[med-svn] r9036 - trunk/packages/fastlink/trunk/debian
Andreas Tille
tille at alioth.debian.org
Mon Dec 19 09:54:52 UTC 2011
Author: tille
Date: 2011-12-19 09:54:51 +0000 (Mon, 19 Dec 2011)
New Revision: 9036
Added:
trunk/packages/fastlink/trunk/debian/menu
Removed:
trunk/packages/fastlink/trunk/debian/ilink.desktop
trunk/packages/fastlink/trunk/debian/linkmap.desktop
trunk/packages/fastlink/trunk/debian/lodscore.desktop
trunk/packages/fastlink/trunk/debian/mlink.desktop
trunk/packages/fastlink/trunk/debian/unknown.desktop
Modified:
trunk/packages/fastlink/trunk/debian/changelog
trunk/packages/fastlink/trunk/debian/compat
trunk/packages/fastlink/trunk/debian/control
trunk/packages/fastlink/trunk/debian/fastlink.install
Log:
Do not use freedesktop.org menu system but rather Debian Menu to not confuse users of modern desktops
Modified: trunk/packages/fastlink/trunk/debian/changelog
===================================================================
--- trunk/packages/fastlink/trunk/debian/changelog 2011-12-19 02:56:56 UTC (rev 9035)
+++ trunk/packages/fastlink/trunk/debian/changelog 2011-12-19 09:54:51 UTC (rev 9036)
@@ -1,3 +1,17 @@
+fastlink (4.1P-fix95-3) unstable; urgency=low
+
+ * Replaced debian/*.desktop by debian/menu to make sure users of
+ modern desktop systems using freedesktop.org standards will not
+ be confused by a missing graphical interface
+ Closes: #639998
+ * debian/control:
+ - Standards-Version: 3.9.2 (no changes needed)
+ - Fixed Vcs fields
+ - Dropped article in short description
+ * Debhelper 8 (control+compat)
+
+ -- Andreas Tille <tille at debian.org> Mon, 19 Dec 2011 10:34:20 +0100
+
fastlink (4.1P-fix95-2) unstable; urgency=low
* debian/copyright: Fixed source download location
Modified: trunk/packages/fastlink/trunk/debian/compat
===================================================================
--- trunk/packages/fastlink/trunk/debian/compat 2011-12-19 02:56:56 UTC (rev 9035)
+++ trunk/packages/fastlink/trunk/debian/compat 2011-12-19 09:54:51 UTC (rev 9036)
@@ -1 +1 @@
-7
+8
Modified: trunk/packages/fastlink/trunk/debian/control
===================================================================
--- trunk/packages/fastlink/trunk/debian/control 2011-12-19 02:56:56 UTC (rev 9035)
+++ trunk/packages/fastlink/trunk/debian/control 2011-12-19 09:54:51 UTC (rev 9036)
@@ -5,18 +5,18 @@
DM-Upload-Allowed: yes
Uploaders: Andreas Tille <tille at debian.org>,
Charles Plessy <plessy at debian.org>
-Build-Depends: cdbs, debhelper (>= 7)
-Standards-Version: 3.9.1
+Build-Depends: cdbs, debhelper (>= 8)
+Standards-Version: 3.9.2
Homepage: http://www.ncbi.nlm.nih.gov/CBBResearch/Schaffer/fastlink.html
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/fastlink/?rev=0&sc=0
-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/fastlink/trunk/
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/fastlink/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/fastlink/trunk/
Package: fastlink
Architecture: any
Section: science
Depends: ${shlibs:Depends}, ${misc:Depends}
Suggests: fastlink-doc
-Description: A faster version of pedigree programs of Linkage
+Description: faster version of pedigree programs of Linkage
Genetic linkage analysis is a statistical technique used to map
genes and find the approximate location of disease genes. There
was a standard software package for genetic linkage called
Modified: trunk/packages/fastlink/trunk/debian/fastlink.install
===================================================================
--- trunk/packages/fastlink/trunk/debian/fastlink.install 2011-12-19 02:56:56 UTC (rev 9035)
+++ trunk/packages/fastlink/trunk/debian/fastlink.install 2011-12-19 09:54:51 UTC (rev 9036)
@@ -3,4 +3,3 @@
4.1P/src/linkmap usr/bin
4.1P/src/mlink usr/bin
4.1P/src/unknown usr/bin
-debian/*.desktop usr/share/applications
Deleted: trunk/packages/fastlink/trunk/debian/ilink.desktop
===================================================================
--- trunk/packages/fastlink/trunk/debian/ilink.desktop 2011-12-19 02:56:56 UTC (rev 9035)
+++ trunk/packages/fastlink/trunk/debian/ilink.desktop 2011-12-19 09:54:51 UTC (rev 9036)
@@ -1,11 +0,0 @@
-[Desktop Entry]
-Version=1.0
-Terminal=false
-Exec=ilink
-Name=ilink
-GenericName=Fastlink GEMINI optimization
-GenericName[en]=Fastlink GEMINI optimization
-Comment=GEMINI optimization procedure to find a locally optimal value of the theta vector of recombination fractions
-Comment[en]=GEMINI optimization procedure to find a locally optimal value of the theta vector of recombination fractions
-Type=Application
-Categories=Biology;Science;Education;
Deleted: trunk/packages/fastlink/trunk/debian/linkmap.desktop
===================================================================
--- trunk/packages/fastlink/trunk/debian/linkmap.desktop 2011-12-19 02:56:56 UTC (rev 9035)
+++ trunk/packages/fastlink/trunk/debian/linkmap.desktop 2011-12-19 09:54:51 UTC (rev 9036)
@@ -1,11 +0,0 @@
-[Desktop Entry]
-Version=1.0
-Terminal=false
-Exec=linkmap
-Name=linkmap
-GenericName=Fastlink location scores
-GenericName[en]=Fastlink location scores
-Comment=Calculates location scores of one locus against a fixed map of other loci
-Comment[en]=Calculates location scores of one locus against a fixed map of other loci
-Type=Application
-Categories=Biology;Science;Education;
Deleted: trunk/packages/fastlink/trunk/debian/lodscore.desktop
===================================================================
--- trunk/packages/fastlink/trunk/debian/lodscore.desktop 2011-12-19 02:56:56 UTC (rev 9035)
+++ trunk/packages/fastlink/trunk/debian/lodscore.desktop 2011-12-19 09:54:51 UTC (rev 9036)
@@ -1,11 +0,0 @@
-[Desktop Entry]
-Version=1.0
-Terminal=false
-Exec=lodscore
-Name=lodscore
-GenericName=Fastlink compare likelihoods
-GenericName[en]=Fastlink compare likelihoods
-Comment=Compares likelihoods at locally optimal theta
-Comment[en]=Compares likelihoods at locally optimal theta
-Type=Application
-Categories=Biology;Science;Education;
Added: trunk/packages/fastlink/trunk/debian/menu
===================================================================
--- trunk/packages/fastlink/trunk/debian/menu (rev 0)
+++ trunk/packages/fastlink/trunk/debian/menu 2011-12-19 09:54:51 UTC (rev 9036)
@@ -0,0 +1,15 @@
+?package(fastlink):needs="text" section="Applications/Science/Biology"\
+ title="Fastlink GEMINI optimization" command="/usr/bin/ilink" \
+ hints="GEMINI optimization procedure to find a locally optimal value of the theta vector of recombination fractions"
+?package(fastlink):needs="text" section="Applications/Science/Biology"\
+ title="Fastlink location scores" command="/usr/bin/linkmap" \
+ hints="Calculates location scores of one locus against a fixed map of other loci"
+?package(fastlink):needs="text" section="Applications/Science/Biology"\
+ title="Fastlink compare likelihoods" command="/usr/bin/lodscore" \
+ hints="Compares likelihoods at locally optimal theta "
+?package(fastlink):needs="text" section="Applications/Science/Biology"\
+ title="Fastlink lod scores" command="/usr/bin/mlink" \
+ hints="Calculate lod scores and risk with two of more loci"
+?package(fastlink):needs="text" section="Applications/Science/Biology"\
+ title="Fastlink identify genotypes" command="/usr/bin/unknown" \
+ hints="Identify possible genotypes for unknowns"
Deleted: trunk/packages/fastlink/trunk/debian/mlink.desktop
===================================================================
--- trunk/packages/fastlink/trunk/debian/mlink.desktop 2011-12-19 02:56:56 UTC (rev 9035)
+++ trunk/packages/fastlink/trunk/debian/mlink.desktop 2011-12-19 09:54:51 UTC (rev 9036)
@@ -1,11 +0,0 @@
-[Desktop Entry]
-Version=1.0
-Terminal=false
-Exec=mlink
-Name=mlink
-GenericName=Fastlink lod scores
-GenericName[en]=Fastlink lod scores
-Comment=Calculate lod scores and risk with two of more loci
-Comment[en]=Calculate lod scores and risk with two of more loci
-Type=Application
-Categories=Biology;Science;Education;
Deleted: trunk/packages/fastlink/trunk/debian/unknown.desktop
===================================================================
--- trunk/packages/fastlink/trunk/debian/unknown.desktop 2011-12-19 02:56:56 UTC (rev 9035)
+++ trunk/packages/fastlink/trunk/debian/unknown.desktop 2011-12-19 09:54:51 UTC (rev 9036)
@@ -1,11 +0,0 @@
-[Desktop Entry]
-Version=1.0
-Terminal=false
-Exec=unknown
-Name=unknown
-GenericName=Fastlink identify genotypes
-GenericName[en]=Fastlink identify genotypes
-Comment=Identify possible genotypes for unknowns
-Comment[en]=Identify possible genotypes for unknowns
-Type=Application
-Categories=Biology;Science;Education;
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