[med-svn] r6490 - in trunk/packages/cdbfasta/trunk/debian: . patches

Timothy Booth tbooth-guest at alioth.debian.org
Fri Apr 8 17:23:09 UTC 2011 

Author: tbooth-guest
Date: 2011-04-08 17:23:08 +0000 (Fri, 08 Apr 2011)
New Revision: 6490

Added:
   trunk/packages/cdbfasta/trunk/debian/cdbfasta.dirs
   trunk/packages/cdbfasta/trunk/debian/cdbfasta.manpages
   trunk/packages/cdbfasta/trunk/debian/patches/
   trunk/packages/cdbfasta/trunk/debian/patches/add-install-target-to-makefile
   trunk/packages/cdbfasta/trunk/debian/patches/series
Removed:
   trunk/packages/cdbfasta/trunk/debian/cdbfasta.doc-base.EX
Modified:
   trunk/packages/cdbfasta/trunk/debian/changelog
   trunk/packages/cdbfasta/trunk/debian/control
   trunk/packages/cdbfasta/trunk/debian/copyright
Log:
Took stub package from Steffen and made something close to finished.
Need to confirm license terms - they are a bit vague.
Version numbering is a bit pants.


Added: trunk/packages/cdbfasta/trunk/debian/cdbfasta.dirs
===================================================================
--- trunk/packages/cdbfasta/trunk/debian/cdbfasta.dirs	                        (rev 0)
+++ trunk/packages/cdbfasta/trunk/debian/cdbfasta.dirs	2011-04-08 17:23:08 UTC (rev 6490)
@@ -0,0 +1 @@
+/usr/bin

Deleted: trunk/packages/cdbfasta/trunk/debian/cdbfasta.doc-base.EX
===================================================================
--- trunk/packages/cdbfasta/trunk/debian/cdbfasta.doc-base.EX	2011-04-08 16:01:39 UTC (rev 6489)
+++ trunk/packages/cdbfasta/trunk/debian/cdbfasta.doc-base.EX	2011-04-08 17:23:08 UTC (rev 6490)
@@ -1,20 +0,0 @@
-Document: cdbfasta
-Title: Debian cdbfasta Manual
-Author: <insert document author here>
-Abstract: This manual describes what cdbfasta is
- and how it can be used to
- manage online manuals on Debian systems.
-Section: unknown
-
-Format: debiandoc-sgml
-Files: /usr/share/doc/cdbfasta/cdbfasta.sgml.gz
-
-Format: postscript
-Files: /usr/share/doc/cdbfasta/cdbfasta.ps.gz
-
-Format: text
-Files: /usr/share/doc/cdbfasta/cdbfasta.text.gz
-
-Format: HTML
-Index: /usr/share/doc/cdbfasta/html/index.html
-Files: /usr/share/doc/cdbfasta/html/*.html

Added: trunk/packages/cdbfasta/trunk/debian/cdbfasta.manpages
===================================================================
--- trunk/packages/cdbfasta/trunk/debian/cdbfasta.manpages	                        (rev 0)
+++ trunk/packages/cdbfasta/trunk/debian/cdbfasta.manpages	2011-04-08 17:23:08 UTC (rev 6490)
@@ -0,0 +1,2 @@
+cdbfasta.1
+cdbyank.1

Modified: trunk/packages/cdbfasta/trunk/debian/changelog
===================================================================
--- trunk/packages/cdbfasta/trunk/debian/changelog	2011-04-08 16:01:39 UTC (rev 6489)
+++ trunk/packages/cdbfasta/trunk/debian/changelog	2011-04-08 17:23:08 UTC (rev 6490)
@@ -1,3 +1,10 @@
+cdbfasta (0.981-20100722-1ubuntu2) lucid; urgency=low
+
+  * Continued work on package - added basic manapages 
+  * Changed description in control file
+
+ -- Tim Booth <tbooth at ceh.ac.uk>  Fri, 08 Apr 2011 18:05:51 +0100
+
 cdbfasta (0.981-20100722-1) unstable; urgency=low
 
   * Initial release (Closes: #nnnn)

Modified: trunk/packages/cdbfasta/trunk/debian/control
===================================================================
--- trunk/packages/cdbfasta/trunk/debian/control	2011-04-08 16:01:39 UTC (rev 6489)
+++ trunk/packages/cdbfasta/trunk/debian/control	2011-04-08 17:23:08 UTC (rev 6490)
@@ -2,7 +2,7 @@
 Section: science
 Priority: extra
 Maintainer: Steffen Moeller <moeller at debian.org>
-Build-Depends: debhelper (>= 7.0.50~)
+Build-Depends: debhelper (>= 7.0.50~), help2man
 Standards-Version: 3.9.1
 Homepage: http://sourceforge.net/projects/cdbfasta/
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/cdbfasta/trunk/?rev=0&sc=0
@@ -11,6 +11,5 @@
 Package: cdbfasta
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}
-Description: Fasta file indexing and retrival tool
- The tool performs a suitable indexing of the result
- files from next generation sequencing machines.
+Description: Fasta file indexing and retrieval tool
+ Fast indexing and retrieval of fasta records from flat file databases

Modified: trunk/packages/cdbfasta/trunk/debian/copyright
===================================================================
--- trunk/packages/cdbfasta/trunk/debian/copyright	2011-04-08 16:01:39 UTC (rev 6489)
+++ trunk/packages/cdbfasta/trunk/debian/copyright	2011-04-08 17:23:08 UTC (rev 6490)
@@ -1,15 +1,16 @@
 This work was packaged for Debian by:
 
     Steffen Moeller <moeller at debian.org> on Thu, 02 Dec 2010 19:02:35 +0100
+    Tim Booth <tbooth at ceh.ac.uk> on Fri Apr  8 17:18:12 BST 2011
 
 It was downloaded from:
 
-    <url://example.com>
+    http://sourceforge.net/projects/cdbfasta/files/
 
 Upstream Author(s):
 
-    <put author's name and email here>
-    <likewise for another author>
+    Geo Pertea <geopartea at sourceforge.net>
+    Gene Indices Group <valduboisvert at sourceforge.net>
 
 Copyright:
 
@@ -18,7 +19,7 @@
 
 License:
 
-    <Put the license of the package here indented by 4 spaces>
+    Unknown
 
 The Debian packaging is:
 

Added: trunk/packages/cdbfasta/trunk/debian/patches/add-install-target-to-makefile
===================================================================
--- trunk/packages/cdbfasta/trunk/debian/patches/add-install-target-to-makefile	                        (rev 0)
+++ trunk/packages/cdbfasta/trunk/debian/patches/add-install-target-to-makefile	2011-04-08 17:23:08 UTC (rev 6490)
@@ -0,0 +1,31 @@
+--- a/Makefile
++++ b/Makefile
+@@ -61,7 +61,7 @@
+ # LDFLAGS = 
+ 
+ .PHONY : all
+-all:    cdbfasta cdbyank 
++all:    cdbfasta cdbyank manpages
+ debug:  all
+ nommap: all
+ cdbfasta:  ./cdbfasta.o ./gcdbz.o $(LIBS) ${GCLDIR}/gcdb.o ${GCLDIR}/GBase.o ${GCLDIR}/GStr.o ${GCLDIR}/GArgs.o
+@@ -74,12 +74,17 @@
+ 
+ .PHONY : tidy
+ tidy::
+-	@${RM} core cdbfasta cdbyank *.o ${GCLDIR}/gcdb.o ${GCLDIR}/GBase.o ${GCLDIR}/GStr.o ${GCLDIR}/GArgs.o
++	@${RM} core cdbfasta cdbyank *.o ${GCLDIR}/gcdb.o ${GCLDIR}/GBase.o ${GCLDIR}/GStr.o ${GCLDIR}/GArgs.o *.1
+ 
+ # target for removing all object files
+ 
+ .PHONY : clean
+ clean:: tidy
+-	@${RM} core cdbfasta cdbyank *.o ${GCLDIR}/gcdb.o ${GCLDIR}/GBase.o ${GCLDIR}/GStr.o ${GCLDIR}/GArgs.o
++	@${RM} core cdbfasta cdbyank *.o ${GCLDIR}/gcdb.o ${GCLDIR}/GBase.o ${GCLDIR}/GStr.o ${GCLDIR}/GArgs.o *.1
+ 
++install : all
++	install -m 755 cdbfasta cdbyank $(DESTDIR)/usr/bin
+ 
++manpages : cdbfasta.1 cdbyank.1
++%.1 : %
++	help2man --no-discard-stderr --version-option=-v $< | sed 's/^Invalid argument:.*//' > $@

Added: trunk/packages/cdbfasta/trunk/debian/patches/series
===================================================================
--- trunk/packages/cdbfasta/trunk/debian/patches/series	                        (rev 0)
+++ trunk/packages/cdbfasta/trunk/debian/patches/series	2011-04-08 17:23:08 UTC (rev 6490)
@@ -0,0 +1 @@
+add-install-target-to-makefile

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