[med-svn] r6424 - trunk/packages/gbrowse/trunk/debian

[olivier sallou]

Author: osallou-guest
Date: 2011-04-01 15:29:26 +0000 (Fri, 01 Apr 2011)
New Revision: 6424

Added:
   trunk/packages/gbrowse/trunk/debian/gbrowse-calign.manpages
Modified:
   trunk/packages/gbrowse/trunk/debian/control
   trunk/packages/gbrowse/trunk/debian/rules
Log:
separate calign lib as a package as it not a requirement

Modified: trunk/packages/gbrowse/trunk/debian/control
===================================================================
--- trunk/packages/gbrowse/trunk/debian/control	2011-04-01 12:12:40 UTC (rev 6423)
+++ trunk/packages/gbrowse/trunk/debian/control	2011-04-01 15:29:26 UTC (rev 6424)
@@ -16,7 +16,7 @@
 Homepage: http://search.cpan.org/dist/GBrowse/
 
 Package: gbrowse
-Architecture: any
+Architecture: all
 Depends: ${misc:Depends}, ${perl:Depends}, ${shlibs:Depends},
  bioperl (>= 1.5.9), libbio-graphics-perl (>= 2.09),
  libcgi-session-perl (>= 4.02),
@@ -47,6 +47,15 @@
 
 Package: gbrowse-data
 Architecture: all
-Depends: ${misc:Depends},gbrowse
+Depends: ${misc:Depends}
+Recommends: gbrowse
 Description: Sample data to use GBrowse
- This package contains sample data to test the gbrowse tool.
+ This package contains sample data to test the gbrowse tool
+ with the Yeast genome.
+
+Package: gbrowse-calign
+Architecture: any
+Depends: ${misc:Depends}, gbrowse
+Description: CAlign helper
+ This package provides the CAlign helper
+ for use with Realign. It speeds up Smith-Waterman alignment.

Added: trunk/packages/gbrowse/trunk/debian/gbrowse-calign.manpages
===================================================================
--- trunk/packages/gbrowse/trunk/debian/gbrowse-calign.manpages	                        (rev 0)
+++ trunk/packages/gbrowse/trunk/debian/gbrowse-calign.manpages	2011-04-01 15:29:26 UTC (rev 6424)
@@ -0,0 +1 @@
+debian/gbrowse-calign/man/man3/Bio::Graphics::Browser2::CAlign.3pm

Modified: trunk/packages/gbrowse/trunk/debian/rules
===================================================================
--- trunk/packages/gbrowse/trunk/debian/rules	2011-04-01 12:12:40 UTC (rev 6423)
+++ trunk/packages/gbrowse/trunk/debian/rules	2011-04-01 15:29:26 UTC (rev 6424)
@@ -21,6 +21,13 @@
 	./Build  --install_base=debian/gbrowse install_slave
 	mkdir -p debian/gbrowse/usr/lib/perl5
 	mv debian/gbrowse/lib/perl5/*/* debian/gbrowse/usr/lib/perl5/
+	# Remove arch dependant data
+	mkdir -p debian/gbrowse-calign/usr/lib/perl5/auto/Bio/Graphics/Browser2/CAlign
+	mv debian/gbrowse/usr/lib/perl5/auto/Bio/Graphics/Browser2/CAlign/* debian/gbrowse-calign/usr/lib/perl5/auto/Bio/Graphics/Browser2/CAlign/
+	#rm -rf debian/gbrowse/usr/lib/perl5/auto/Bio/Graphics/Browser2/CAlign
+	mkdir -p debian/gbrowse-calign/usr/lib/perl5/Bio/Graphics/Browser2/
+	mv debian/gbrowse/usr/lib/perl5/Bio/Graphics/Browser2/CAlign.pm debian/gbrowse-calign/usr/lib/perl5/Bio/Graphics/Browser2/CAlign.pm
+	#rm -f debian/gbrowse/usr/lib/perl5/Bio/Graphics/Browser2/CAlign.pm
 	rm -rf debian/gbrowse/lib
 	rm -f debian/gbrowse/usr/share/doc/gbrowse/INSTALL
 	rm -f debian/gbrowse/usr/lib/perl5/auto/GBrowse/.packlist
@@ -43,13 +50,12 @@
 override_dh_installman:
 	#Rename due to perl extension seen as polish
 	rename 's/\.pl\.1p/\.1p/' debian/gbrowse/man/man1/*.pl.1p
+	mkdir -p debian/gbrowse-calign/man/man3/
+	mv debian/gbrowse/man/man3/Bio::Graphics::Browser2::CAlign.3pm debian/gbrowse-calign/man/man3/Bio::Graphics::Browser2::CAlign.3pm
 	dh_installman
 	rm -rf debian/gbrowse/man
 
 
-
-
-
 override_dh_auto_build-gbrowse-data:
 	#Skip