[med-svn] r9086 - trunk/packages/seq-gen/trunk/debian

[Alex Mestiashvili]

Author: malex-guest
Date: 2011-12-23 15:50:23 +0000 (Fri, 23 Dec 2011)
New Revision: 9086

Modified:
   trunk/packages/seq-gen/trunk/debian/changelog
   trunk/packages/seq-gen/trunk/debian/control
   trunk/packages/seq-gen/trunk/debian/copyright
   trunk/packages/seq-gen/trunk/debian/get-orig-source
Log:
New upstream release. 
Updated copyright contains non free parts  ,get-orig-source cleans unneded
files.


Modified: trunk/packages/seq-gen/trunk/debian/changelog
===================================================================
--- trunk/packages/seq-gen/trunk/debian/changelog	2011-12-23 14:19:40 UTC (rev 9085)
+++ trunk/packages/seq-gen/trunk/debian/changelog	2011-12-23 15:50:23 UTC (rev 9086)
@@ -1,6 +1,12 @@
+seq-gen (1.3.3-1) unstable; urgency=low
+
+  * New upstream release 1.3.3 
+
+ -- Alexandre Mestiashvili <alex at biotec.tu-dresden.de>  Fri, 23 Dec 2011 10:55:46 +0100
+
 seq-gen (1.3.2-2) unstable; urgency=low
 
-  [ Alex Mestiashvili ]
+  [ Alexandre Mestiashvili ]
   * fixed syntax-error-in-dep5-copyright warning  
 
   [ Andreas Tille ]
@@ -16,4 +22,4 @@
 
   * Initial release (Closes: #617340) 
 
- -- Alex Mestiashvili <alex at biotec.tu-dresden.de>  Thu, 03 Mar 2011 14:58:34 +0000
+ -- Alexandre Mestiashvili <alex at biotec.tu-dresden.de>  Thu, 03 Mar 2011 14:58:34 +0000

Modified: trunk/packages/seq-gen/trunk/debian/control
===================================================================
--- trunk/packages/seq-gen/trunk/debian/control	2011-12-23 14:19:40 UTC (rev 9085)
+++ trunk/packages/seq-gen/trunk/debian/control	2011-12-23 15:50:23 UTC (rev 9086)
@@ -3,7 +3,7 @@
 Priority: optional
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 DM-Upload-Allowed: yes
-Uploaders: Alex Mestiashvili <alex at biotec.tu-dresden.de>,
+Uploaders: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>,
  Andreas Tille <tille at debian.org>
 Build-Depends: debhelper (>= 8)
 Standards-Version: 3.9.2

Modified: trunk/packages/seq-gen/trunk/debian/copyright
===================================================================
--- trunk/packages/seq-gen/trunk/debian/copyright	2011-12-23 14:19:40 UTC (rev 9085)
+++ trunk/packages/seq-gen/trunk/debian/copyright	2011-12-23 15:50:23 UTC (rev 9086)
@@ -3,10 +3,42 @@
 Source: http://tree.bio.ed.ac.uk/software/seqgen/
 
 Files: *
-Copyright: Copyright (c)1996-2004, Andrew Rambaut & Nick Grassly
-   Department of Zoology, University of Oxford                  
+Copyright: © Copyright (c)1996-2011, Andrew Rambaut & Nick Grassly
+   Institute of Evolutionary Biology, University of Edinburgh
    All rights reserved.                          
 License: BSD
+
+Files: source/eigen.*
+Copyright: © Copyright (c)1993-2008, Ziheng Yang
+License: PAML
+
+Files: source/gamma.*
+Copyright: © Copyright (c)1993-2008, Ziheng Yang
+License: PAML
+
+Files: source/twister.c
+Copyright: © Copyright (C) 1997 - 2002, Makoto Matsumoto and Takuji Nishimura,
+   All rights reserved.
+License: BSD
+
+Files: debian/*
+Copyright: 2011 Alex Mestiashvili <alex at biotec.tu-dresden.de>
+License: BSD
+ Like seq-gen itself
+
+License: PAML
+ The software package is provided "as is" without warranty of any kind. In no
+ event shall the author or his employer be held
+ responsible for any damage resulting from the use of this software, including
+ but not limited to the frustration that you may
+ experience in using the package. The program package, including source codes,
+ example data sets, executables, and this
+ documentation, is distributed free of charge for academic use only. Permission
+ is granted to copy and use programs in the
+ package provided no fee is charged for it and provided that this copyright
+ notice is not removed.
+
+License: BSD
  Redistribution and use in source and binary forms, with or without
  modification, are permitted provided that the following conditions
  are met:
@@ -34,7 +66,3 @@
  NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
  SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 
-Files: debian/*
-Copyright: 2011 Alex Mestiashvili <alex at biotec.tu-dresden.de>
-License: BSD
- Like seq-gen itself

Modified: trunk/packages/seq-gen/trunk/debian/get-orig-source
===================================================================
--- trunk/packages/seq-gen/trunk/debian/get-orig-source	2011-12-23 14:19:40 UTC (rev 9085)
+++ trunk/packages/seq-gen/trunk/debian/get-orig-source	2011-12-23 15:50:23 UTC (rev 9086)
@@ -27,6 +27,7 @@
 tar -xvzf ../tarballs/${PKG}_${VERSION}.tgz -C ../tarballs/${PKG}-${VERSION}/ --strip-components=1
 
 cd ../tarballs
+find ${PKG}-${VERSION}/ -type f -name "._*" -exec rm -f '{}' \;
 GZIP="--best --no-name" tar -czf "$PKG"_"$VERSION".orig.tar.gz "$PKG"-"$VERSION"
 rm -rf "$PKG"-"$VERSION"
 rm -f "$PKG"_"$VERSION.tgz"