[med-svn] r6726 - trunk/packages/ncbi-blast-plus/trunk/debian

[olivier sallou]

Author: osallou-guest
Date: 2011-04-29 15:51:36 +0000 (Fri, 29 Apr 2011)
New Revision: 6726

Removed:
   trunk/packages/ncbi-blast-plus/trunk/debian/ncbi-blast-plus-dev.docs
Modified:
   trunk/packages/ncbi-blast-plus/trunk/debian/changelog
   trunk/packages/ncbi-blast-plus/trunk/debian/control
   trunk/packages/ncbi-blast-plus/trunk/debian/rules
Log:
remove dev, update rpath issues

Modified: trunk/packages/ncbi-blast-plus/trunk/debian/changelog
===================================================================
--- trunk/packages/ncbi-blast-plus/trunk/debian/changelog	2011-04-29 14:59:35 UTC (rev 6725)
+++ trunk/packages/ncbi-blast-plus/trunk/debian/changelog	2011-04-29 15:51:36 UTC (rev 6726)
@@ -1,5 +1,5 @@
 ncbi-blast-plus (2.2.25-1) unstable; urgency=low
 
-  * Initial release (Closes: #nnnn)  <nnnn is the bug number of your ITP>
+  * Initial release (Closes: #624394) 
 
- -- Olivier Sallou <osallou at irisa.fr>  Wed, 27 Apr 2011 15:19:59 +0200
+ -- Olivier Sallou <olivier.sallou at irisa.fr>  Wed, 27 Apr 2011 15:19:59 +0200

Modified: trunk/packages/ncbi-blast-plus/trunk/debian/control
===================================================================
--- trunk/packages/ncbi-blast-plus/trunk/debian/control	2011-04-29 14:59:35 UTC (rev 6725)
+++ trunk/packages/ncbi-blast-plus/trunk/debian/control	2011-04-29 15:51:36 UTC (rev 6726)
@@ -1,7 +1,7 @@
 Source: ncbi-blast-plus
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 7.0.50~),libboost-all-dev,zlib1g-dev,bzip2,python,libpcre++-dev,zlib1g-dev
+Build-Depends: debhelper (>= 7.0.50~),autotools-dev,libboost-all-dev,zlib1g-dev,bzip2,python,libpcre++-dev,zlib1g-dev,chrpath
 Standards-Version: 3.9.1
 Uploaders: Olivier Sallou <olivier.sallou at irisa.fr>
 DM-Upload-Allowed: yes
@@ -20,14 +20,11 @@
   used sequence similarity tool. There are versions of BLAST that 
  compare protein queries to protein databases, nucleotide queries 
  to nucleotide databases, as well as versions that translate nucleotide 
- queries or databases in all six frames and compare to protein databases or queries.
+ queries or databases in all six frames and compare to protein databases 
+ or queries.
  PSI-BLAST produces a position-specific-scoring-matrix (PSSM) starting 
  with a protein query, and then uses that PSSM to perform further searches.
- It is also possible to compare a protein or nucleotide query to a database of PSSM’s.
- The NCBI supports a BLAST web page at blast.ncbi.nlm.nih.gov as well as a network service.
-
-Package: ncbi-blast-plus-dev
-Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}
-Description: Libraries and includes for development
- Contains static libraries files and ncbi-tools++ includes.
+ It is also possible to compare a protein or nucleotide query to a 
+ database of PSSM’s.
+ The NCBI supports a BLAST web page at blast.ncbi.nlm.nih.gov as well as
+  a network service.

Deleted: trunk/packages/ncbi-blast-plus/trunk/debian/ncbi-blast-plus-dev.docs
===================================================================
--- trunk/packages/ncbi-blast-plus/trunk/debian/ncbi-blast-plus-dev.docs	2011-04-29 14:59:35 UTC (rev 6725)
+++ trunk/packages/ncbi-blast-plus/trunk/debian/ncbi-blast-plus-dev.docs	2011-04-29 15:51:36 UTC (rev 6726)
@@ -1 +0,0 @@
-include/util/bitset/license.txt

Modified: trunk/packages/ncbi-blast-plus/trunk/debian/rules
===================================================================
--- trunk/packages/ncbi-blast-plus/trunk/debian/rules	2011-04-29 14:59:35 UTC (rev 6725)
+++ trunk/packages/ncbi-blast-plus/trunk/debian/rules	2011-04-29 15:51:36 UTC (rev 6726)
@@ -9,7 +9,7 @@
 # Uncomment this to turn on verbose mode.
 #export DH_VERBOSE=1
 
-export DEB_CONFIGURE_EXTRA_FLAGS= --with-dll --without-debug --with-mt  --without-gbench --without-internal  --libdir=${CURDIR}/debian/ncbi-blast-plus/usr/lib/ncbi-blast-plus  --bindir=${CURDIR}/debian/ncbi-blast-plus/usr/bin --includedir=${CURDIR}/debian/ncbi-blast-plus/usr/include  --without-dbapi --without-serial --without-objects --without-ncbi-crypt --without-3psw
+export DEB_CONFIGURE_EXTRA_FLAGS= --with-dll --without-debug --with-mt  --without-gbench --without-internal  --libdir=${CURDIR}/debian/ncbi-blast-plus/usr/lib/ncbi-blast-plus  --bindir=${CURDIR}/debian/ncbi-blast-plus/usr/bin --includedir=${CURDIR}/debian/ncbi-blast-plus/usr/include  --without-3psw  --without-dbapi
 
 override_dh_auto_configure:
 	${CURDIR}/configure ${DEB_CONFIGURE_EXTRA_FLAGS} --prefix=${CURDIR}/debian/ncbi-blast-plus
@@ -18,10 +18,12 @@
 override_dh_install:
 	dh_install
 	rm -f ${CURDIR}/debian/ncbi-blast-plus/usr/bin/*test*
-	mkdir -p ${CURDIR}/debian/ncbi-blast-plus-dev/usr/lib/ncbi-blast-plus
+	#mkdir -p ${CURDIR}/debian/ncbi-blast-plus-dev/usr/lib/ncbi-blast-plus
+	rm -f ${CURDIR}/debian/ncbi-blast-plus/usr/lib/ncbi-blast-plus/*.a
 	#mv ${CURDIR}/debian/ncbi-blast-plus/usr/lib/ncbi-blast-plus/*.a ${CURDIR}/debian/ncbi-blast-plus-dev/usr/lib/ncbi-blast-plus/
-	mv ${CURDIR}/debian/ncbi-blast-plus/usr/include ${CURDIR}/debian/ncbi-blast-plus-dev/usr/
-	
+	#mv ${CURDIR}/debian/ncbi-blast-plus/usr/include ${CURDIR}/debian/ncbi-blast-plus-dev/usr/
+	rm -rf ${CURDIR}/debian/ncbi-blast-plus/usr/include
+	find ${CURDIR}/debian/ncbi-blast-plus/usr/bin/ -type f -not -name "*.p*" | xargs chrpath -d
 
 override_dh_clean:
 	dh_clean