[med-svn] r5910 - trunk/packages/R/r-other-genabel/trunk/debian

[Andreas Tille]

Author: tille
Date: 2011-02-05 19:48:10 +0000 (Sat, 05 Feb 2011)
New Revision: 5910

Removed:
   trunk/packages/R/r-other-genabel/trunk/debian/TODO
Modified:
   trunk/packages/R/r-other-genabel/trunk/debian/changelog
   trunk/packages/R/r-other-genabel/trunk/debian/control
   trunk/packages/R/r-other-genabel/trunk/debian/rules
Log:
Worked down the TODO item; some more polishing; please consider the remarks in changelog, but I have no strong opinion onto it


Deleted: trunk/packages/R/r-other-genabel/trunk/debian/TODO
===================================================================
--- trunk/packages/R/r-other-genabel/trunk/debian/TODO	2011-02-05 18:16:16 UTC (rev 5909)
+++ trunk/packages/R/r-other-genabel/trunk/debian/TODO	2011-02-05 19:48:10 UTC (rev 5910)
@@ -1,14 +0,0 @@
-
-How should this be done most efficiently?
-
-W: r-cran-genabel: executable-not-elf-or-script ./usr/lib/R/site-library/GenABEL/exdata/srphenos.dat
-W: r-cran-genabel: executable-not-elf-or-script ./usr/lib/R/site-library/GenABEL/exdata/map.18
-W: r-cran-genabel: executable-not-elf-or-script ./usr/lib/R/site-library/GenABEL/exdata/pedin.18
-W: r-cran-genabel: executable-not-elf-or-script ./usr/lib/R/site-library/GenABEL/doc/index.html
-W: r-cran-genabel: executable-not-elf-or-script ./usr/lib/R/site-library/GenABEL/doc/GenABEL-manual.pdf
-W: r-cran-genabel: executable-not-elf-or-script ./usr/lib/R/site-library/GenABEL/doc/ABEL-tutorial.pdf
-W: r-cran-genabel: executable-not-elf-or-script ./usr/lib/R/site-library/GenABEL/exdata/srgenos.dat
-W: r-cran-genabel: executable-not-elf-or-script ./usr/lib/R/site-library/GenABEL/exdata/chr18.raw
-W: r-cran-genabel: executable-not-elf-or-script ./usr/lib/R/site-library/GenABEL/exdata/srgenos.raw
-W: r-cran-genabel: executable-not-elf-or-script ./usr/lib/R/site-library/GenABEL/exdata/phenos.18
-

Modified: trunk/packages/R/r-other-genabel/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-other-genabel/trunk/debian/changelog	2011-02-05 18:16:16 UTC (rev 5909)
+++ trunk/packages/R/r-other-genabel/trunk/debian/changelog	2011-02-05 19:48:10 UTC (rev 5910)
@@ -1,3 +1,24 @@
+r-cran-genabel (1.6-4-2) UNRELEASED; urgency=low
+
+  * debian/control:
+    - added myself to uploaders
+    - debhelper 7
+    - changed section to gnu-r
+  * debian/rules:
+    - fix permissions of files that should not be executable
+    - Added *commented* code which enables to require a number equal or
+      superior than the R version the package was built with which is
+      used in other Debian Med maintained R packages
+  * debian/TODO:
+    Removed because it is done
+
+  REMARK: I'd consider two further changes:
+    - require a number equal or superior than the R version the package was
+      built with which is used in other Debian Med maintained R packages
+    - splitting arch independent docs into separate package
+
+ -- Andreas Tille <tille at debian.org>  Sat, 05 Feb 2011 20:00:13 +0100
+
 r-cran-genabel (1.6-4-1) unstable; urgency=low
 
   * New upstream release.

Modified: trunk/packages/R/r-other-genabel/trunk/debian/control
===================================================================
--- trunk/packages/R/r-other-genabel/trunk/debian/control	2011-02-05 18:16:16 UTC (rev 5909)
+++ trunk/packages/R/r-other-genabel/trunk/debian/control	2011-02-05 19:48:10 UTC (rev 5910)
@@ -1,9 +1,10 @@
 Source: r-cran-genabel
-Section: science
+Section: gnu-r
 Priority: optional
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Steffen Moeller <moeller at debian.org>
-Build-Depends: debhelper (>= 5.0.0), cdbs, r-base-dev (>= 2.7.0~20080408), r-recommended, r-cran-genetics, r-cran-haplo.stats, r-cran-qvalue
+Uploaders: Steffen Moeller <moeller at debian.org>,
+ Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 7), cdbs, r-base-dev (>= 2.7.0~20080408), r-recommended, r-cran-genetics, r-cran-haplo.stats, r-cran-qvalue
 Standards-Version: 3.9.1
 Homepage: http://mga.bionet.nsc.ru/nlru/GenABEL/
 

Modified: trunk/packages/R/r-other-genabel/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-other-genabel/trunk/debian/rules	2011-02-05 18:16:16 UTC (rev 5909)
+++ trunk/packages/R/r-other-genabel/trunk/debian/rules	2011-02-05 19:48:10 UTC (rev 5910)
@@ -1,7 +1,13 @@
 #!/usr/bin/make -f
 # 							-*- makefile -*-
-# debian/rules file for the Debian/GNU Linux r-cran-qtl package
-# Copyright 2003-2006 by Dirk Eddelbuettel <edd at debian.org>
+# debian/rules file for the Debian/GNU Linux r-cran-genabel package
+# Copyright 2008-2011 by Steffen Moeller <moeller at debian.org>
+#	    2011 by Andreas Tille <tille at debian.org>
 
 debRreposname=cran
 include /usr/share/R/debian/r-cran.mk
+
+install/$(package)::
+	## Require a number equal or superior than the R version the package was built with.
+	# echo "R:Depends=r-base-core (>= $(shell R --version | head -n1 | perl -ne 'print / +([0-9]\.[0-9]+\.[0-9])/')~)" >> debian/$(package).substvars
+	find debian/$(package)/usr/lib/R/site-library/GenABEL/ -type f -exec chmod 644 \{\} \;