[med-svn] r8912 - in trunk/packages/exonerate/trunk/debian: . patches source

Andreas Tille tille at alioth.debian.org
Mon Dec 12 12:32:24 UTC 2011 

Author: tille
Date: 2011-12-12 12:32:24 +0000 (Mon, 12 Dec 2011)
New Revision: 8912

Added:
   trunk/packages/exonerate/trunk/debian/patches/
   trunk/packages/exonerate/trunk/debian/patches/fix_build-as-needed.patch
   trunk/packages/exonerate/trunk/debian/patches/series
   trunk/packages/exonerate/trunk/debian/source/
   trunk/packages/exonerate/trunk/debian/source/format
Modified:
   trunk/packages/exonerate/trunk/debian/changelog
   trunk/packages/exonerate/trunk/debian/compat
   trunk/packages/exonerate/trunk/debian/control
   trunk/packages/exonerate/trunk/debian/copyright
   trunk/packages/exonerate/trunk/debian/rules
Log:
Applied patch to build with --as-needed, packaging updates; However: FTBFS because of depending from aclocal-1.4


Modified: trunk/packages/exonerate/trunk/debian/changelog
===================================================================
--- trunk/packages/exonerate/trunk/debian/changelog	2011-12-12 10:23:52 UTC (rev 8911)
+++ trunk/packages/exonerate/trunk/debian/changelog	2011-12-12 12:32:24 UTC (rev 8912)
@@ -1,9 +1,24 @@
 exonerate (2.2.0-3) UNRELEASED; urgency=low
 
+  [ Charles Plessy ]
   * Documented some meta-information in ‘debian/upstream-metadata.yaml’.
 
- -- Charles Plessy <plessy at debian.org>  Sun, 03 Jan 2010 13:31:05 +0900
+  [ Andreas Tille ]
+  * debian/source/format: 3.0 (quilt)
+  * debian/control:
+    - Standards-Version: 3.9.2 (no changes needed)
+    - Fixed Vcs fields
+  * Debhlper 8 (control+compat)
+  * debian/copyright: some DEP5 changes
+  * debian/patches/fix_build-as-needed.patch: Fix build with --as-needed
+    (Thanks to Micah Gersten <micahg at ubuntu.com>)
+    Closes: #651802
+  * debian/rules:
+    - Adding quilt to apply the patch
+    - Fix clean target
 
+ -- Andreas Tille <tille at debian.org>  Mon, 12 Dec 2011 13:13:02 +0100
+
 exonerate (2.2.0-2) unstable; urgency=low
 
   [ Charles Plessy ]

Modified: trunk/packages/exonerate/trunk/debian/compat
===================================================================
--- trunk/packages/exonerate/trunk/debian/compat	2011-12-12 10:23:52 UTC (rev 8911)
+++ trunk/packages/exonerate/trunk/debian/compat	2011-12-12 12:32:24 UTC (rev 8912)
@@ -1 +1 @@
-7
+8

Modified: trunk/packages/exonerate/trunk/debian/control
===================================================================
--- trunk/packages/exonerate/trunk/debian/control	2011-12-12 10:23:52 UTC (rev 8911)
+++ trunk/packages/exonerate/trunk/debian/control	2011-12-12 12:32:24 UTC (rev 8912)
@@ -6,10 +6,10 @@
 Uploaders: Steffen Moeller <moeller at debian.org>,
  Charles Plessy <plessy at debian.org>,
  Andreas Tille <tille at debian.org>
-Build-Depends: debhelper (>= 7.1), autotools-dev, libglib2.0-dev, libreadline-dev, cdbs
-Standards-Version: 3.8.3
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/exonerate/trunk/?rev=0&sc=0
-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/exonerate/trunk/
+Build-Depends: debhelper (>= 8), autotools-dev, libglib2.0-dev, libreadline-dev, cdbs, quilt
+Standards-Version: 3.9.2
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/exonerate/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/exonerate/trunk/
 Homepage: http://www.ebi.ac.uk/~guy/exonerate/
 
 Package: exonerate

Modified: trunk/packages/exonerate/trunk/debian/copyright
===================================================================
--- trunk/packages/exonerate/trunk/debian/copyright	2011-12-12 10:23:52 UTC (rev 8911)
+++ trunk/packages/exonerate/trunk/debian/copyright	2011-12-12 12:32:24 UTC (rev 8912)
@@ -1,5 +1,5 @@
-Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat?action=recall&rev=129
-Upstream-Author: Guy St.C. Slater <guy AT ebi.ac.uk>
+Format: http://dep.debian.net/deps/dep5/
+Upstream-Contact: Guy St.C. Slater <guy AT ebi.ac.uk>
                                   <guy.slater AT gmail.com>
  The following have contributed code to this project:
  (in chronological order)
@@ -9,9 +9,7 @@
     Tim Cutts        <tjrc-AT-sanger.ac.uk>
     Don Gilbert      <gilbertd-AT-indiana.edu>
     Michael Schuster <michaels-AT-ebi.ac.uk>
-Packaged-By: This package was debianized by Steffen Moeller <moeller at debian.org>
-Packaged-Date: Mon, 02 Jul 2007 11:42:38 +0200
-Original-Source-Location: http://www.ebi.ac.uk/~guy/exonerate/exonerate-2.0.0.tar.gz
+Source: http://www.ebi.ac.uk/~guy/exonerate/exonerate-2.0.0.tar.gz
 
 Files: *
 Copyright: © 2000-2008 Guy St.C. Slater <guy AT ebi.ac.uk>
@@ -35,5 +33,6 @@
 Files: debian/*
 Copyright: © 2007 Steffen Moeller <moeller at debian.org>
            © 2008 Charles Plessy <plessy at debian.org>
+           © 2011 Andreas Tille <tille at debian.org>
 License: GPL-3+
  (see above)

Added: trunk/packages/exonerate/trunk/debian/patches/fix_build-as-needed.patch
===================================================================
--- trunk/packages/exonerate/trunk/debian/patches/fix_build-as-needed.patch	                        (rev 0)
+++ trunk/packages/exonerate/trunk/debian/patches/fix_build-as-needed.patch	2011-12-12 12:32:24 UTC (rev 8912)
@@ -0,0 +1,14 @@
+Author: Micah Gersten <micahg at ubuntu.com>
+Date: Mon, 12 Dec 2011 09:15:02 UTC
+Closes: #651802
+--- exonerate-2.2.0.orig/configure.in
++++ exonerate-2.2.0/configure.in
+@@ -289,7 +289,7 @@
+ if test "$enable_pthreads" = yes; then
+     echo "Using PTHREADS"
+     CFLAGS="$CFLAGS -DUSE_PTHREADS"
+-    LDFLAGS="$LDFLAGS -lpthread"
++    LIBS="$LIBS -lpthread"
+ elif test "$enable_pthreads" = no; then
+     echo "Not using pthreads"
+ else

Added: trunk/packages/exonerate/trunk/debian/patches/series
===================================================================
--- trunk/packages/exonerate/trunk/debian/patches/series	                        (rev 0)
+++ trunk/packages/exonerate/trunk/debian/patches/series	2011-12-12 12:32:24 UTC (rev 8912)
@@ -0,0 +1 @@
+fix_build-as-needed.patch

Modified: trunk/packages/exonerate/trunk/debian/rules
===================================================================
--- trunk/packages/exonerate/trunk/debian/rules	2011-12-12 10:23:52 UTC (rev 8911)
+++ trunk/packages/exonerate/trunk/debian/rules	2011-12-12 12:32:24 UTC (rev 8912)
@@ -2,5 +2,9 @@
 
 include /usr/share/cdbs/1/class/autotools.mk
 include /usr/share/cdbs/1/rules/debhelper.mk
+include /usr/share/cdbs/1/rules/patchsys-quilt.mk
 
 DEB_MAKE_CHECK_TARGET = -C test check
+
+clean::
+	rm -rf config.status

Added: trunk/packages/exonerate/trunk/debian/source/format
===================================================================
--- trunk/packages/exonerate/trunk/debian/source/format	                        (rev 0)
+++ trunk/packages/exonerate/trunk/debian/source/format	2011-12-12 12:32:24 UTC (rev 8912)
@@ -0,0 +1 @@
+3.0 (quilt)

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