[med-svn] r6539 - in trunk/packages/gbrowse/tags: . 2.26~dfsg-1/debian
Charles Plessy
plessy at alioth.debian.org
Wed Apr 13 06:28:38 UTC 2011
Author: plessy
Date: 2011-04-13 06:28:36 +0000 (Wed, 13 Apr 2011)
New Revision: 6539
Added:
trunk/packages/gbrowse/tags/2.26~dfsg-1/
trunk/packages/gbrowse/tags/2.26~dfsg-1/debian/changelog
trunk/packages/gbrowse/tags/2.26~dfsg-1/debian/control
trunk/packages/gbrowse/tags/2.26~dfsg-1/debian/copyright
trunk/packages/gbrowse/tags/2.26~dfsg-1/debian/postrm
Removed:
trunk/packages/gbrowse/tags/2.26~dfsg-1/debian/changelog
trunk/packages/gbrowse/tags/2.26~dfsg-1/debian/control
trunk/packages/gbrowse/tags/2.26~dfsg-1/debian/copyright
trunk/packages/gbrowse/tags/2.26~dfsg-1/debian/postrm
Log:
[svn-buildpackage] Tagging gbrowse 2.26~dfsg-1
Deleted: trunk/packages/gbrowse/tags/2.26~dfsg-1/debian/changelog
===================================================================
--- trunk/packages/gbrowse/trunk/debian/changelog 2011-04-12 14:13:54 UTC (rev 6532)
+++ trunk/packages/gbrowse/tags/2.26~dfsg-1/debian/changelog 2011-04-13 06:28:36 UTC (rev 6539)
@@ -1,5 +0,0 @@
-gbrowse (2.26~dfsg-1) unstable; urgency=low
-
- * Initial Release (Closes: #429610).
-
- -- Olivier Sallou <olivier.sallou at irisa.fr> Sat, 29 Jan 2011 21:55:43 +0100
Copied: trunk/packages/gbrowse/tags/2.26~dfsg-1/debian/changelog (from rev 6538, trunk/packages/gbrowse/trunk/debian/changelog)
===================================================================
--- trunk/packages/gbrowse/tags/2.26~dfsg-1/debian/changelog (rev 0)
+++ trunk/packages/gbrowse/tags/2.26~dfsg-1/debian/changelog 2011-04-13 06:28:36 UTC (rev 6539)
@@ -0,0 +1,6 @@
+gbrowse (2.26~dfsg-1) experimental; urgency=low
+
+ [ Olivier Sallou ]
+ * Initial Release (Closes: #429610).
+
+ -- Charles Plessy <plessy at debian.org> Wed, 13 Apr 2011 14:45:45 +0900
Deleted: trunk/packages/gbrowse/tags/2.26~dfsg-1/debian/control
===================================================================
--- trunk/packages/gbrowse/trunk/debian/control 2011-04-12 14:13:54 UTC (rev 6532)
+++ trunk/packages/gbrowse/tags/2.26~dfsg-1/debian/control 2011-04-13 06:28:36 UTC (rev 6539)
@@ -1,61 +0,0 @@
-Source: gbrowse
-Section: science
-Priority: optional
-Build-Depends: bioperl (>= 1.5.9), debhelper (>= 8),
- libbio-graphics-perl (>= 2.09), libcapture-tiny-perl,
- libcgi-session-perl (>= 4.02),
- libgd-gd2-perl (>= 2.07) | libgd-gd2-noxpm-perl (>= 2.07), libio-string-perl,
- libjson-perl, libstatistics-descriptive-perl, libwww-perl, perl,
- perl (>= 5.10.0) | libextutils-cbuilder-perl, sqlite3,libdbd-sqlite3-perl, libterm-readkey-perl, libjs-prototype (>=1.7), libjs-scriptaculous (>= 1.9)
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Olivier Sallou <olivier.sallou at irisa.fr>
-DM-Upload-Allowed: yes
-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/gbrowse/trunk/
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/gbrowse/?rev=0&sc=0
-Standards-Version: 3.9.1
-Homepage: http://search.cpan.org/dist/GBrowse/
-
-Package: gbrowse
-Architecture: all
-Depends: ${misc:Depends}, ${perl:Depends},
- bioperl (>= 1.5.9), libbio-graphics-perl (>= 2.09),
- libcgi-session-perl (>= 4.02),
- libgd-gd2-noxpm-perl (>= 2.07) | libgd-gd2-perl (>= 2.07), libio-string-perl,
- libjson-perl, libstatistics-descriptive-perl, libwww-perl, perl,
- perl (>= 5.10.0) | libextutils-cbuilder-perl, libterm-readkey-perl, sqlite3, libdbd-sqlite3-perl, libjs-prototype (>=1.7), libjs-scriptaculous (>=1.9)
-Suggests: gbrowse-data, gbrowse-calign
-Description: The GMOD Generic Genome Browser
- The Generic Genome Browser is a simple but highly
- configurable web-based genome browser. It is a component of the
- Generic Model Organism Systems Database project (GMOD).
- Some of its features:
- * Simultaneous bird's eye and detailed views of the genome;
- * Scroll, zoom, center;
- * Attach arbitrary URLs to any annotation;
- * Order and appearance of tracks are customizable by administrator and
- end-user;
- * Search by annotation ID, name, or comment;
- * Supports third party annotation using GFF formats;
- * Settings persist across sessions;
- * DNA and GFF dumps;
- * Connectivity to different databases, including BioSQL and Chado;
- * Multi-language support;
- * Third-party feature loading;
- * Customizable plug-in architecture (e.g. run BLAST, dump & import many
- formats, find oligonucleotides, design primers, create restriction maps,
- edit features).
-
-Package: gbrowse-data
-Architecture: all
-Depends: ${misc:Depends}
-Recommends: gbrowse
-Description: Sample data to use GBrowse
- This package contains sample data to test the gbrowse tool
- with the Yeast genome.
-
-Package: gbrowse-calign
-Architecture: any
-Depends: ${perl:Depends},${shlibs:Depends},${misc:Depends}, perl (>= 5.10.0), gbrowse
-Description: CAlign helper
- This package provides the CAlign helper
- for use with Realign. It speeds up Smith-Waterman alignment.
Copied: trunk/packages/gbrowse/tags/2.26~dfsg-1/debian/control (from rev 6537, trunk/packages/gbrowse/trunk/debian/control)
===================================================================
--- trunk/packages/gbrowse/tags/2.26~dfsg-1/debian/control (rev 0)
+++ trunk/packages/gbrowse/tags/2.26~dfsg-1/debian/control 2011-04-13 06:28:36 UTC (rev 6539)
@@ -0,0 +1,62 @@
+Source: gbrowse
+Section: science
+Priority: optional
+Build-Depends: bioperl (>= 1.5.9), debhelper (>= 8),
+ libbio-graphics-perl (>= 2.09), libcapture-tiny-perl,
+ libcgi-session-perl (>= 4.02),
+ libgd-gd2-perl (>= 2.07) | libgd-gd2-noxpm-perl (>= 2.07), libio-string-perl,
+ libjson-perl, libstatistics-descriptive-perl, libwww-perl, libhttp-daemon-perl, perl,
+ perl (>= 5.10.0) | libextutils-cbuilder-perl, sqlite3,libdbd-sqlite3-perl, libterm-readkey-perl, libjs-prototype (>=1.7), libjs-scriptaculous (>= 1.9)
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Olivier Sallou <olivier.sallou at irisa.fr>,
+ Charles Plessy <plessy at debian.org>
+DM-Upload-Allowed: yes
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/gbrowse/trunk/
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/gbrowse/?rev=0&sc=0
+Standards-Version: 3.9.1
+Homepage: http://www.gbrowse.org/
+
+Package: gbrowse
+Architecture: all
+Depends: ${misc:Depends}, ${perl:Depends},
+ bioperl (>= 1.5.9), libbio-graphics-perl (>= 2.09),
+ libcgi-session-perl (>= 4.02),
+ libgd-gd2-noxpm-perl (>= 2.07) | libgd-gd2-perl (>= 2.07), libio-string-perl,
+ libjson-perl, libstatistics-descriptive-perl, libwww-perl, libhttp-daemon-perl, perl,
+ perl (>= 5.10.0) | libextutils-cbuilder-perl, libterm-readkey-perl, sqlite3, libdbd-sqlite3-perl, libjs-prototype (>=1.7), libjs-scriptaculous (>=1.9)
+Suggests: gbrowse-data, gbrowse-calign
+Description: The GMOD Generic Genome Browser
+ The Generic Genome Browser is a simple but highly
+ configurable web-based genome browser. It is a component of the
+ Generic Model Organism Systems Database project (GMOD).
+ Some of its features:
+ * Simultaneous bird's eye and detailed views of the genome;
+ * Scroll, zoom, center;
+ * Attach arbitrary URLs to any annotation;
+ * Order and appearance of tracks are customizable by administrator and
+ end-user;
+ * Search by annotation ID, name, or comment;
+ * Supports third party annotation using GFF formats;
+ * Settings persist across sessions;
+ * DNA and GFF dumps;
+ * Connectivity to different databases, including BioSQL and Chado;
+ * Multi-language support;
+ * Third-party feature loading;
+ * Customizable plug-in architecture (e.g. run BLAST, dump & import many
+ formats, find oligonucleotides, design primers, create restriction maps,
+ edit features).
+
+Package: gbrowse-data
+Architecture: all
+Depends: ${misc:Depends}
+Recommends: gbrowse
+Description: Sample data to use GBrowse
+ This package contains sample data to test the gbrowse tool
+ with the Yeast genome.
+
+Package: gbrowse-calign
+Architecture: any
+Depends: ${perl:Depends},${shlibs:Depends},${misc:Depends}, perl (>= 5.10.0), gbrowse
+Description: CAlign helper
+ This package provides the CAlign helper
+ for use with Realign. It speeds up Smith-Waterman alignment.
Deleted: trunk/packages/gbrowse/tags/2.26~dfsg-1/debian/copyright
===================================================================
--- trunk/packages/gbrowse/trunk/debian/copyright 2011-04-12 14:13:54 UTC (rev 6532)
+++ trunk/packages/gbrowse/tags/2.26~dfsg-1/debian/copyright 2011-04-13 06:28:36 UTC (rev 6539)
@@ -1,347 +0,0 @@
-Format-Specification: http://svn.debian.org/wsvn/dep/web/deps/dep5.mdwn?op=file&rev=135
-Maintainer: Lincoln Stein <lincoln.stein at gmail.com>
-Source: http://search.cpan.org/dist/GBrowse/
-Name: GBrowse
-
-Files: *
-Copyright: © 2002 Cold Spring Harbor Laboratory and University of California, Berkeley
- © 2008 H. Mark Okada <hmokada at hotmail.com>.
- © 2001,2003,2005,2008 Cold Spring Harbor Laboratory
- © 2010 Ontario Institute for Cancer Research
-License: GPL-1+ or Artistic-2.0
- The Generic Genome Browser package versions between 1.0 and 1.8 and
- all associated files are Copyright (c) 2002 Cold Spring Harbor
- Laboratory and University of California, Berkeley. Versions 1.9 and
- higher are copyright (c) 2010 Ontario Institute for Cancer Research.
- .
- This package and its accompanying libraries is free software; you can
- redistribute it and/or modify it under the terms of the GPL (either
- version 1, or at your option, any later version) or the Artistic
- License 2.0. Refer to LICENSE for the full license text.
- .
- CSHL makes no representations whatsoever as to the SOFTWARE contained
- herein. It is experimental in nature and is provided WITHOUT WARRANTY
- OF MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE OR ANY OTHER
- WARRANTY, EXPRESS OR IMPLIED. CSHL MAKES NO REPRESENTATION OR
- WARRANTY THAT THE USE OF THIS SOFTWARE WILL NOT INFRINGE ANY PATENT OR
- OTHER PROPRIETARY RIGHT.
- .
- By downloading this SOFTWARE, your Institution hereby indemnifies CSHL
- against any loss, claim, damage or liability, of whatsoever kind or
- nature, which may arise from your Institution's respective use,
- handling or storage of the SOFTWARE.
- .
- If publications result from research using this SOFTWARE, we ask that
- CSHL, University of California, Berkeley and the Ontario Institute for
- Cancer Research be acknowledged and/or credit be given to
- CSHL/Berkeley/OICR scientists, as scientifically appropriate.
-
-Files: bin/auto_install_databases.pl
- bin/bed2gff3.pl
- bin/bp_load_gff.pl
- bin/gtf2gff3.pl
- bin/load_genbank.pl
- bin/make_das_conf.pl
- bin/process_gadfly.pl
- bin/process_ncbi_human.pl
- bin/process_ncbi_human.pl
- bin/process_sgd.pl
- bin/ucsc_genes2gff.pl
- cgi-bin/gbrowse_img
- conf/plugins/Aligner.pm
- conf/plugins/AttributeHiliter.pm
- conf/plugins/RestrictionAnnotator.pm
- conf/plugins/SequenceDumper.pm
- conf/plugins/SimpleTrackFinder.pm
- conf/plugins/Spectrogram.pm
- conf/plugins/TrackFinder.pm
- contrib/Coverage/plugin/Coverage.pm
- docs/pod/GBROWSE_IMG.pod
- docs/pod/MAKE_IMAGES_HOWTO.pod
- docs/pod/PLUGINS_HOWTO.pod
- htdocs/gbrowse_karyotype_help.html
- lib/Bio/DB/GFF/Aggregator/reftranscript.pm
- lib/Bio/DB/GFF/Aggregator/waba_alignment.pm
- lib/Bio/DB/GFF/Aggregator/wormbase_gene.pm
- lib/Bio/Graphics/Browser2/CAlign.pm
- lib/Bio/Graphics/Browser2/Markup.pm
- lib/Bio/Graphics/Browser2/OptionPick.pm
- lib/Bio/Graphics/Browser2/PadAlignment.pm
- lib/Bio/Graphics/Browser2/Realign.pm
- lib/CGI/Toggle.pm
- libalign/CAlign.pm
-Copyright: © 2001–4 Cold Spring Harbor Laboratory
- © Jason Stajich and Cold Spring Harbor Laboratories 2002
- © 2009 Ontario Institute for Cancer Research
- © 2007, University of Utah
- © 2002 Regional Blood Center of Ribeirao Preto
- © 2002 Advanced Biomedical Computing Center, SAIC/NCI-Frederick.
-License: GPL-1+ or Artistic
- This library is free software; you can redistribute it and/or modify
- it under the same terms as Perl itself. See DISCLAIMER.txt for
- disclaimers of warranty.
-
-Files: t/Test.pm
-Copyright: © 1998-1999 Joshua Nathaniel Pritikin. All rights reserved.
-License: Artistic
- This package is free software and is provided "as is" without express
- or implied warranty. It may be used, redistributed and/or modified
- under the terms of the Perl Artistic License (see
- http://www.perl.com/perl/misc/Artistic.html)
-
-Files: contrib/GeneFinder/genefinder/readseq.c
-Copyright: © R Durbin, 1994
-License: unknown
-
-Files: htdocs/css/dropdown/default_theme.css htdocs/css/dropdown/dropdown.css
-Copyright: © 2008 Live Web Institute. All Rights Reserved.
-License: GPL-3
-
-Files: docs/pod/INSTALL.MacOSX.pod
-Copyright @ 2003 Cold Spring Harbor Laboratory
-License: missing, most probably same as Perl
- Material in this document is copyright 2001-2003 by the Cold Spring
- Harbor Laboratory. This information is provided "AS-IS" without any
- warranty, expressed or implied.
-
-Files: htdocs/js/*.js
-Copyright: © 2005-2010 Thomas Fuchs (http://script.aculo.us, http://mir.aculo.us)
- © 2005-2010 Ivan Krstic (http://blogs.law.harvard.edu/ivan)
- © 2005-2010 Jon Tirsen (http://www.tirsen.com)
- © 2007,2008 Sheldon McKay, Cold Spring Harbor Laboratory
-License: MIT (doublecheck it is “the” MIT license)
-
-Files: htdocs/js/prototype.js
-Copyright: © 2005-2010 Sam Stephenson
- © 2009, The Dojo Foundation
-License: Dojo
- Released under the MIT, BSD, and GPL Licenses.
- More information: http://sizzlejs.com/
-
-Files: htdocs/js/x_cook.js
-Copyright: © 2004 Michael Foster
-License: LGPL
-
-Files: htdocs/subtracktable.js
-Copyright: © 2005-2009 Matt Kruse (javascripttoolbox.com)
-License: MIT or GPL
- Dual licensed under the MIT and GPL licenses.
- This basically means you can use this code however you want for
- free, but don't claim to have written it yourself!
- Donations always accepted: http://www.JavascriptToolbox.com/donate/
- .
- Please do not link to the .js files on javascripttoolbox.com from
- your site. Copy the files locally to your server instead.
-
-Files: debian/*
-Copyright: 2011, Olivier Sallou <olivier.sallou at irisa.fr>
-License: Artistic-2.0 or GPL-1+
-
-License: MIT (doublecheck it is “the” MIT license)
- Permission is hereby granted, free of charge, to any person obtaining a copy
- of this software and associated documentation files (the "Software"), to deal
- in the Software without restriction, including without limitation the rights
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-License: GPL-1+
- This program is free software; you can redistribute it and/or modify
- it under the terms of the GNU General Public License as published by
- the Free Software Foundation; either version 1, or (at your option)
- any later version.
- .
- On Debian GNU/Linux systems, the complete text of version 1 of the
- General Public License can be found in `/usr/share/common-licenses/GPL-1'.
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- it under the terms of the Artistic License, which comes with Perl.
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Copied: trunk/packages/gbrowse/tags/2.26~dfsg-1/debian/copyright (from rev 6534, trunk/packages/gbrowse/trunk/debian/copyright)
===================================================================
--- trunk/packages/gbrowse/tags/2.26~dfsg-1/debian/copyright (rev 0)
+++ trunk/packages/gbrowse/tags/2.26~dfsg-1/debian/copyright 2011-04-13 06:28:36 UTC (rev 6539)
@@ -0,0 +1,386 @@
+Format: http://dep.debian.net/deps/dep5/
+Source: http://search.cpan.org/dist/GBrowse/
+
+Files: *
+Copyright: © 2002 Cold Spring Harbor Laboratory and University of California, Berkeley
+ © 2008 H. Mark Okada <hmokada at hotmail.com>.
+ © 2001,2003,2005,2008 Cold Spring Harbor Laboratory
+ © 2010 Ontario Institute for Cancer Research
+License: GPL-1+ or Artistic-2.0
+ The Generic Genome Browser package versions between 1.0 and 1.8 and
+ all associated files are Copyright (c) 2002 Cold Spring Harbor
+ Laboratory and University of California, Berkeley. Versions 1.9 and
+ higher are copyright (c) 2010 Ontario Institute for Cancer Research.
+ .
+ This package and its accompanying libraries is free software; you can
+ redistribute it and/or modify it under the terms of the GPL (either
+ version 1, or at your option, any later version) or the Artistic
+ License 2.0. Refer to LICENSE for the full license text.
+ .
+ CSHL makes no representations whatsoever as to the SOFTWARE contained
+ herein. It is experimental in nature and is provided WITHOUT WARRANTY
+ OF MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE OR ANY OTHER
+ WARRANTY, EXPRESS OR IMPLIED. CSHL MAKES NO REPRESENTATION OR
+ WARRANTY THAT THE USE OF THIS SOFTWARE WILL NOT INFRINGE ANY PATENT OR
+ OTHER PROPRIETARY RIGHT.
+ .
+ By downloading this SOFTWARE, your Institution hereby indemnifies CSHL
+ against any loss, claim, damage or liability, of whatsoever kind or
+ nature, which may arise from your Institution's respective use,
+ handling or storage of the SOFTWARE.
+ .
+ If publications result from research using this SOFTWARE, we ask that
+ CSHL, University of California, Berkeley and the Ontario Institute for
+ Cancer Research be acknowledged and/or credit be given to
+ CSHL/Berkeley/OICR scientists, as scientifically appropriate.
+
+Files: bin/auto_install_databases.pl
+ bin/bed2gff3.pl
+ bin/bp_load_gff.pl
+ bin/gtf2gff3.pl
+ bin/load_genbank.pl
+ bin/make_das_conf.pl
+ bin/process_gadfly.pl
+ bin/process_ncbi_human.pl
+ bin/process_ncbi_human.pl
+ bin/process_sgd.pl
+ bin/ucsc_genes2gff.pl
+ cgi-bin/gbrowse_img
+ conf/plugins/Aligner.pm
+ conf/plugins/AttributeHiliter.pm
+ conf/plugins/RestrictionAnnotator.pm
+ conf/plugins/SequenceDumper.pm
+ conf/plugins/SimpleTrackFinder.pm
+ conf/plugins/Spectrogram.pm
+ conf/plugins/TrackFinder.pm
+ contrib/Coverage/plugin/Coverage.pm
+ docs/pod/GBROWSE_IMG.pod
+ docs/pod/MAKE_IMAGES_HOWTO.pod
+ docs/pod/PLUGINS_HOWTO.pod
+ htdocs/gbrowse_karyotype_help.html
+ lib/Bio/DB/GFF/Aggregator/reftranscript.pm
+ lib/Bio/DB/GFF/Aggregator/waba_alignment.pm
+ lib/Bio/DB/GFF/Aggregator/wormbase_gene.pm
+ lib/Bio/Graphics/Browser2/CAlign.pm
+ lib/Bio/Graphics/Browser2/Markup.pm
+ lib/Bio/Graphics/Browser2/OptionPick.pm
+ lib/Bio/Graphics/Browser2/PadAlignment.pm
+ lib/Bio/Graphics/Browser2/Realign.pm
+ lib/CGI/Toggle.pm
+ libalign/CAlign.pm
+Copyright: © 2001–4 Cold Spring Harbor Laboratory
+ © Jason Stajich and Cold Spring Harbor Laboratories 2002
+ © 2009 Ontario Institute for Cancer Research
+ © 2007, University of Utah
+ © 2002 Regional Blood Center of Ribeirao Preto
+ © 2002 Advanced Biomedical Computing Center, SAIC/NCI-Frederick.
+License: GPL-1+ or Artistic
+ This library is free software; you can redistribute it and/or modify
+ it under the same terms as Perl itself. See DISCLAIMER.txt for
+ disclaimers of warranty.
+
+Files: t/Test.pm
+Copyright: © 1998-1999 Joshua Nathaniel Pritikin. All rights reserved.
+License: Artistic
+ This package is free software and is provided "as is" without express
+ or implied warranty. It may be used, redistributed and/or modified
+ under the terms of the Perl Artistic License (see
+ http://www.perl.com/perl/misc/Artistic.html)
+
+Files: htdocs/css/dropdown/default_theme.css htdocs/css/dropdown/dropdown.css
+Copyright: © 2008 Live Web Institute. All Rights Reserved.
+License: GPL-3+
+Comment: Checked on http://lwis.net/free-css-drop-down-menu/: “This CSS Drop-Down Menu
+ is free for commercial or personal use and is licensed under the GNU General
+ Public License.”
+
+Files: docs/pod/INSTALL.MacOSX.pod
+Copyright: © 2003 Cold Spring Harbor Laboratory
+License: missing-most-probably-same-as-Perl
+ Material in this document is copyright 2001-2003 by the Cold Spring
+ Harbor Laboratory. This information is provided "AS-IS" without any
+ warranty, expressed or implied.
+
+Files: htdocs/js/*.js
+Copyright: © 2005-2010 Thomas Fuchs (http://script.aculo.us, http://mir.aculo.us)
+ © 2005-2010 Ivan Krstic (http://blogs.law.harvard.edu/ivan)
+ © 2005-2010 Jon Tirsen (http://www.tirsen.com)
+ © 2007,2008 Sheldon McKay, Cold Spring Harbor Laboratory
+License: MIT
+
+Files: htdocs/js/prototype.js
+Copyright: © 2005-2010 Sam Stephenson
+ © 2009, The Dojo Foundation
+License: Dojo
+ Released under the MIT, BSD, and GPL Licenses.
+ More information: http://sizzlejs.com/
+
+Files: htdocs/js/x_cook.js
+Copyright: © 2004 Michael Foster
+License: LGPL-2.1+
+
+Files: htdocs/subtracktable.js
+Copyright: © 2005-2009 Matt Kruse (javascripttoolbox.com)
+License: MIT or GPL
+ Dual licensed under the MIT and GPL licenses.
+ This basically means you can use this code however you want for
+ free, but don't claim to have written it yourself!
+ Donations always accepted: http://www.JavascriptToolbox.com/donate/
+ .
+ Please do not link to the .js files on javascripttoolbox.com from
+ your site. Copy the files locally to your server instead.
+
+Files: debian/*
+Copyright: 2011, Olivier Sallou <olivier.sallou at irisa.fr>
+License: Artistic-2.0 or GPL-1+
+
+License: MIT
+ Permission is hereby granted, free of charge, to any person obtaining a copy
+ of this software and associated documentation files (the "Software"), to deal
+ in the Software without restriction, including without limitation the rights
+ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+ copies of the Software, and to permit persons to whom the Software is
+ furnished to do so, subject to the following conditions:
+ .
+ The above copyright notice and this permission notice shall be included in
+ all copies or substantial portions of the Software.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+ THE SOFTWARE.
+
+License: GPL-1+
+ This program is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 1, or (at your option)
+ any later version.
+ .
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program; if not, write to the Free Software
+ Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston MA 02110-1301 USA
+ .
+ On Debian GNU/Linux systems, the complete text of version 1 of the
+ General Public License can be found in `/usr/share/common-licenses/GPL-1'.
+
+License: GPL-3+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+ .
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>
+ or </usr/share/common-licenses/GPL-3>.
+
+License: LGPL-2.1+
+ This library is free software; you can redistribute it and/or
+ modify it under the terms of the GNU Lesser General Public
+ License as published by the Free Software Foundation; either
+ version 2.1 of the License, or (at your option) any later version.
+ .
+ This library is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+ Lesser General Public License for more details.
+ .
+ You should have received a copy of the GNU Lesser General Public
+ License along with this library; if not, write to the Free Software
+ Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
+ .
+ On Debian GNU/Linux systems, the complete text of version 2.1 of the
+ Lesser General Public License can be found in `/usr/share/common-licenses/LGPL-2.1'.
+
+License: Artistic
+ This program is free software; you can redistribute it and/or modify
+ it under the terms of the Artistic License, which comes with Perl.
+ .
+ On Debian GNU/Linux systems, the complete text of the Artistic License
+ can be found in `/usr/share/common-licenses/Artistic'.
+
+License: Artistic-2.0
+ Copyright (c) 2000-2006, The Perl Foundation.
+ .
+ Everyone is permitted to copy and distribute verbatim copies of this license
+ document, but changing it is not allowed.
+ .
+ .
+ Preamble
+ This license establishes the terms under which a given free software Package may
+ be copied, modified, distributed, and/or redistributed. The intent is that the
+ Copyright Holder maintains some artistic control over the development of that
+ Package while still keeping the Package available as open source and free
+ software.
+ .
+ You are always permitted to make arrangements wholly outside of this license
+ directly with the Copyright Holder of a given Package. If the terms of this
+ license do not permit the full use that you propose to make of the Package, you
+ should contact the Copyright Holder and seek a different licensing arrangement.
+ .
+ .
+ Definitions
+ "Copyright Holder" means the individual(s) or organization(s) named in the
+ copyright notice for the entire Package.
+ .
+ "Contributor" means any party that has contributed code or other material to the
+ Package, in accordance with the Copyright Holder's procedures.
+ .
+ "You" and "your" means any person who would like to copy, distribute, or modify
+ the Package.
+ .
+ "Package" means the collection of files distributed by the Copyright Holder, and
+ derivatives of that collection and/or of those files. A given Package may
+ consist of either the Standard Version, or a Modified Version.
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+ "Distribute" means providing a copy of the Package or making it accessible to
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+ .
+ "Distributor Fee" means any fee that you charge for Distributing this Package or
+ providing support for this Package to another party. It does not mean licensing
+ fees.
+ .
+ "Standard Version" refers to the Package if it has not been modified, or has
+ been modified only in ways explicitly requested by the Copyright Holder.
+ .
+ "Modified Version" means the Package, if it has been changed, and such changes
+ were not explicitly requested by the Copyright Holder.
+ .
+ "Original License" means this Artistic License as Distributed with the Standard
+ Version of the Package, in its current version or as it may be modified by The
+ Perl Foundation in the future.
+ .
+ "Source" form means the source code, documentation source, and configuration
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+ "Compiled" form means the compiled bytecode, object code, binary, or any other
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+ Permission for Use and Modification Without Distribution
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+ Permissions for Redistribution of the Standard Version
+ (2) You may Distribute verbatim copies of the Source form of the Standard
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+ notices and associated disclaimers. At your discretion, such verbatim copies may
+ or may not include a Compiled form of the Package.
+ .
+ (3) You may apply any bug fixes, portability changes, and other modifications
+ made available from the Copyright Holder. The resulting Package will still be
+ considered the Standard Version, and as such will be subject to the Original
+ License.
+ .
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+ Distribution of Modified Versions of the Package as Source
+ (4) You may Distribute your Modified Version as Source (either gratis or for a
+ Distributor Fee, and with or without a Compiled form of the Modified Version)
+ provided that you clearly document how it differs from the Standard Version,
+ including, but not limited to, documenting any non-standard features,
+ executables, or modules, and provided that you do at least ONE of the
+ following:
+ .
+ (a) make the Modified Version available to the Copyright Holder of the Standard
+ Version, under the Original License, so that the Copyright Holder may include
+ your modifications in the Standard Version.
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+ .
+ (ii) a license that permits the licensee to freely copy, modify and redistribute
+ the Modified Version using the same licensing terms that apply to the copy that
+ the licensee received, and requires that the Source form of the Modified
+ Version, and of any works derived from it, be made freely available in that
+ license fees are prohibited but Distributor Fees are allowed.
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+ Distribution of Compiled Forms of the Standard Version or Modified Versions without the Source
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+ (5) You may Distribute Compiled forms of the Standard Version without the
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+ Source of the Standard Version. Such instructions must be valid at the time of
+ your distribution. If these instructions, at any time while you are carrying out
+ such distribution, become invalid, you must provide new instructions on demand
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+ distribution within thirty days after you become aware that the instructions are
+ invalid, then you do not forfeit any of your rights under this license.
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+ (6) You may Distribute a Modified Version in Compiled form without the Source,
+ provided that you comply with Section 4 with respect to the Source of the
+ Modified Version.
+ .
+ .
+ Aggregating or Linking the Package
+ (7) You may aggregate the Package (either the Standard Version or Modified
+ Version) with other packages and Distribute the resulting aggregation provided
+ that you do not charge a licensing fee for the Package. Distributor Fees are
+ permitted, and licensing fees for other components in the aggregation are
+ permitted. The terms of this license apply to the use and Distribution of the
+ Standard or Modified Versions as included in the aggregation.
+ .
+ (8) You are permitted to link Modified and Standard Versions with other works,
+ to embed the Package in a larger work of your own, or to build stand-alone
+ binary or bytecode versions of applications that include the Package, and
+ Distribute the result without restriction, provided the result does not expose a
+ direct interface to the Package.
+ .
+ .
+ Items That are Not Considered Part of a Modified Version
+ (9) Works (including, but not limited to, modules and scripts) that merely
+ extend or make use of the Package, do not, by themselves, cause the Package to
+ be a Modified Version. In addition, such works are not considered parts of the
+ Package itself, and are not subject to the terms of this license.
+ .
+ .
+ General Provisions
+ (10) Any use, modification, and distribution of the Standard or Modified
+ Versions is governed by this Artistic License. By using, modifying or
+ distributing the Package, you accept this license. Do not use, modify, or
+ distribute the Package, if you do not accept this license.
+ .
+ (11) If your Modified Version has been derived from a Modified Version made by
+ someone other than you, you are nevertheless required to ensure that your
+ Modified Version complies with the requirements of this license.
+ .
+ (12) This license does not grant you the right to use any trademark, service
+ mark, tradename, or logo of the Copyright Holder.
+ .
+ (13) This license includes the non-exclusive, worldwide, free-of-charge patent
+ license to make, have made, use, offer to sell, sell, import and otherwise
+ transfer the Package with respect to any patent claims licensable by the
+ Copyright Holder that are necessarily infringed by the Package. If you institute
+ patent litigation (including a cross-claim or counterclaim) against any party
+ alleging that the Package constitutes direct or contributory patent
+ infringement, then this Artistic License to you shall terminate on the date that
+ such litigation is filed.
+ .
+ (14) Disclaimer of Warranty: THE PACKAGE IS PROVIDED BY THE COPYRIGHT HOLDER AND
+ CONTRIBUTORS "AS IS' AND WITHOUT ANY EXPRESS OR IMPLIED WARRANTIES. THE IMPLIED
+ WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, OR
+ NON-INFRINGEMENT ARE DISCLAIMED TO THE EXTENT PERMITTED BY YOUR LOCAL LAW.
+ UNLESS REQUIRED BY LAW, NO COPYRIGHT HOLDER OR CONTRIBUTOR WILL BE LIABLE FOR
+ ANY DIRECT, INDIRECT, INCIDENTAL, OR CONSEQUENTIAL DAMAGES ARISING IN ANY WAY
+ OUT OF THE USE OF THE PACKAGE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
+ DAMAGE.
Deleted: trunk/packages/gbrowse/tags/2.26~dfsg-1/debian/postrm
===================================================================
--- trunk/packages/gbrowse/trunk/debian/postrm 2011-04-12 14:13:54 UTC (rev 6532)
+++ trunk/packages/gbrowse/tags/2.26~dfsg-1/debian/postrm 2011-04-13 06:28:36 UTC (rev 6539)
@@ -1,32 +0,0 @@
-#!/bin/bash
-
-set -e
-
-case "$1" in
- purge|remove|upgrade|failed-upgrade|abort-install|abort-upgrade|disappear)
- rm -rf /var/cache/gbrowse
-
- if [ -e /usr/share/gbrowse ] ; then
- rm -rf /usr/share/gbrowse
- fi
-
- if [ "$1" = "purge" ] ; then
- update-rc.d gbrowse-slave remove
- if [ -e /etc/init.d/gbrowse-slave ] ; then
- rm /etc/init.d/gbrowse-slave
- fi
- if [ -e /etc/default/gbrowse-slave ] ; then
- rm /etc/default/gbrowse-slave
- fi
- fi
- ;;
-
- *)
- echo "postrm called with unknown argument \`$1'" >&2
- exit 1
- ;;
-esac
-
-
-#DEBHELPER#
-
Copied: trunk/packages/gbrowse/tags/2.26~dfsg-1/debian/postrm (from rev 6536, trunk/packages/gbrowse/trunk/debian/postrm)
===================================================================
--- trunk/packages/gbrowse/tags/2.26~dfsg-1/debian/postrm (rev 0)
+++ trunk/packages/gbrowse/tags/2.26~dfsg-1/debian/postrm 2011-04-13 06:28:36 UTC (rev 6539)
@@ -0,0 +1,32 @@
+#!/bin/bash
+
+set -e
+
+case "$1" in
+ purge|remove|upgrade|failed-upgrade|abort-install|abort-upgrade|disappear)
+ rm -rf /var/cache/gbrowse
+
+ if [ -e /usr/share/gbrowse ] ; then
+ rm -rf /usr/share/gbrowse
+ fi
+
+ if [ "$1" = "purge" ] ; then
+ update-rc.d gbrowse-slave remove
+ if [ -e /etc/init.d/gbrowse-slave ] ; then
+ rm /etc/init.d/gbrowse-slave
+ fi
+ if [ -e /etc/default/gbrowse-slave ] ; then
+ rm /etc/default/gbrowse-slave
+ fi
+ fi
+ ;;
+
+ *)
+ echo "postrm called with unknown argument \`$1'" >&2
+ exit 1
+ ;;
+esac
+
+
+#DEBHELPER#
+
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