[med-svn] [SCM] tophat branch, master, updated. upstream/1.3.1-4-g095efb1

[Alexandre Mestiashvili]

The following commit has been merged in the master branch:
commit e0b71d313b86b889907f817472ed670c6349b00e
Merge: 0571075d85f2d20aab8f3bcc5992a10f29a60051 61e51bb4f1237b3a51b718cafde70b863d00ab5d
Author: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>
Date:   Thu Dec 15 16:59:55 2011 +0100

    Merge commit 'upstream/1.3.3'


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A spliced read mapper for RNA-Seq