[med-svn] r6476 - trunk/packages/gbrowse/trunk/debian/patches

[Charles Plessy]

Author: plessy
Date: 2011-04-07 04:36:36 +0000 (Thu, 07 Apr 2011)
New Revision: 6476

Added:
   trunk/packages/gbrowse/trunk/debian/patches/manpages.patch
Modified:
   trunk/packages/gbrowse/trunk/debian/patches/debian-packaging-patch
   trunk/packages/gbrowse/trunk/debian/patches/series
Log:
Split patch in smaller units according to their purpose.

(To ease teh review of the packaging patch).


Modified: trunk/packages/gbrowse/trunk/debian/patches/debian-packaging-patch
===================================================================
--- trunk/packages/gbrowse/trunk/debian/patches/debian-packaging-patch	2011-04-07 04:33:53 UTC (rev 6475)
+++ trunk/packages/gbrowse/trunk/debian/patches/debian-packaging-patch	2011-04-07 04:36:36 UTC (rev 6476)
@@ -112,48 +112,6 @@
  # Short-Description: Start/Stop the gbrowse_slave rendering server.
  ### END INIT INFO
  
---- a/bin/gtf2gff3.pl
-+++ b/bin/gtf2gff3.pl
-@@ -1320,7 +1320,7 @@
- 
- =head1 NAME
- 
--gtf2gff3
-+gtf2gff3 - Converts GTF formatted files to valid GFF3 files
- 
- =head1 VERSION
- 
---- a/bin/wiggle2gff3.pl
-+++ b/bin/wiggle2gff3.pl
-@@ -2,7 +2,7 @@
- 
- =head1 NAME
- 
--wiggle2gff3.pl
-+wiggle2gff3.pl - Converts UCSC WIG format files into gff3 files
- 
- =head1 SYNOPSIS
- 
---- a/lib/Bio/DB/GFF/Aggregator/match_gap.pm
-+++ b/lib/Bio/DB/GFF/Aggregator/match_gap.pm
-@@ -34,7 +34,6 @@
- should be sufficient for simple nucleotide to nucleotide
- alignments.
- 
--################################################################################
- 
- =cut
- 
---- a/lib/Bio/DB/GFF/Aggregator/reftranscript.pm
-+++ b/lib/Bio/DB/GFF/Aggregator/reftranscript.pm
-@@ -1,6 +1,6 @@
- =head1 NAME
- 
--package Bio::DB::GFF::Aggregator::reftranscript -- Aggregates references transcripts
-+Bio::DB::GFF::Aggregator::reftranscript -- Aggregates references transcripts
- 
- =head1 SYNOPSIS
- 
 --- a/bin/gbrowse_metadb_config.pl
 +++ b/bin/gbrowse_metadb_config.pl
 @@ -21,7 +21,10 @@

Added: trunk/packages/gbrowse/trunk/debian/patches/manpages.patch
===================================================================
--- trunk/packages/gbrowse/trunk/debian/patches/manpages.patch	                        (rev 0)
+++ trunk/packages/gbrowse/trunk/debian/patches/manpages.patch	2011-04-07 04:36:36 UTC (rev 6476)
@@ -0,0 +1,43 @@
+Patch to correct POD-generated manual pages - Olivier Sallou - February 2011
+--- a/bin/gtf2gff3.pl
++++ b/bin/gtf2gff3.pl
+@@ -1320,7 +1320,7 @@
+ 
+ =head1 NAME
+ 
+-gtf2gff3
++gtf2gff3 - Converts GTF formatted files to valid GFF3 files
+ 
+ =head1 VERSION
+ 
+--- a/bin/wiggle2gff3.pl
++++ b/bin/wiggle2gff3.pl
+@@ -2,7 +2,7 @@
+ 
+ =head1 NAME
+ 
+-wiggle2gff3.pl
++wiggle2gff3.pl - Converts UCSC WIG format files into gff3 files
+ 
+ =head1 SYNOPSIS
+ 
+--- a/lib/Bio/DB/GFF/Aggregator/match_gap.pm
++++ b/lib/Bio/DB/GFF/Aggregator/match_gap.pm
+@@ -34,7 +34,6 @@
+ should be sufficient for simple nucleotide to nucleotide
+ alignments.
+ 
+-################################################################################
+ 
+ =cut
+ 
+--- a/lib/Bio/DB/GFF/Aggregator/reftranscript.pm
++++ b/lib/Bio/DB/GFF/Aggregator/reftranscript.pm
+@@ -1,6 +1,6 @@
+ =head1 NAME
+ 
+-package Bio::DB::GFF::Aggregator::reftranscript -- Aggregates references transcripts
++Bio::DB::GFF::Aggregator::reftranscript -- Aggregates references transcripts
+ 
+ =head1 SYNOPSIS
+ 

Modified: trunk/packages/gbrowse/trunk/debian/patches/series
===================================================================
--- trunk/packages/gbrowse/trunk/debian/patches/series	2011-04-07 04:33:53 UTC (rev 6475)
+++ trunk/packages/gbrowse/trunk/debian/patches/series	2011-04-07 04:36:36 UTC (rev 6476)
@@ -1 +1,2 @@
 debian-packaging-patch
+manpages.patch