[med-svn] r8859 - in trunk/packages/velvet/tags: . 1.1.07~nozlibcopy-1 1.1.07~nozlibcopy-1/debian

Charles Plessy plessy at alioth.debian.org
Fri Dec 9 05:41:40 UTC 2011


Author: plessy
Date: 2011-12-09 05:41:40 +0000 (Fri, 09 Dec 2011)
New Revision: 8859

Added:
   trunk/packages/velvet/tags/1.1.07~nozlibcopy-1/
   trunk/packages/velvet/tags/1.1.07~nozlibcopy-1/debian/
   trunk/packages/velvet/tags/1.1.07~nozlibcopy-1/debian/changelog
   trunk/packages/velvet/tags/1.1.07~nozlibcopy-1/debian/control
Removed:
   trunk/packages/velvet/tags/1.1.07~nozlibcopy-1/debian/
   trunk/packages/velvet/tags/1.1.07~nozlibcopy-1/debian/changelog
   trunk/packages/velvet/tags/1.1.07~nozlibcopy-1/debian/control
Log:
[svn-buildpackage] Tagging velvet 1.1.07~nozlibcopy-1

Deleted: trunk/packages/velvet/tags/1.1.07~nozlibcopy-1/debian/changelog
===================================================================
--- trunk/packages/velvet/trunk/debian/changelog	2011-12-08 22:18:10 UTC (rev 8856)
+++ trunk/packages/velvet/tags/1.1.07~nozlibcopy-1/debian/changelog	2011-12-09 05:41:40 UTC (rev 8859)
@@ -1,263 +0,0 @@
-velvet (1.1.06~nozlibcopy-1) unstable; urgency=low
-
-  [ Andreas Tille ]
-  * New upstream version
-  * debian/copyright: Revised
-  * debian/get-orig-source: Do not remove MetaVelvet
-  * debian/control:
-     Build-Depends: texlive-latex-base
-
-  [ Charles Plessy ]
-  * Corrected VCS URLs in debian/control.
-  * Compress source and binary packages with xz
-    (debian/rules, debian/get-orig-source).
-  * Turn on multithreading with OpenMP (debian/rules).
-  * Remove empty directory contrib/MetaVelvet-v0.3.1/obj (debian/rules).
-
- -- Charles Plessy <plessy at debian.org>  Tue, 27 Sep 2011 15:12:41 +0900
-
-velvet (1.1.05-1ubuntu4) lucid; urgency=low
-
-  * Moved from CDBS to DH
-  * New upstream.  Still includes a copy of Zlib but the default
-    is now to use the system version, so removed relevant patch.
-  * Modified build to work on unmodified upstream (still works on
-    pruned upstream).
-
- -- Tim Booth <tbooth at ceh.ac.uk>  Thu, 11 Aug 2011 13:34:46 +0100
-
-velvet (1.1.02~nozlibcopy-1) unstable; urgency=low
-
-  * New upstream version
-    upgraded patches, tweak $(LIBS) into Z_LIB_FILES variable
-    of Makefile which makes patch more robust against upstream
-    changes
-  * Debhelper 8 (control+compat)
-  * debian/rules: Leave out Z_LIB_FILES in parameter list
-  * debian/get-orig-source: Once we are rebuilding the original
-    tarball anyway it makes sense to remove an outdated copy of
-    MetaVelvet and replace it rather by a hint to the currently
-    maintained source in README.source
-  * Standards-Version: 3.9.2 (no changes needed)
-
- -- Andreas Tille <tille at debian.org>  Fri, 15 Apr 2011 10:51:16 +0200
-
-velvet (1.0.18~nozlibcopy-1) unstable; urgency=low
-
-  * New upstream version
-  * debian/get-orig-source: Make sure MD5sum stays the same for different
-    download
-
- -- Andreas Tille <tille at debian.org>  Wed, 19 Jan 2011 08:48:19 +0100
-
-velvet (1.0.15~nozlibcopy-2) unstable; urgency=low
-
-  * Fix FTBFS with ld --as-needed (thanks for the patch to
-    Matthias Klose)
-    Closes: #607535
-
- -- Andreas Tille <tille at debian.org>  Mon, 20 Dec 2010 08:43:16 +0100
-
-velvet (1.0.15~nozlibcopy-1) unstable; urgency=low
-
-  * New upstream source
-  * Standards-Version: 3.9.1 (no changes needed)
-  * debian/get-upstream-source: Remove precompiled *.o files and
-    .DS_Store files once we are repackaging anyway
-  * debian/patches/fix-perl-path.patch: Fix Perl path
-
- -- Andreas Tille <tille at debian.org>  Wed, 24 Nov 2010 15:42:33 +0100
-
-velvet (1.0.02~nozlibcopy-1) unstable; urgency=low
-
-  * New upstream version
-  * Source format 3.0 (quilt)
-  * debian/control:
-    - Recommends: python (some new scripts in /usr/share/velvet/contrib
-      are Python scripts)
-    - Build-Depends: quilt
-  * debian/rules:
-    include /usr/share/cdbs/1/rules/patchsys-quilt.mk
-    (instead of simple-patchsys)
-  * debian/patches: Switch to quilt
-  * debian/patches/shuffleSequences_fasta.patch:
-    Add interpreter to Python script
-
- -- Andreas Tille <tille at debian.org>  Thu, 24 Jun 2010 15:41:53 +0200
-
-velvet (0.7.61~nozlibcopy-1) unstable; urgency=low
-
-  * New upstream version
-  * debian/get-orig-source, debian/rules: Strip zlib copy from
-    upstream tarball
-
- -- Andreas Tille <tille at debian.org>  Mon, 22 Mar 2010 15:41:53 +0100
-
-velvet (0.7.59~nozlibcopy-1) unstable; urgency=low
-
-  * New upstream release
-
-  [ Charles Plessy ]
-  * Incremented Standard-Version in debian/control to reflect conformance
-    with Policy 3.8.4 (no changes needed).
-
-  [ Andreas Tille ]
-  * Fixed watch file to make sure it is not supporting newer upstream
-
- -- Charles Plessy <plessy at debian.org>  Sat, 20 Feb 2010 13:00:13 +0900
-
-velvet (0.7.56~nozlibcopy-1) unstable; urgency=low
-
-  * New upstream version.
-  * Repackaged the upstream directory to remove the convenience copy
-    of the zlib. Documented this in ‘debian/README.source’.
-    Closes: #561433.
-  * Updated debian/copyright.
-  * Added ‘include_debians_zlib.patch’ to enforce the use of
-    /usr/include/zlib.h. This patch is applied using CDBS, see
-    ‘debian/rules’ and ‘debian/README.source’.
-  * Renamed ‘debian/reference’ ‘debian/upstream-metadata.yaml’ and
-    centralised upstream-specific information there.
-
- -- Charles Plessy <plessy at debian.org>  Mon, 25 Jan 2010 13:03:06 +0900
-
-velvet (0.7.55-1) unstable; urgency=low
-
-  * New upstream version
-
- -- Andreas Tille <tille at debian.org>  Fri, 25 Sep 2009 14:52:41 +0200
-
-velvet (0.7.53-1) unstable; urgency=low
-
-  * New upstream release:
-    - Ignored reads in Pebble corrected
-    - Added automatic measure of median coverage and median insert length
-    - Updated manual to cover the above
-
- -- Charles Plessy <plessy at debian.org>  Fri, 04 Sep 2009 13:42:22 +0900
-
-velvet (0.7.52-1) unstable; urgency=low
-
-  * New upstream release:
-    V 0.7.51
-    - Small parsing bug
-    - Correction to the observed-insert-length script
-    - Verified strncpy calls
-    - NCBI friendly 10bp N-gaps
-    V 0.7.52
-    - Crashing bug when parsing fa.gz files
-    - Crashing bug with tiny Graph files
-    - Bug when loading FASTA files with short lines
-    - Corrected snp_view.pl script to write reverse strand reads in
-      snp_view_reads file
-    - Corrected snp_view.pl script to behave better near the edges of contigs
-    - Updated observed_insert_length to compute the standard deviation of
-      the set
-    - Corrected observed_insert_length script so that it does not crash on
-      empty libraries
-    - Crashing bug when providing an odd number of paired reads
-    - Mapping bug of reads during tour bus correction
-  * Replaced the UNRELEASED tag by ‘unstable’ in debian/changelog as
-    0.7.50-1 was really uploaded and accepted by the archive.
-
- -- Charles Plessy <plessy at debian.org>  Thu, 03 Sep 2009 20:00:54 +0900
-
-velvet (0.7.50-1) unstable; urgency=low
-
-  * New upstream release:
-    V 0.7.49
-    - Added the optional output of unused reads
-    - Added David Studholme's FastA -> AGP script
-    V 0.7.50
-    - Added the extractContigReads script
-    - Updated the FastA -> AGP script
-    - Added the observed-insert-length script
-    - Small parsing bug in simplified read import
-  * Incremented Standards-Version in debian/control to reflect conformance
-      with Policy 3.8.3 (no changes needed).
-
- -- Charles Plessy <plessy at debian.org>  Wed, 19 Aug 2009 21:58:49 +0900
-
-velvet (0.7.48-1) unstable; urgency=low
-
-  * New upstream release:
-    - Accelerated concatenation (pre-graph and graph)
-    - Unlimited contig size
-    - Bug in parsing FASTA files with very long lines
-    - Parsing bug in snp_view.pl script
-
- -- Charles Plessy <plessy at debian.org>  Tue, 11 Aug 2009 19:54:03 +0900
-
-velvet (0.7.47-1) unstable; urgency=low
-
-  * New upstream release correcting bugs and enhancing documentation.
-  * Multi-Arch support (‘foreign’) in debian/control.
-  * Corrected debian/install to avoid ugly ‘contrib/contrib’ location.
-
- -- Charles Plessy <plessy at debian.org>  Thu, 30 Jul 2009 13:43:13 +0900
-
-velvet (0.7.44-1) unstable; urgency=low
-
-  * New upstream release.
-  * Added bibliographic information in BibTeX format in debian/references.
-  * debian/rules: touch zlib to avoid third-party zlib to be built.
-  * Removed ‘debian/patches/20_external_zlib.patch’. Passing apropriate
-    variables in debian/rules is enough to build dynamically on Debian's
-    zlib.
-  * Removed the quilt patch system (debian/control, debian/README.source
-    debian/rules).
-  * Incremented Standards-Version in debian/control to reflect conformance
-    with Policy 3.8.2 (no changes needed).
-  * Corrected the installation of files that were moved from the
-    ‘third-party’ directory to the ‘contrib’ directory.
-  * Experimentation on debian/copyright.
-
- -- Charles Plessy <plessy at debian.org>  Sun, 12 Jul 2009 00:24:56 +0900
-
-velvet (0.7.37-1) unstable; urgency=low
-
-  * New upstream release. 
-    - Small formatting change to error messages
-    - K > 31 now possible
-    - --help option corrected for velvetg
-    - Acceleration of k-mer operations (comparable to 64bit int performance)
-    - Fixed variable lengths
-    - Reordered struct declaration for more efficent memory alignment
-  * debian/rules:
-    - Restored manpage generation for velvetg*.
-    - Added forgotten CFLAGS for the colorspace building.
-
- -- Charles Plessy <plessy at debian.org>  Sat, 27 Jun 2009 12:27:27 +0900
-
-velvet (0.7.34-1) unstable; urgency=low
-
-  * New upstream release correcting multiple bugs, changing the stats output,
-    allowing optional scaffolding and multiple rounds of Pebble.
-  * Added the programs velveth_de and velvetg_de to the package in /usr/bin,
-    and the scripts shuffleSequences_fasta.pl and shuffleSequences_fastq.pl in
-    /usr/share/velvet (debian/rules, debian/install).
-  * Refreshed debian/copyright. 
-  * Temporarly disabled the manpage generation of velvetg* because the --help
-    option is not available (debian/rules).
-
- -- Charles Plessy <plessy at debian.org>  Tue, 09 Jun 2009 21:28:03 +0900
-
-velvet (0.7.31-1) unstable; urgency=low
-
-  * New upstream version
-  * Standards-Version: 3.8.1 (no changes needed)
-  * Create manpages using help2man
-  * Move third-party/layout and third-party/afg_handling to examples
-    because these scripts are actually not to run velvet but for
-    the convenience of users - in /urs/share/velvet these scripts
-    seem to be perfectly hidden and in /usr/share/doc/velvet might
-    create users attendance
-  * Added missing quilt entry in debian/rules
-
- -- Andreas Tille <tille at debian.org>  Fri, 27 Mar 2009 13:23:32 +0100
-
-velvet (0.7.24-1) unstable; urgency=low
-
-  * Initial release (Closes: #487026)
-
- -- Charles Plessy <plessy at debian.org>  Wed, 09 Jul 2008 14:06:55 +0900

Copied: trunk/packages/velvet/tags/1.1.07~nozlibcopy-1/debian/changelog (from rev 8858, trunk/packages/velvet/trunk/debian/changelog)
===================================================================
--- trunk/packages/velvet/tags/1.1.07~nozlibcopy-1/debian/changelog	                        (rev 0)
+++ trunk/packages/velvet/tags/1.1.07~nozlibcopy-1/debian/changelog	2011-12-09 05:41:40 UTC (rev 8859)
@@ -0,0 +1,272 @@
+velvet (1.1.07~nozlibcopy-1) unstable; urgency=low
+
+  * New upstream release (Closes: #647415).
+  * debian/contol:
+    - Pre-Depends on dpkg (>= 1.15.6) for Ubuntu LTS.
+    - Removed Multi-Arch: foreign.
+
+ -- Charles Plessy <plessy at debian.org>  Fri, 09 Dec 2011 14:07:58 +0900
+
+velvet (1.1.06~nozlibcopy-1) unstable; urgency=low
+
+  [ Andreas Tille ]
+  * New upstream version
+  * debian/copyright: Revised
+  * debian/get-orig-source: Do not remove MetaVelvet
+  * debian/control:
+     Build-Depends: texlive-latex-base
+
+  [ Charles Plessy ]
+  * Corrected VCS URLs in debian/control.
+  * Compress source and binary packages with xz
+    (debian/rules, debian/get-orig-source).
+  * Turn on multithreading with OpenMP (debian/rules).
+  * Remove empty directory contrib/MetaVelvet-v0.3.1/obj (debian/rules).
+
+ -- Charles Plessy <plessy at debian.org>  Tue, 27 Sep 2011 15:12:41 +0900
+
+velvet (1.1.05-1ubuntu4) lucid; urgency=low
+
+  * Moved from CDBS to DH
+  * New upstream.  Still includes a copy of Zlib but the default
+    is now to use the system version, so removed relevant patch.
+  * Modified build to work on unmodified upstream (still works on
+    pruned upstream).
+
+ -- Tim Booth <tbooth at ceh.ac.uk>  Thu, 11 Aug 2011 13:34:46 +0100
+
+velvet (1.1.02~nozlibcopy-1) unstable; urgency=low
+
+  * New upstream version
+    upgraded patches, tweak $(LIBS) into Z_LIB_FILES variable
+    of Makefile which makes patch more robust against upstream
+    changes
+  * Debhelper 8 (control+compat)
+  * debian/rules: Leave out Z_LIB_FILES in parameter list
+  * debian/get-orig-source: Once we are rebuilding the original
+    tarball anyway it makes sense to remove an outdated copy of
+    MetaVelvet and replace it rather by a hint to the currently
+    maintained source in README.source
+  * Standards-Version: 3.9.2 (no changes needed)
+
+ -- Andreas Tille <tille at debian.org>  Fri, 15 Apr 2011 10:51:16 +0200
+
+velvet (1.0.18~nozlibcopy-1) unstable; urgency=low
+
+  * New upstream version
+  * debian/get-orig-source: Make sure MD5sum stays the same for different
+    download
+
+ -- Andreas Tille <tille at debian.org>  Wed, 19 Jan 2011 08:48:19 +0100
+
+velvet (1.0.15~nozlibcopy-2) unstable; urgency=low
+
+  * Fix FTBFS with ld --as-needed (thanks for the patch to
+    Matthias Klose)
+    Closes: #607535
+
+ -- Andreas Tille <tille at debian.org>  Mon, 20 Dec 2010 08:43:16 +0100
+
+velvet (1.0.15~nozlibcopy-1) unstable; urgency=low
+
+  * New upstream source
+  * Standards-Version: 3.9.1 (no changes needed)
+  * debian/get-upstream-source: Remove precompiled *.o files and
+    .DS_Store files once we are repackaging anyway
+  * debian/patches/fix-perl-path.patch: Fix Perl path
+
+ -- Andreas Tille <tille at debian.org>  Wed, 24 Nov 2010 15:42:33 +0100
+
+velvet (1.0.02~nozlibcopy-1) unstable; urgency=low
+
+  * New upstream version
+  * Source format 3.0 (quilt)
+  * debian/control:
+    - Recommends: python (some new scripts in /usr/share/velvet/contrib
+      are Python scripts)
+    - Build-Depends: quilt
+  * debian/rules:
+    include /usr/share/cdbs/1/rules/patchsys-quilt.mk
+    (instead of simple-patchsys)
+  * debian/patches: Switch to quilt
+  * debian/patches/shuffleSequences_fasta.patch:
+    Add interpreter to Python script
+
+ -- Andreas Tille <tille at debian.org>  Thu, 24 Jun 2010 15:41:53 +0200
+
+velvet (0.7.61~nozlibcopy-1) unstable; urgency=low
+
+  * New upstream version
+  * debian/get-orig-source, debian/rules: Strip zlib copy from
+    upstream tarball
+
+ -- Andreas Tille <tille at debian.org>  Mon, 22 Mar 2010 15:41:53 +0100
+
+velvet (0.7.59~nozlibcopy-1) unstable; urgency=low
+
+  * New upstream release
+
+  [ Charles Plessy ]
+  * Incremented Standard-Version in debian/control to reflect conformance
+    with Policy 3.8.4 (no changes needed).
+
+  [ Andreas Tille ]
+  * Fixed watch file to make sure it is not supporting newer upstream
+
+ -- Charles Plessy <plessy at debian.org>  Sat, 20 Feb 2010 13:00:13 +0900
+
+velvet (0.7.56~nozlibcopy-1) unstable; urgency=low
+
+  * New upstream version.
+  * Repackaged the upstream directory to remove the convenience copy
+    of the zlib. Documented this in ‘debian/README.source’.
+    Closes: #561433.
+  * Updated debian/copyright.
+  * Added ‘include_debians_zlib.patch’ to enforce the use of
+    /usr/include/zlib.h. This patch is applied using CDBS, see
+    ‘debian/rules’ and ‘debian/README.source’.
+  * Renamed ‘debian/reference’ ‘debian/upstream-metadata.yaml’ and
+    centralised upstream-specific information there.
+
+ -- Charles Plessy <plessy at debian.org>  Mon, 25 Jan 2010 13:03:06 +0900
+
+velvet (0.7.55-1) unstable; urgency=low
+
+  * New upstream version
+
+ -- Andreas Tille <tille at debian.org>  Fri, 25 Sep 2009 14:52:41 +0200
+
+velvet (0.7.53-1) unstable; urgency=low
+
+  * New upstream release:
+    - Ignored reads in Pebble corrected
+    - Added automatic measure of median coverage and median insert length
+    - Updated manual to cover the above
+
+ -- Charles Plessy <plessy at debian.org>  Fri, 04 Sep 2009 13:42:22 +0900
+
+velvet (0.7.52-1) unstable; urgency=low
+
+  * New upstream release:
+    V 0.7.51
+    - Small parsing bug
+    - Correction to the observed-insert-length script
+    - Verified strncpy calls
+    - NCBI friendly 10bp N-gaps
+    V 0.7.52
+    - Crashing bug when parsing fa.gz files
+    - Crashing bug with tiny Graph files
+    - Bug when loading FASTA files with short lines
+    - Corrected snp_view.pl script to write reverse strand reads in
+      snp_view_reads file
+    - Corrected snp_view.pl script to behave better near the edges of contigs
+    - Updated observed_insert_length to compute the standard deviation of
+      the set
+    - Corrected observed_insert_length script so that it does not crash on
+      empty libraries
+    - Crashing bug when providing an odd number of paired reads
+    - Mapping bug of reads during tour bus correction
+  * Replaced the UNRELEASED tag by ‘unstable’ in debian/changelog as
+    0.7.50-1 was really uploaded and accepted by the archive.
+
+ -- Charles Plessy <plessy at debian.org>  Thu, 03 Sep 2009 20:00:54 +0900
+
+velvet (0.7.50-1) unstable; urgency=low
+
+  * New upstream release:
+    V 0.7.49
+    - Added the optional output of unused reads
+    - Added David Studholme's FastA -> AGP script
+    V 0.7.50
+    - Added the extractContigReads script
+    - Updated the FastA -> AGP script
+    - Added the observed-insert-length script
+    - Small parsing bug in simplified read import
+  * Incremented Standards-Version in debian/control to reflect conformance
+      with Policy 3.8.3 (no changes needed).
+
+ -- Charles Plessy <plessy at debian.org>  Wed, 19 Aug 2009 21:58:49 +0900
+
+velvet (0.7.48-1) unstable; urgency=low
+
+  * New upstream release:
+    - Accelerated concatenation (pre-graph and graph)
+    - Unlimited contig size
+    - Bug in parsing FASTA files with very long lines
+    - Parsing bug in snp_view.pl script
+
+ -- Charles Plessy <plessy at debian.org>  Tue, 11 Aug 2009 19:54:03 +0900
+
+velvet (0.7.47-1) unstable; urgency=low
+
+  * New upstream release correcting bugs and enhancing documentation.
+  * Multi-Arch support (‘foreign’) in debian/control.
+  * Corrected debian/install to avoid ugly ‘contrib/contrib’ location.
+
+ -- Charles Plessy <plessy at debian.org>  Thu, 30 Jul 2009 13:43:13 +0900
+
+velvet (0.7.44-1) unstable; urgency=low
+
+  * New upstream release.
+  * Added bibliographic information in BibTeX format in debian/references.
+  * debian/rules: touch zlib to avoid third-party zlib to be built.
+  * Removed ‘debian/patches/20_external_zlib.patch’. Passing apropriate
+    variables in debian/rules is enough to build dynamically on Debian's
+    zlib.
+  * Removed the quilt patch system (debian/control, debian/README.source
+    debian/rules).
+  * Incremented Standards-Version in debian/control to reflect conformance
+    with Policy 3.8.2 (no changes needed).
+  * Corrected the installation of files that were moved from the
+    ‘third-party’ directory to the ‘contrib’ directory.
+  * Experimentation on debian/copyright.
+
+ -- Charles Plessy <plessy at debian.org>  Sun, 12 Jul 2009 00:24:56 +0900
+
+velvet (0.7.37-1) unstable; urgency=low
+
+  * New upstream release. 
+    - Small formatting change to error messages
+    - K > 31 now possible
+    - --help option corrected for velvetg
+    - Acceleration of k-mer operations (comparable to 64bit int performance)
+    - Fixed variable lengths
+    - Reordered struct declaration for more efficent memory alignment
+  * debian/rules:
+    - Restored manpage generation for velvetg*.
+    - Added forgotten CFLAGS for the colorspace building.
+
+ -- Charles Plessy <plessy at debian.org>  Sat, 27 Jun 2009 12:27:27 +0900
+
+velvet (0.7.34-1) unstable; urgency=low
+
+  * New upstream release correcting multiple bugs, changing the stats output,
+    allowing optional scaffolding and multiple rounds of Pebble.
+  * Added the programs velveth_de and velvetg_de to the package in /usr/bin,
+    and the scripts shuffleSequences_fasta.pl and shuffleSequences_fastq.pl in
+    /usr/share/velvet (debian/rules, debian/install).
+  * Refreshed debian/copyright. 
+  * Temporarly disabled the manpage generation of velvetg* because the --help
+    option is not available (debian/rules).
+
+ -- Charles Plessy <plessy at debian.org>  Tue, 09 Jun 2009 21:28:03 +0900
+
+velvet (0.7.31-1) unstable; urgency=low
+
+  * New upstream version
+  * Standards-Version: 3.8.1 (no changes needed)
+  * Create manpages using help2man
+  * Move third-party/layout and third-party/afg_handling to examples
+    because these scripts are actually not to run velvet but for
+    the convenience of users - in /urs/share/velvet these scripts
+    seem to be perfectly hidden and in /usr/share/doc/velvet might
+    create users attendance
+  * Added missing quilt entry in debian/rules
+
+ -- Andreas Tille <tille at debian.org>  Fri, 27 Mar 2009 13:23:32 +0100
+
+velvet (0.7.24-1) unstable; urgency=low
+
+  * Initial release (Closes: #487026)
+
+ -- Charles Plessy <plessy at debian.org>  Wed, 09 Jul 2008 14:06:55 +0900

Deleted: trunk/packages/velvet/tags/1.1.07~nozlibcopy-1/debian/control
===================================================================
--- trunk/packages/velvet/trunk/debian/control	2011-12-08 22:18:10 UTC (rev 8856)
+++ trunk/packages/velvet/tags/1.1.07~nozlibcopy-1/debian/control	2011-12-09 05:41:40 UTC (rev 8859)
@@ -1,44 +0,0 @@
-Source: velvet
-Section: science
-Priority: optional
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-DM-Upload-Allowed: yes
-Uploaders: Charles Plessy <plessy at debian.org>,
- Andreas Tille <tille at debian.org>
-Build-Depends: debhelper (>= 8), zlib1g-dev, help2man, quilt, texlive-latex-base
-Standards-Version: 3.9.2
-Homepage: http://www.ebi.ac.uk/~zerbino/velvet/
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/velvet/trunk/
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/velvet/trunk/
-
-Package: velvet
-Architecture: any
-Multi-Arch: foreign
-Depends: ${shlibs:Depends}, ${misc:Depends}
-Recommends: python
-Suggests: velvet-example
-Description: Nucleic acid sequence assembler for very short reads
- Velvet is a de novo genomic assembler specially designed for short read
- sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and
- Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near
- Cambridge, in the United Kingdom.
- .
- Velvet currently takes in short read sequences, removes errors then produces
- high quality unique contigs. It then uses paired read information, if
- available, to retrieve the repeated areas between contigs.
-
-Package: velvet-example
-Architecture: all
-Depends: ${misc:Depends}
-Description: Example data for the Velvet sequence assembler
- Velvet is a de novo genomic assembler specially designed for short read
- sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and
- Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near
- Cambridge, in the United Kingdom.
- .
- Velvet currently takes in short read sequences, removes errors then produces
- high quality unique contigs. It then uses paired read information, if
- available, to retrieve the repeated areas between contigs.
- .
- This package contains the example data distributed in the sources of Velvet,
- a de novo genomic assembler. 

Copied: trunk/packages/velvet/tags/1.1.07~nozlibcopy-1/debian/control (from rev 8858, trunk/packages/velvet/trunk/debian/control)
===================================================================
--- trunk/packages/velvet/tags/1.1.07~nozlibcopy-1/debian/control	                        (rev 0)
+++ trunk/packages/velvet/tags/1.1.07~nozlibcopy-1/debian/control	2011-12-09 05:41:40 UTC (rev 8859)
@@ -0,0 +1,45 @@
+Source: velvet
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+DM-Upload-Allowed: yes
+Uploaders: Charles Plessy <plessy at debian.org>,
+ Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 8), zlib1g-dev, help2man, quilt, texlive-latex-base
+Standards-Version: 3.9.2
+Homepage: http://www.ebi.ac.uk/~zerbino/velvet/
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/velvet/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/velvet/trunk/
+
+Package: velvet
+Architecture: any
+Pre-Depends: dpkg (>= 1.15.6)
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Recommends: python
+Suggests: velvet-example
+Description: Nucleic acid sequence assembler for very short reads
+ Velvet is a de novo genomic assembler specially designed for short read
+ sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and
+ Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near
+ Cambridge, in the United Kingdom.
+ .
+ Velvet currently takes in short read sequences, removes errors then produces
+ high quality unique contigs. It then uses paired read information, if
+ available, to retrieve the repeated areas between contigs.
+
+Package: velvet-example
+Architecture: all
+Pre-Depends: dpkg (>= 1.15.6)
+Depends: ${misc:Depends}
+Description: Example data for the Velvet sequence assembler
+ Velvet is a de novo genomic assembler specially designed for short read
+ sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and
+ Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near
+ Cambridge, in the United Kingdom.
+ .
+ Velvet currently takes in short read sequences, removes errors then produces
+ high quality unique contigs. It then uses paired read information, if
+ available, to retrieve the repeated areas between contigs.
+ .
+ This package contains the example data distributed in the sources of Velvet,
+ a de novo genomic assembler. 




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