[med-svn] r9071 - in trunk/packages: . sofa-framework/trunk/debian spread spread/trunk spread/trunk/debian spread/trunk/debian/source

[Andreas Tille]

Author: tille
Date: 2011-12-21 08:24:34 +0000 (Wed, 21 Dec 2011)
New Revision: 9071

Added:
   trunk/packages/spread/
   trunk/packages/spread/trunk/
   trunk/packages/spread/trunk/debian/
   trunk/packages/spread/trunk/debian/changelog
   trunk/packages/spread/trunk/debian/compat
   trunk/packages/spread/trunk/debian/control
   trunk/packages/spread/trunk/debian/source/
   trunk/packages/spread/trunk/debian/source/format
   trunk/packages/spread/trunk/debian/watch
Modified:
   trunk/packages/sofa-framework/trunk/debian/get-orig-source
Log:
Inject a kickstart for packaging spread.  More to come.  /  Forgot to commit a minor change in sofa-framework get-orig-source


Modified: trunk/packages/sofa-framework/trunk/debian/get-orig-source
===================================================================
--- trunk/packages/sofa-framework/trunk/debian/get-orig-source	2011-12-21 05:39:19 UTC (rev 9070)
+++ trunk/packages/sofa-framework/trunk/debian/get-orig-source	2011-12-21 08:24:34 UTC (rev 9071)
@@ -43,5 +43,7 @@
 
 cd ..
 
+# might need to mangle version (untested)
+VERSION=`echo ${VERSION} | sed 's/\([0-9]\)-\([br]\)/\1~\2/'`
 GZIP="--best --no-name" tar czf sofa-framework_${VERSION}.orig.tar.gz ${OUTPUTDIR}
 rm -rf ${OUTPUTDIR}

Added: trunk/packages/spread/trunk/debian/changelog
===================================================================
--- trunk/packages/spread/trunk/debian/changelog	                        (rev 0)
+++ trunk/packages/spread/trunk/debian/changelog	2011-12-21 08:24:34 UTC (rev 9071)
@@ -0,0 +1,5 @@
+phy-spread (1.0.2-1) UNRELEASED; urgency=low
+
+  * Initial release. (Closes: )
+
+ -- Andreas Tille <tille at debian.org>  Wed, 21 Dec 2011 09:18:47 +0100

Added: trunk/packages/spread/trunk/debian/compat
===================================================================
--- trunk/packages/spread/trunk/debian/compat	                        (rev 0)
+++ trunk/packages/spread/trunk/debian/compat	2011-12-21 08:24:34 UTC (rev 9071)
@@ -0,0 +1 @@
+8

Added: trunk/packages/spread/trunk/debian/control
===================================================================
--- trunk/packages/spread/trunk/debian/control	                        (rev 0)
+++ trunk/packages/spread/trunk/debian/control	2011-12-21 08:24:34 UTC (rev 9071)
@@ -0,0 +1,27 @@
+Source: phy-spread
+Section: non-free/science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+DM-Upload-Allowed: yes
+Uploaders: Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 8), javahelper (>=0.25),
+ ant, ant-optional, openjdk-6-jdk | default-jdk
+Standards-Version: 3.9.2
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/phy-spread/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/phy-spread/trunk/
+XS-Autobuild: yes
+Homepage: http://www.kuleuven.be/aidslab/phylogeography/SPREAD.html
+
+Package: phy-spread
+Architecture: all
+Depends: ${shlibs:Depends}, ${misc:Depends}, openjdk-6-jre | java-jre
+Description: analyze and visualize phylogeographic reconstructions
+ SPREAD is a user-friendly application to analyze and visualize
+ phylogeographic reconstructions resulting from Bayesian inference of
+ spatio-temporal diffusion.
+ .
+ There is a tutorial for SPREAD online at
+ http://www.kuleuven.be/aidslab/phylogeography/tutorial/spread_tutorial.html
+ .
+ Originally this program is named "spread".  However, there is just such a
+ package inside Debian and thus a 'phy' for phylogeny was prepended.

Added: trunk/packages/spread/trunk/debian/source/format
===================================================================
--- trunk/packages/spread/trunk/debian/source/format	                        (rev 0)
+++ trunk/packages/spread/trunk/debian/source/format	2011-12-21 08:24:34 UTC (rev 9071)
@@ -0,0 +1 @@
+3.0 (quilt)

Added: trunk/packages/spread/trunk/debian/watch
===================================================================
--- trunk/packages/spread/trunk/debian/watch	                        (rev 0)
+++ trunk/packages/spread/trunk/debian/watch	2011-12-21 08:24:34 UTC (rev 9071)
@@ -0,0 +1,5 @@
+version=3
+http://www.kuleuven.be/aidslab/phylogeography/SPREAD.html \
+  https://github.com/.*/phylogeography/SPREAD/spread-([.\d]+)\.tar\.gz
+
+# https://github.com/phylogeography/spread/tags .*/tarball/(.*)