[med-svn] [SCM] cufflinks branch, master, updated. upstream/1.2.1-39-gf82cc58

[Alexandre Mestiashvili]

The following commit has been merged in the master branch:
commit 7b0dc54968184db8823abf9176d0cbb4fd08dddc
Author: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>
Date:   Sun Dec 4 12:17:43 2011 +0000

    modified debian/rules
            added --with autoreconf
            added dh_override_auto_clean and dh_override_clean to successfully build

diff --git a/debian/rules b/debian/rules
index 2843d73..ad1af45 100755
--- a/debian/rules
+++ b/debian/rules
@@ -4,8 +4,12 @@
 #export DH_VERBOSE=1
 
 %:
-	dh $@ --with autotools_dev
+	dh $@ --with autoreconf
 
 override_dh_auto_clean:
+	dh_quilt_patch
 	dh_auto_clean
 	rm -rf autom4te.cache
+override_dh_clean:
+	dh_quilt_unpatch
+	dh_clean

-- 
Transcript assembly, differential expression, and differential regulation for RNA-Seq.