[med-svn] [SCM] cufflinks annotated tag, debian/1.2.1-1, created. debian/1.2.1-1

[Charles Plessy]

The annotated tag, debian/1.2.1-1 has been created
        at  938ed585cc1b3c73b7a2b45429f3fbfdfe9a9c24 (tag)
   tagging  bc688cf117cdcf2a031bfd05ccb7ceff5a86183b (commit)
  replaces  upstream/1.2.1
 tagged by  Charles Plessy
        on  Sun Dec 11 12:51:22 2011 +0900

- Shortlog ------------------------------------------------------------
Uploaded cufflinks_1.2.1-1_amd64.changes to non-free.
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Alex Mestiashvili (10):
      new debian dir for cufflinks
      added headers for patches according http://dep.debian.net/deps/dep3/
      Imported upstream version 1.0.2
      added ITP number for the initial release
      added docs
      added missing dependency
      libbam-dev provides necessary headers only from 0.1.16 version . fixed in control file.
      Merge commit 'upstream/1.0.3'
      updated debian changelog .
      updated version and Locfit's author

Alexandre Mestiashvili (13):
      Merge commit 'upstream/1.1.0'
      Merge commit 'upstream/1.2.1'
      new upstream release 1.2.1
      bam.h located in /usr/include/samtools and not /usr/include/bam on Debian systems
      modified debian/rules
      added Build-Depends:dh-autoreconf
      no need to patch configure because we use dh $@ --with autoreconf
      updated debian/changelog
      added missing dependency - quilt . we use dh_quilt_patch,dh_quilt_unpatch heplers.
      debian/control added dependency python (>=2.6.6-3~)
      debian/control added dependency python (>=2.6.6-3~) for binary package
      debian/changelog line shouldn't be longer 80 columns
      Fixed spelling errors, reordered patches

Andreas Tille (6):
      Added missing Build-Depends zlib1g-dev
      Uploader name and changelog name need to be identical
      Added myself to uploaders
      Debhelper 8
      Removed dh-make template from watch file
      Invoke autotools-dev - however this does not solve the problem to fail to build from source twice in a row

Charles Plessy (22):
      Templates from dh-make version 0.55.
      Preliminary package.
      Build-Depend on libboost-dev (>= 1.40) | libboost1.40-dev to ease backports.
      Merge commit 'upstream/0.8.4'
      Merge commit 'upstream/0.9.0'
      Merge commit 'upstream/0.9.1'
      Merge commit 'upstream/0.9.2'
      Merge commit 'upstream/0.9.3'
      # New upstream release made patch un-necessary.
      # Unreleased draft package.
      # Draft package.
      # The copyright review is not yet done.
      Merge commit 'upstream/1.0.2'
      Add debian/gbp.conf to show the package is managed with git-buildpackage.
      Converted Debian copyright file to machine-readable format (DEP 5).
      Reviewed copyright and license notices, and found that locfit is non-free…
      No new copyright notices nor license statements in 1.2.1.
      Switch to non-free section because of the locfit license.
      Mark the previous releases as unreleased.
      Added myself to Uploaders.
      Compress binary package with xz.  Pre-depend on dpkg (>= 1.15.6) for Ubuntu LTS.
      Uploaded cufflinks_1.2.1-1_amd64.changes to non-free.

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Transcript assembly, differential expression, and differential regulation for RNA-Seq.