[med-svn] r8919 - in trunk/packages/exonerate/trunk/debian: . patches

[Andreas Tille]

Author: tille
Date: 2011-12-12 13:55:23 +0000 (Mon, 12 Dec 2011)
New Revision: 8919

Added:
   trunk/packages/exonerate/trunk/debian/patches/manpages.patch
Modified:
   trunk/packages/exonerate/trunk/debian/changelog
   trunk/packages/exonerate/trunk/debian/docs
   trunk/packages/exonerate/trunk/debian/patches/autoreconf.patch
   trunk/packages/exonerate/trunk/debian/patches/series
   trunk/packages/exonerate/trunk/debian/rules
Log:
Tried to fix some manpage errors as an examble for upstream but did not finished; upload to unstable


Modified: trunk/packages/exonerate/trunk/debian/changelog
===================================================================
--- trunk/packages/exonerate/trunk/debian/changelog	2011-12-12 13:51:49 UTC (rev 8918)
+++ trunk/packages/exonerate/trunk/debian/changelog	2011-12-12 13:55:23 UTC (rev 8919)
@@ -1,4 +1,4 @@
-exonerate (2.2.0-3) UNRELEASED; urgency=low
+exonerate (2.2.0-3) unstable; urgency=low
 
   [ Charles Plessy ]
   * Documented some meta-information in ‘debian/upstream-metadata.yaml’.
@@ -13,9 +13,12 @@
   * debian/patches/fix_build-as-needed.patch: Fix build with --as-needed
     (Thanks to Micah Gersten <micahg at ubuntu.com>)
     Closes: #651802
+  * debian/patches/autoreconf.patch: Build with recent autotools
+  * debian/patches/manpages.patch: Fix some lintian warnings
   * debian/rules:
     - Convert to short dh notation
     - Remove codegen in clean target
+    - Install upstream changelog only once
 
  -- Andreas Tille <tille at debian.org>  Mon, 12 Dec 2011 13:13:02 +0100
 

Modified: trunk/packages/exonerate/trunk/debian/docs
===================================================================
--- trunk/packages/exonerate/trunk/debian/docs	2011-12-12 13:51:49 UTC (rev 8918)
+++ trunk/packages/exonerate/trunk/debian/docs	2011-12-12 13:55:23 UTC (rev 8919)
@@ -1,4 +1,3 @@
 README
 TODO
 AUTHORS
-ChangeLog

Modified: trunk/packages/exonerate/trunk/debian/patches/autoreconf.patch
===================================================================
--- trunk/packages/exonerate/trunk/debian/patches/autoreconf.patch	2011-12-12 13:51:49 UTC (rev 8918)
+++ trunk/packages/exonerate/trunk/debian/patches/autoreconf.patch	2011-12-12 13:55:23 UTC (rev 8919)
@@ -1,3 +1,8 @@
+Author: Andreas Tille <tille at debian.org>
+Date: Mon, 12 Dec 2011 13:13:02 +0100
+Description: Exonerate was build using aclocal-1.4 which was not supported
+ any more in Debian.  The patch was created using `autoreconf` to update
+ automake tools
 diff -ubrN exonerate-2.2.0.orig/aclocal.m4 exonerate-2.2.0/aclocal.m4
 --- exonerate-2.2.0.orig/aclocal.m4	2008-10-17 12:04:50.000000000 +0200
 +++ exonerate-2.2.0/aclocal.m4	2011-12-12 13:32:51.000000000 +0100

Added: trunk/packages/exonerate/trunk/debian/patches/manpages.patch
===================================================================
--- trunk/packages/exonerate/trunk/debian/patches/manpages.patch	                        (rev 0)
+++ trunk/packages/exonerate/trunk/debian/patches/manpages.patch	2011-12-12 13:55:23 UTC (rev 8919)
@@ -0,0 +1,47 @@
+Author: Andreas Tille <tille at debian.org>
+Date: Mon, 12 Dec 2011 13:13:02 +0100
+Description: Fix some errors in manpages.  More errors can be
+ found using
+   LC_ALL=en_US.UTF-8 MANWIDTH=80 man --warnings -E UTF-8 -l <file> >/dev/null
+--- exonerate-2.2.0.orig/doc/man/man1/exonerate.1
++++ exonerate-2.2.0/doc/man/man1/exonerate.1
+@@ -33,7 +33,6 @@
+ 
+ .RE
+ .SH CONVENTIONS
+-.T
+ A number of conventions (and idiosyncracies) are used within
+ exonerate.  An understanding of them facilitates interpretation
+ of the output.
+--- exonerate-2.2.0.orig/doc/man/man1/exonerate-server.1
++++ exonerate-2.2.0/doc/man/man1/exonerate-server.1
+@@ -19,7 +19,6 @@
+ 
+ .RE
+ .SH OVERVIEW
+-.T
+ .\"
+ Firstly, an
+ .B .esd
+--- exonerate-2.2.0.orig/doc/man/man1/fastautils.1
++++ exonerate-2.2.0/doc/man/man1/fastautils.1
+@@ -55,9 +55,6 @@
+ databases which are distributed with the exonerate sequence alignment
+ program.
+ .P
+-.\"
+-...
+-.\"
+ .RE
+ .\"
+ .SH ENVIRONMENT
+--- exonerate-2.2.0.orig/doc/man/man1/ipcress.1
++++ exonerate-2.2.0/doc/man/man1/ipcress.1
+@@ -35,7 +35,6 @@
+ .\"
+ .RE
+ .SH INPUT FORMAT
+-.T
+ The input for ipcress is a simple white-space delimited file
+ describing one experiment per line.  Each line contains
+ the following 5 fields:

Modified: trunk/packages/exonerate/trunk/debian/patches/series
===================================================================
--- trunk/packages/exonerate/trunk/debian/patches/series	2011-12-12 13:51:49 UTC (rev 8918)
+++ trunk/packages/exonerate/trunk/debian/patches/series	2011-12-12 13:55:23 UTC (rev 8919)
@@ -1,2 +1,3 @@
 autoreconf.patch
 fix_build-as-needed.patch
+manpages.patch

Modified: trunk/packages/exonerate/trunk/debian/rules
===================================================================
--- trunk/packages/exonerate/trunk/debian/rules	2011-12-12 13:51:49 UTC (rev 8918)
+++ trunk/packages/exonerate/trunk/debian/rules	2011-12-12 13:55:23 UTC (rev 8919)
@@ -13,3 +13,6 @@
 
 override_dh_auto_test:
 	$(MAKE) -C test check
+
+override_dh_installchangelogs:
+	dh_installchangelogs -k ChangeLog