[med-svn] r8948 - in trunk/packages/bioperl/trunk/debian: . source

[Andreas Tille]

Author: tille
Date: 2011-12-14 09:06:32 +0000 (Wed, 14 Dec 2011)
New Revision: 8948

Added:
   trunk/packages/bioperl/trunk/debian/source/
   trunk/packages/bioperl/trunk/debian/source/format
Modified:
   trunk/packages/bioperl/trunk/debian/changelog
   trunk/packages/bioperl/trunk/debian/control
Log:
Applied patch by Luca Capello, source format 3.0 (quilt)


Modified: trunk/packages/bioperl/trunk/debian/changelog
===================================================================
--- trunk/packages/bioperl/trunk/debian/changelog	2011-12-14 07:36:54 UTC (rev 8947)
+++ trunk/packages/bioperl/trunk/debian/changelog	2011-12-14 09:06:32 UTC (rev 8948)
@@ -1,3 +1,18 @@
+bioperl (1.6.901-2) unstable; urgency=low
+
+  [ Luca Capello ]
+  * debian/control:
+    + add Recommends: to some libraries already in libbio-perl-perl's
+      for binaries showing help output (Closes: #650412).
+  * debian/README.Debian:
+    + new file with a more detailed explanation about the above.
+
+  [ Andreas Tille ]
+  * debian/source/format: 3.0 (quilt)
+  * Added myself to Uploaders
+
+ -- Andreas Tille <tille at debian.org>  Wed, 14 Dec 2011 09:11:41 +0100
+
 bioperl (1.6.901-1) unstable; urgency=low
 
   * New upstream release.

Modified: trunk/packages/bioperl/trunk/debian/control
===================================================================
--- trunk/packages/bioperl/trunk/debian/control	2011-12-14 07:36:54 UTC (rev 8947)
+++ trunk/packages/bioperl/trunk/debian/control	2011-12-14 09:06:32 UTC (rev 8948)
@@ -5,6 +5,7 @@
 DM-Upload-Allowed: yes
 Uploaders: Charles Plessy <plessy at debian.org>,
  Steffen Moeller <moeller at debian.org>,
+ Andreas Tille <tille at debian.org>
 Build-Depends: debhelper (>= 8)
 Build-Depends-Indep: perl, perl-modules (>= 5.10.1),
  libio-string-perl,
@@ -54,13 +55,70 @@
 Package: bioperl
 Architecture: all
 Depends: libbio-perl-perl ( = ${source:Version} ), ${misc:Depends}, ${perl:Depends}
-Recommends: bioperl-run ( >= 1.6.0 )
+Recommends: bioperl-run ( >= 1.6.0 ),
+# for the following see #650412
+# most of `binary -help` outputs
+ perl-doc,
+# some libraries already in libbio-perl-perl's Recommends:
+# bp_biofetch_genbank_proxy
+ libhttp-message-perl,
+ libwww-perl,
+ libcache-cache-perl,
+# bp_blast2tree
+ libbio-perl-run-perl,
+# bp_bulk_load_gff
+ libdbi-perl,
+# bp_chaos_plot
+ libgd-gd2-perl,
+# bp_das_server
+ libapache-dbi-perl,
+# bp_download_query_genbank
+ liburi-perl,
+# bp_einfo
+#	liburi-perl
+#	libhttp-message-perl
+ libxml-simple-perl,
+# bp_fast_load_gff
+#	libdbi-perl
+# bp_fetch [not for local indexing]
+# bp_flanks
+#	libhttp-message-perl
+# bp_genbank2gff
+#	libhttp-message-perl
+#	libdbi-perl
+# bp_genbank2gff3
+ libyaml-perl,
+# bp_hivq
+#	libhttp-message-perl
+#	libxml-simple-perl
+# bp_meta_gff
+#	libdbi-perl
+# bp_netinstall
+# bp_pairwise_kaks
+#	libbio-perl-run-perl
+# bp_process_wormbase
+ libace-perl,
+# bp_query_entrez_taxa
+# bp_remote_blast
+# bp_revtrans-motif
+ liblist-moreutils-perl,
+# bp_taxid4species
+ libxml-twig-perl,
+# bp_taxonomy2tree
+ libset-scalar-perl
+Suggests: groff-base
 Description: Perl tools for computational molecular biology
  The Bioperl project is a coordinated effort to collect computational methods
  routinely used in bioinformatics into a set of standard CPAN-style,
  well-documented, and freely available Perl modules. It is well-accepted
  throughout the community and used in many high-profile projects, e.g.,
  Ensembl.
+ .
+ The recommended packages are needed to run some of the included
+ binaries, for a detailed explanation including the specific Perl
+ modules please see README.Debian.
+ .
+ The suggested package enhances the manual pages.
 
 Package: libbio-perl-perl
 Section: perl

Added: trunk/packages/bioperl/trunk/debian/source/format
===================================================================
--- trunk/packages/bioperl/trunk/debian/source/format	                        (rev 0)
+++ trunk/packages/bioperl/trunk/debian/source/format	2011-12-14 09:06:32 UTC (rev 8948)
@@ -0,0 +1 @@
+3.0 (quilt)