[med-svn] [SCM] fastx-toolkit branch, master, updated. upstream/0.0.13-4-g660b8d4

Charles Plessy plessy at debian.org
Mon Apr 11 08:47:55 UTC 2011


The following commit has been merged in the master branch:
commit 0d225fc6ee22765db7db834c60d142df78501fbd
Author: Charles Plessy <plessy at debian.org>
Date:   Mon Apr 11 17:46:01 2011 +0900

    Copyright check in progress.

diff --git a/debian/copyright b/debian/copyright
index 9bbf8b8..18dd153 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -1,8 +1,6 @@
-Format: DEP5
+Format: http://dep.debian.net/deps/dep5/
 Source: http://hannonlab.cshl.edu/fastx_toolkit/fastx_toolkit-0.0.13.tar.bz2
-Copyright: 2008–2009, Assaf Gordon <gordon at cshl.edu>
-License: AGPL-3
-  FASTX-Toolkit LICENSE
+Comment: FASTX-Toolkit LICENSE
   =====================
  .  
  FASTX-Toolkit is distributed under the Affero GPL (AGPL) version 3 or later.
@@ -14,38 +12,62 @@ License: AGPL-3
  Galaxy itself (which is a more permissive, MIT style license).
  See the GALAXY-LICENSE file.
 
+Files: *
+Copyright: 2008–2009, Assaf Gordon <gordon at cshl.edu>
+License: AGPL-3+
+
+Files: galaxy/*
+
+Files: tools/fastx_toolkit/fastx_barcode_splitter_galaxy_wrapper.sh
+License: AGPL-3+
+
+Files: m4/ax_c_long_long.m4
+Comment: See <http://www.nongnu.org/autoconf-archive/ax_c_long_long.html>.
+Copyright: © 2008 Caolan McNamara <caolan at skynet.ie>
+License: GAP-nowarranty
+
+Files: m4/ax_cxx_header_stdcxx_tr1.m4
+Copyright: © 2008 Benjamin Kosnik <bkoz at redhat.com>
+License: GAP-nowarranty 
+
+License: GAP-nowarranty 
+ Copying and distribution of this file, with or without modification, are
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+ warranty.
+
 License: AGPL-3
                      GNU AFFERO GENERAL PUBLIC LICENSE
                         Version 3, 19 November 2007
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  WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS
  THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY
@@ -623,47 +645,47 @@ License: AGPL-3
  PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS),
  EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF
  SUCH DAMAGES.
- 
+ .
    17. Interpretation of Sections 15 and 16.
- 
+ .
    If the disclaimer of warranty and limitation of liability provided
  above cannot be given local legal effect according to their terms,
  reviewing courts shall apply local law that most closely approximates
  an absolute waiver of all civil liability in connection with the
  Program, unless a warranty or assumption of liability accompanies a
  copy of the Program in return for a fee.
- 
+ .
                       END OF TERMS AND CONDITIONS
- 
+ .
              How to Apply These Terms to Your New Programs
- 
+ .
    If you develop a new program, and you want it to be of the greatest
  possible use to the public, the best way to achieve this is to make it
  free software which everyone can redistribute and change under these terms.
- 
+ .
    To do so, attach the following notices to the program.  It is safest
  to attach them to the start of each source file to most effectively
  state the exclusion of warranty; and each file should have at least
  the "copyright" line and a pointer to where the full notice is found.
- 
+ .
      <one line to give the program's name and a brief idea of what it does.>
      Copyright (C) <year>  <name of author>
- 
+ .
      This program is free software: you can redistribute it and/or modify
      it under the terms of the GNU Affero General Public License as published by
      the Free Software Foundation, either version 3 of the License, or
      (at your option) any later version.
- 
+ .
      This program is distributed in the hope that it will be useful,
      but WITHOUT ANY WARRANTY; without even the implied warranty of
      MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
      GNU Affero General Public License for more details.
- 
+ .
      You should have received a copy of the GNU Affero General Public License
      along with this program.  If not, see <http://www.gnu.org/licenses/>.
- 
+ .
  Also add information on how to contact you by electronic and paper mail.
- 
+ .
    If your software can interact with users remotely through a computer
  network, you should also make sure that it provides a way for users to
  get its source.  For example, if your program is a web application, its
@@ -671,7 +693,7 @@ License: AGPL-3
  of the code.  There are many ways you could offer source, and different
  solutions will be better for different programs; see section 13 for the
  specific requirements.
- 
+ .
    You should also get your employer (if you work as a programmer) or school,
  if any, to sign a "copyright disclaimer" for the program, if necessary.
  For more information on this, and how to apply and follow the GNU AGPL, see

-- 
FASTQ/A short-reads pre-processing tools



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