[med-svn] r8976 - trunk/packages/eigensoft/trunk/debian

[Steffen Möller]

Author: moeller
Date: 2011-12-15 10:48:31 +0000 (Thu, 15 Dec 2011)
New Revision: 8976

Modified:
   trunk/packages/eigensoft/trunk/debian/changelog
   trunk/packages/eigensoft/trunk/debian/control
   trunk/packages/eigensoft/trunk/debian/copyright
   trunk/packages/eigensoft/trunk/debian/eigensoft.install
   trunk/packages/eigensoft/trunk/debian/rules
Log:
First upload. Better separating eigensoft and eigenstrat.


Modified: trunk/packages/eigensoft/trunk/debian/changelog
===================================================================
--- trunk/packages/eigensoft/trunk/debian/changelog	2011-12-15 09:40:02 UTC (rev 8975)
+++ trunk/packages/eigensoft/trunk/debian/changelog	2011-12-15 10:48:31 UTC (rev 8976)
@@ -1,4 +1,4 @@
-eigensoft (4.2-1) UNRELEASED; urgency=low
+eigensoft (4.2-1) experimental; urgency=low
 
   * New upstream release.
 

Modified: trunk/packages/eigensoft/trunk/debian/control
===================================================================
--- trunk/packages/eigensoft/trunk/debian/control	2011-12-15 09:40:02 UTC (rev 8975)
+++ trunk/packages/eigensoft/trunk/debian/control	2011-12-15 10:48:31 UTC (rev 8976)
@@ -33,5 +33,7 @@
 Section: non-free/debug
 Depends: ${misc:Depends}, eigensoft (= ${binary:Version})
 Description: debug symbols for the eigensoft package
- This package should be installed prior to reporting reproducible
- crashes to the developers.
+ The EIGENSOFT package helps with distinguishing inherited differences in
+ populations from those that are discriminating patients from non-affected
+ individuals. This debug package adds symbols that help with the location
+ of the problem when an unexpected crash of the program occurs.

Modified: trunk/packages/eigensoft/trunk/debian/copyright
===================================================================
--- trunk/packages/eigensoft/trunk/debian/copyright	2011-12-15 09:40:02 UTC (rev 8975)
+++ trunk/packages/eigensoft/trunk/debian/copyright	2011-12-15 10:48:31 UTC (rev 8976)
@@ -1,10 +1,12 @@
 Format: http://dep.debian.net/deps/dep5
-Upstream-Name: eigenstrat
+Upstream-Name: eigensoft
 Source: http://www.hsph.harvard.edu/faculty/alkes-price/software/
 
 Files: *
+Authors:   Alkes Price <aprice at hsph.harvard.edu>,
+	   Nick Patterson <nickp at broadinstitute.org>,
+	   Samuela Pollack <spollack at hsph.harvard.edu>
 Copyright: 2010 Harvard University and The Broad Institute
-	   Samuela Pollack <spollack at hsph.harvard.edu>
 
 License: 
  SOFTWARE COPYRIGHT NOTICE AGREEMENT

Modified: trunk/packages/eigensoft/trunk/debian/eigensoft.install
===================================================================
--- trunk/packages/eigensoft/trunk/debian/eigensoft.install	2011-12-15 09:40:02 UTC (rev 8975)
+++ trunk/packages/eigensoft/trunk/debian/eigensoft.install	2011-12-15 10:48:31 UTC (rev 8976)
@@ -1,4 +1,4 @@
 bin/*       usr/bin
-CONVERTF    usr/share/eigenstrat
-EIGENSTRAT  usr/share/eigenstrat
-POPGEN      usr/share/eigenstrat
+CONVERTF    usr/share/eigensoft
+EIGENSTRAT  usr/share/eigensoft
+POPGEN      usr/share/eigensoft

Modified: trunk/packages/eigensoft/trunk/debian/rules
===================================================================
--- trunk/packages/eigensoft/trunk/debian/rules	2011-12-15 09:40:02 UTC (rev 8975)
+++ trunk/packages/eigensoft/trunk/debian/rules	2011-12-15 10:48:31 UTC (rev 8976)
@@ -23,6 +23,11 @@
 override_dh_strip:
 	dh_strip --dbg-package=eigensoft-dbg
 
+override_dh_install:
+	dh_install
+	# the file is empty
+	rm -f debian/eigensoft/usr/share/eigen*/POPGEN/HGDP.X.perl
+
 VERSION=4.2
 get-orig-source:
 	[ -r ../eig$(VERSION).tar.gz ] || wget http://www.hsph.harvard.edu/faculty/alkes-price/files/eig$(VERSION).tar.gz -O ../eig$(VERSION).tar.gz