[med-svn] r7425 - in trunk/packages: . anfo anfo/trunk anfo/trunk/debian anfo/trunk/debian/source
Timothy Booth
tbooth-guest at alioth.debian.org
Thu Aug 11 13:20:16 UTC 2011
Author: tbooth-guest
Date: 2011-08-11 13:20:16 +0000 (Thu, 11 Aug 2011)
New Revision: 7425
Added:
trunk/packages/anfo/
trunk/packages/anfo/trunk/
trunk/packages/anfo/trunk/debian/
trunk/packages/anfo/trunk/debian/README.Debian
trunk/packages/anfo/trunk/debian/changelog
trunk/packages/anfo/trunk/debian/compat
trunk/packages/anfo/trunk/debian/control
trunk/packages/anfo/trunk/debian/copyright
trunk/packages/anfo/trunk/debian/docs
trunk/packages/anfo/trunk/debian/patches/
trunk/packages/anfo/trunk/debian/rules
trunk/packages/anfo/trunk/debian/source/
trunk/packages/anfo/trunk/debian/source/format
trunk/packages/anfo/trunk/debian/watch
Log:
Quick packaging of Anfo. No problems with build, though
one manpage is missing.
Suggest awaiting promised 1.0 release before trying to push this into Debian.
Added: trunk/packages/anfo/trunk/debian/README.Debian
===================================================================
--- trunk/packages/anfo/trunk/debian/README.Debian (rev 0)
+++ trunk/packages/anfo/trunk/debian/README.Debian 2011-08-11 13:20:16 UTC (rev 7425)
@@ -0,0 +1,7 @@
+anfo for Debian
+---------------
+
+Straightforward package. Lintian complains that the library component should be split
+out, so I need to do that at some point.
+
+ -- Tim Booth <tbooth at ceh.ac.uk> Wed, 10 Aug 2011 18:31:11 +0100
Added: trunk/packages/anfo/trunk/debian/changelog
===================================================================
--- trunk/packages/anfo/trunk/debian/changelog (rev 0)
+++ trunk/packages/anfo/trunk/debian/changelog 2011-08-11 13:20:16 UTC (rev 7425)
@@ -0,0 +1,18 @@
+anfo (0.98-1ubuntu4) lucid; urgency=low
+
+ * Add zlib, bzlib, pkg-config, protobuf-compiler build deps.
+
+ -- Tim Booth <tbooth at ceh.ac.uk> Thu, 11 Aug 2011 12:57:21 +0100
+
+anfo (0.98-1ubuntu1) lucid; urgency=low
+
+ * Fix some minor permission issue.
+ * Move to Lucid
+
+ -- Tim Booth <tbooth at ceh.ac.uk> Thu, 11 Aug 2011 10:10:51 +0100
+
+anfo (0.98-1) unstable; urgency=low
+
+ * Initial release. Doesn't close any ITP bug.
+
+ -- Tim Booth <tbooth at ceh.ac.uk> Thu, 11 Aug 2011 10:10:31 +0100
Added: trunk/packages/anfo/trunk/debian/compat
===================================================================
--- trunk/packages/anfo/trunk/debian/compat (rev 0)
+++ trunk/packages/anfo/trunk/debian/compat 2011-08-11 13:20:16 UTC (rev 7425)
@@ -0,0 +1 @@
+7
Added: trunk/packages/anfo/trunk/debian/control
===================================================================
--- trunk/packages/anfo/trunk/debian/control (rev 0)
+++ trunk/packages/anfo/trunk/debian/control 2011-08-11 13:20:16 UTC (rev 7425)
@@ -0,0 +1,18 @@
+Source: anfo
+Section: science
+Priority: extra
+Maintainer: Tim Booth <tbooth at ceh.ac.uk>
+Build-Depends: debhelper (>= 7.0.50~), libpopt-dev, libprotobuf-dev, libelk0-dev, libelk0, zlib1g-dev, libbz2-dev, pkg-config, protobuf-compiler
+Standards-Version: 3.9.1
+Homepage: http://bioinf.eva.mpg.de/anfo/
+
+Package: anfo
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}, libpopt, libprotobuf5, libelk0
+Description: Short Read Aligner/Mapper from MPG
+ Anfo is a mapper in the spirit of Soap/Maq/Bowtie, but its implementation takes
+ more after BLAST/BLAT. It's most useful for the alignment of sequencing reads
+ where the DNA sequence is somehow modified (think ancient DNA or bisulphite
+ treatment) and/or there is more divergence between sample and reference than
+ what fast mappers will handle gracefully (say the reference genome is missing
+ and a related species is used instead).
Added: trunk/packages/anfo/trunk/debian/copyright
===================================================================
--- trunk/packages/anfo/trunk/debian/copyright (rev 0)
+++ trunk/packages/anfo/trunk/debian/copyright 2011-08-11 13:20:16 UTC (rev 7425)
@@ -0,0 +1,25 @@
+This work was packaged for Ubuntu by:
+
+ Tim Booth <tbooth at ceh.ac.uk> on Wed, 10 Aug 2011 18:31:11 +0100
+
+It was downloaded from http://bioinf.eva.mpg.de/anfo/
+
+Upstream Author(s):
+
+ Udo Stenzel <udo_stenzel at eva.mpg.de>
+
+Copyright:
+
+ Copyright (C) 2009 Udo Stenzel
+
+License:
+
+ GPL version 3
+ see `/usr/share/common-licenses/GPL-3'.
+
+The Debian packaging is:
+
+ Copyright (C) 2011 Tim Booth <tbooth at ceh.ac.uk>
+ and is licensed under the GPL version 3,
+ see `/usr/share/common-licenses/GPL-3'.
+
Added: trunk/packages/anfo/trunk/debian/docs
===================================================================
Added: trunk/packages/anfo/trunk/debian/rules
===================================================================
--- trunk/packages/anfo/trunk/debian/rules (rev 0)
+++ trunk/packages/anfo/trunk/debian/rules 2011-08-11 13:20:16 UTC (rev 7425)
@@ -0,0 +1,18 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+# Sample debian/rules that uses debhelper.
+# This file was originally written by Joey Hess and Craig Small.
+# As a special exception, when this file is copied by dh-make into a
+# dh-make output file, you may use that output file without restriction.
+# This special exception was added by Craig Small in version 0.37 of dh-make.
+
+# Uncomment this to turn on verbose mode.
+#export DH_VERBOSE=1
+
+%:
+ dh $@
+
+# ./scm files should not be executable
+override_dh_fixperms :
+ dh_fixperms
+ find debian/anfo -perm -5 -type f \( -name '*.scm' \) -print0 2>/dev/null | xargs -0r chmod 644
Property changes on: trunk/packages/anfo/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/anfo/trunk/debian/source/format
===================================================================
--- trunk/packages/anfo/trunk/debian/source/format (rev 0)
+++ trunk/packages/anfo/trunk/debian/source/format 2011-08-11 13:20:16 UTC (rev 7425)
@@ -0,0 +1 @@
+3.0 (quilt)
Added: trunk/packages/anfo/trunk/debian/watch
===================================================================
--- trunk/packages/anfo/trunk/debian/watch (rev 0)
+++ trunk/packages/anfo/trunk/debian/watch 2011-08-11 13:20:16 UTC (rev 7425)
@@ -0,0 +1,5 @@
+# Compulsory line, this is a version 3 file
+version=3
+
+http://bioinf.eva.mpg.de/anfo anfo-([.0-9]*).tar.gz
+
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