[med-svn] r7563 - in trunk/packages/mafft/tags: . 6.859-1/debian
Charles Plessy
plessy at alioth.debian.org
Sat Aug 27 03:16:39 UTC 2011
Author: plessy
Date: 2011-08-27 03:16:39 +0000 (Sat, 27 Aug 2011)
New Revision: 7563
Added:
trunk/packages/mafft/tags/6.859-1/
trunk/packages/mafft/tags/6.859-1/debian/changelog
trunk/packages/mafft/tags/6.859-1/debian/copyright
Removed:
trunk/packages/mafft/tags/6.859-1/debian/changelog
trunk/packages/mafft/tags/6.859-1/debian/copyright
Log:
[svn-buildpackage] Tagging mafft 6.859-1
Deleted: trunk/packages/mafft/tags/6.859-1/debian/changelog
===================================================================
--- trunk/packages/mafft/trunk/debian/changelog 2011-08-26 16:12:11 UTC (rev 7559)
+++ trunk/packages/mafft/tags/6.859-1/debian/changelog 2011-08-27 03:16:39 UTC (rev 7563)
@@ -1,119 +0,0 @@
-mafft (6.857-1) unstable; urgency=low
-
- * New upstream version.
- * Enable multithread, correct FHS path (debian/rules).
- * Removed extra manpage copies instead of patching Makefile and
- installing via debhleper (debian/patches, debian/rules, debian/manpages).
- * Removed debian/dirs, not needed anymore.
- * Run the tests after installation, and allow them to fail (debian/rules).
- * Build when running debian/rules build (override typo, Closes: #636634).
- * Corrected VCS fields in debian/control.
- * Incremented Standards-Version to reflect conformance wiht Policy 3.9.2
- (debian/control, no changes needed).
-
- -- Charles Plessy <plessy at debian.org> Fri, 05 Aug 2011 09:54:09 +0900
-
-mafft (6.850-1) unstable; urgency=low
-
- * New upstream version
- * Adapted patch to new upstream
- * Debhelper 8 (control + compat)
- * debian/rules: Switch to dh
- * debian/links: override broken symlinks created in Makefile
-
- -- Andreas Tille <tille at debian.org> Sat, 12 Mar 2011 00:02:43 +0100
-
-mafft (6.833-1) unstable; urgency=low
-
- * New upstream version
-
- -- Andreas Tille <tille at debian.org> Wed, 17 Nov 2010 13:51:28 +0100
-
-mafft (6.815-1) unstable; urgency=low
-
- * New upstream version
- * Switch to source format 3.0 (quilt)
- * Standards-Version: 3.9.1 (no changes needed)
-
- -- Andreas Tille <tille at debian.org> Thu, 05 Aug 2010 10:29:50 +0200
-
-mafft (6.811-1) unstable; urgency=low
-
- * New upstream version
- * Standards-Version: 3.8.4 (no changes needed)
-
- -- Andreas Tille <tille at debian.org> Thu, 24 Jun 2010 13:08:06 +0200
-
-mafft (6.717-1) unstable; urgency=low
-
- * New upstream version
- * Added a few informations about Upstream in debian/upstream-metadata.yaml.
- * Documented how this package is tested in debian/README.Debian.
- * Refreshed debian/copyright, using the verbatim upstream license,
- indented with a tabulation.
-
- -- Charles Plessy <plessy at debian.org> Mon, 14 Dec 2009 13:02:59 +0900
-
-mafft (6.716-1) unstable; urgency=low
-
- * New upstream version
-
- -- Andreas Tille <tille at debian.org> Tue, 03 Nov 2009 12:39:12 +0100
-
-mafft (6.713-1) unstable; urgency=low
-
- [ David Paleino ]
- * debian/control:
- - removed myself from Uploaders
-
- [ Andreas Tille ]
- * New upstream version
- * debian/control:
- - Standards-Version: 3.8.3 (no changes needed)
- - s/Debian-Med/Debian Med/
- - Recommends: blast2, lynx, ruby (instead of Suggests - we have a Ruby
- script in /usr/bin using blast and lynx.
- * debhelper 7
- * No need for debian/patches/Securisation-by-mktemp-usage.patch any more
- * debian/watch: Handle -with.*-extensions naming - we are dealing
- with the without-extensions tarball in Debian
-
- -- Andreas Tille <tille at debian.org> Mon, 28 Sep 2009 09:02:30 +0200
-
-mafft (6.240-2) unstable; urgency=high
-
- [ Charles Plessy ]
- * debian/control:
- - Moved the Homepage: field out from the package's description.
- - Enhances: t-coffee.
- * Updated my email address.
- * Securisation of the temorary files of mafft-homologs:
- - debian/control: build-depend on quilt.
- - debian/rules: modified to use quilt.
- - debian/README.source: signals that the package uses quilt.
- - debian/patches: added a patch to use non-guessable temporary files
- (Closes: #496366). Thanks to Dmitry E. Oboukhov for finding the bug, Thijs
- Kinkhorst for preliminary, Kazutaka Katoh for the final implementation,
- and Michael Schutte for the final review.
- - debian/mafft-homologs.1*, debian/README.Debian: document that the
- program is patched.
-
- [ David Paleino ]
- * debian/mafft.1, debian/mafft-homologs.1 added - manpages built statically.
- * debian/control:
- - B-D updated (see above)
- - added myself to Uploaders
- - moved XS-Vcs-* fields to Vcs-*
- - Updated to Standards-Version 3.7.3 (no changes needed)
- * debian/rules:
- - reflecting static build of manpages
- - minor changes
-
- -- Charles Plessy <plessy at debian.org> Mon, 25 Aug 2008 23:30:20 +0900
-
-mafft (6.240-1) unstable; urgency=low
-
- * Initial release (Closes: #409640)
-
- -- Charles Plessy <charles-debian-nospam at plessy.org> Sat, 9 Jun 2007 12:06:43 +0900
-
Copied: trunk/packages/mafft/tags/6.859-1/debian/changelog (from rev 7562, trunk/packages/mafft/trunk/debian/changelog)
===================================================================
--- trunk/packages/mafft/tags/6.859-1/debian/changelog (rev 0)
+++ trunk/packages/mafft/tags/6.859-1/debian/changelog 2011-08-27 03:16:39 UTC (rev 7563)
@@ -0,0 +1,126 @@
+mafft (6.859-1) unstable; urgency=low
+
+ * New upstream release.
+ * Converted debian/copyright to machine-readable (DEP 5) format.
+
+ -- Charles Plessy <plessy at debian.org> Sat, 27 Aug 2011 12:06:00 +0900
+
+mafft (6.857-1) unstable; urgency=low
+
+ * New upstream version.
+ * Enable multithread, correct FHS path (debian/rules).
+ * Removed extra manpage copies instead of patching Makefile and
+ installing via debhleper (debian/patches, debian/rules, debian/manpages).
+ * Removed debian/dirs, not needed anymore.
+ * Run the tests after installation, and allow them to fail (debian/rules).
+ * Build when running debian/rules build (override typo, Closes: #636634).
+ * Corrected VCS fields in debian/control.
+ * Incremented Standards-Version to reflect conformance wiht Policy 3.9.2
+ (debian/control, no changes needed).
+
+ -- Charles Plessy <plessy at debian.org> Fri, 05 Aug 2011 09:54:09 +0900
+
+mafft (6.850-1) unstable; urgency=low
+
+ * New upstream version
+ * Adapted patch to new upstream
+ * Debhelper 8 (control + compat)
+ * debian/rules: Switch to dh
+ * debian/links: override broken symlinks created in Makefile
+
+ -- Andreas Tille <tille at debian.org> Sat, 12 Mar 2011 00:02:43 +0100
+
+mafft (6.833-1) unstable; urgency=low
+
+ * New upstream version
+
+ -- Andreas Tille <tille at debian.org> Wed, 17 Nov 2010 13:51:28 +0100
+
+mafft (6.815-1) unstable; urgency=low
+
+ * New upstream version
+ * Switch to source format 3.0 (quilt)
+ * Standards-Version: 3.9.1 (no changes needed)
+
+ -- Andreas Tille <tille at debian.org> Thu, 05 Aug 2010 10:29:50 +0200
+
+mafft (6.811-1) unstable; urgency=low
+
+ * New upstream version
+ * Standards-Version: 3.8.4 (no changes needed)
+
+ -- Andreas Tille <tille at debian.org> Thu, 24 Jun 2010 13:08:06 +0200
+
+mafft (6.717-1) unstable; urgency=low
+
+ * New upstream version
+ * Added a few informations about Upstream in debian/upstream-metadata.yaml.
+ * Documented how this package is tested in debian/README.Debian.
+ * Refreshed debian/copyright, using the verbatim upstream license,
+ indented with a tabulation.
+
+ -- Charles Plessy <plessy at debian.org> Mon, 14 Dec 2009 13:02:59 +0900
+
+mafft (6.716-1) unstable; urgency=low
+
+ * New upstream version
+
+ -- Andreas Tille <tille at debian.org> Tue, 03 Nov 2009 12:39:12 +0100
+
+mafft (6.713-1) unstable; urgency=low
+
+ [ David Paleino ]
+ * debian/control:
+ - removed myself from Uploaders
+
+ [ Andreas Tille ]
+ * New upstream version
+ * debian/control:
+ - Standards-Version: 3.8.3 (no changes needed)
+ - s/Debian-Med/Debian Med/
+ - Recommends: blast2, lynx, ruby (instead of Suggests - we have a Ruby
+ script in /usr/bin using blast and lynx.
+ * debhelper 7
+ * No need for debian/patches/Securisation-by-mktemp-usage.patch any more
+ * debian/watch: Handle -with.*-extensions naming - we are dealing
+ with the without-extensions tarball in Debian
+
+ -- Andreas Tille <tille at debian.org> Mon, 28 Sep 2009 09:02:30 +0200
+
+mafft (6.240-2) unstable; urgency=high
+
+ [ Charles Plessy ]
+ * debian/control:
+ - Moved the Homepage: field out from the package's description.
+ - Enhances: t-coffee.
+ * Updated my email address.
+ * Securisation of the temorary files of mafft-homologs:
+ - debian/control: build-depend on quilt.
+ - debian/rules: modified to use quilt.
+ - debian/README.source: signals that the package uses quilt.
+ - debian/patches: added a patch to use non-guessable temporary files
+ (Closes: #496366). Thanks to Dmitry E. Oboukhov for finding the bug, Thijs
+ Kinkhorst for preliminary, Kazutaka Katoh for the final implementation,
+ and Michael Schutte for the final review.
+ - debian/mafft-homologs.1*, debian/README.Debian: document that the
+ program is patched.
+
+ [ David Paleino ]
+ * debian/mafft.1, debian/mafft-homologs.1 added - manpages built statically.
+ * debian/control:
+ - B-D updated (see above)
+ - added myself to Uploaders
+ - moved XS-Vcs-* fields to Vcs-*
+ - Updated to Standards-Version 3.7.3 (no changes needed)
+ * debian/rules:
+ - reflecting static build of manpages
+ - minor changes
+
+ -- Charles Plessy <plessy at debian.org> Mon, 25 Aug 2008 23:30:20 +0900
+
+mafft (6.240-1) unstable; urgency=low
+
+ * Initial release (Closes: #409640)
+
+ -- Charles Plessy <charles-debian-nospam at plessy.org> Sat, 9 Jun 2007 12:06:43 +0900
+
Deleted: trunk/packages/mafft/tags/6.859-1/debian/copyright
===================================================================
--- trunk/packages/mafft/trunk/debian/copyright 2011-08-26 16:12:11 UTC (rev 7559)
+++ trunk/packages/mafft/tags/6.859-1/debian/copyright 2011-08-27 03:16:39 UTC (rev 7563)
@@ -1,49 +0,0 @@
-Name : MAFFT
-Contact : Kazutaka Katoh <katoh at bioreg.kyushu-u.ac.jp>
-Source : http://mafft.cbrc.jp/alignment/software/mafft-6.857-without-extensions-src.tgz
-
-Comment : Debian only distributes MAFFT without its extensions.
- The mafft-6.6xx-with-extensions-src.tgz upstream packages have an ‘extensions’
- directory, which contains code from the Vienna RNA package, that does not allow
- commercial use and is therefore unsuitable for Debian.
-
-
-Copyright: (c) 2009 Kazutaka Katoh
-License: Similar to BSD.
-
- Redistribution and use in source and binary forms,
- with or without modification, are permitted provided
- that the following conditions are met:
-
- Redistributions of source code must retain the
- above copyright notice, this list of conditions
- and the following disclaimer. Redistributions in
- binary form must reproduce the above copyright
- notice, this list of conditions and the following
- disclaimer in the documentation and/or other
- materials provided with the distribution.
-
- The name of the author may not be used to endorse
- or promote products derived from this software without
- specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS"
- AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
- MERCHANTABILITY AND FITNESS FOR A PARTICULAR
- PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE
- AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT,
- INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
- DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT
- OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA,
- OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED
- AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
- STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
- OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF
- THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY
- OF SUCH DAMAGE.
-
-Files: debian/*
-Copyright: (C) 2007 Charles Plessy <charles at debian.org>,
- (C) 2009 Andreas Tille <tille at debian.org>
-License: Same as mafft
Copied: trunk/packages/mafft/tags/6.859-1/debian/copyright (from rev 7561, trunk/packages/mafft/trunk/debian/copyright)
===================================================================
--- trunk/packages/mafft/tags/6.859-1/debian/copyright (rev 0)
+++ trunk/packages/mafft/tags/6.859-1/debian/copyright 2011-08-27 03:16:39 UTC (rev 7563)
@@ -0,0 +1,48 @@
+Format: http://dep.debian.net/deps/dep5/
+Source: http://mafft.cbrc.jp/alignment/software/mafft-6.859-without-extensions-src.tgz
+Comment: Debian only distributes MAFFT without its extensions.
+ The mafft-6.x-with-extensions-src.tgz upstream packages have an ‘extensions’
+ directory, which contains code from the Vienna RNA package, that does not allow
+ commercial use and is therefore unsuitable for Debian.
+
+Files: *
+Copyright: © 2009 Kazutaka Katoh
+License: mafft
+ Redistribution and use in source and binary forms,
+ with or without modification, are permitted provided
+ that the following conditions are met:
+ .
+ Redistributions of source code must retain the
+ above copyright notice, this list of conditions
+ and the following disclaimer. Redistributions in
+ binary form must reproduce the above copyright
+ notice, this list of conditions and the following
+ disclaimer in the documentation and/or other
+ materials provided with the distribution.
+ .
+ The name of the author may not be used to endorse
+ or promote products derived from this software without
+ specific prior written permission.
+ .
+ THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS"
+ AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
+ BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+ MERCHANTABILITY AND FITNESS FOR A PARTICULAR
+ PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE
+ AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT,
+ INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+ DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT
+ OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA,
+ OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED
+ AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
+ STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
+ OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF
+ THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY
+ OF SUCH DAMAGE.
+
+Files: debian/*
+Copyright: (C) 2007 Charles Plessy <charles at debian.org>,
+ (C) 2009 Andreas Tille <tille at debian.org>
+License: same-as-mafft
+ See above
+
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