ruby
 Build-Depends-Indep: docbook-to-man, rdtool
-Standards-Version: 3.8.3
+Standards-Version: 3.9.1
 Homepage: http://www.bioruby.org
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/bioruby/?rev=0&sc=0
 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/bioruby/trunk/
@@ -14,7 +14,8 @@
 Package: libbio-ruby1.8
 Architecture: all
 Depends: ${shlibs:Depends}, ${misc:Depends}, libruby1.8
-Recommends: blast2, ruby1.8
+Recommends: ruby1.8, blast2, hmmer, mafft, muscle, probcons, sim4, t-coffee
+Suggests: clustalw, emboss
 Description: bioruby tools for computational molecular biology
  BioRuby project aims to implement an integrated environment for
  Bioinformatics with Ruby language. Design philosophy of the BioRuby library

Added: trunk/packages/bioruby/trunk/debian/source/format
===================================================================
--- trunk/packages/bioruby/trunk/debian/source/format	                        (rev 0)
+++ trunk/packages/bioruby/trunk/debian/source/format	2010-11-25 15:36:24 UTC (rev 5505)
@@ -0,0 +1 @@
+3.0 (quilt)