[med-svn] r5916 - trunk/packages/figtree/trunk/debian
Andreas Tille
tille at alioth.debian.org
Sun Feb 6 17:01:58 UTC 2011
Author: tille
Date: 2011-02-06 17:01:55 +0000 (Sun, 06 Feb 2011)
New Revision: 5916
Added:
trunk/packages/figtree/trunk/debian/figtree.dirs
trunk/packages/figtree/trunk/debian/figtree.menu
trunk/packages/figtree/trunk/debian/figtree.sh
trunk/packages/figtree/trunk/debian/figtree.xpm
Removed:
trunk/packages/figtree/trunk/debian/figtree-wrapper
Modified:
trunk/packages/figtree/trunk/debian/control
trunk/packages/figtree/trunk/debian/figtree.examples
trunk/packages/figtree/trunk/debian/figtree.install
trunk/packages/figtree/trunk/debian/rules
Log:
Get packaging to a state where you can fire up figtree, tests need to be done, help in testing is more than welcome
Modified: trunk/packages/figtree/trunk/debian/control
===================================================================
--- trunk/packages/figtree/trunk/debian/control 2011-02-05 21:56:51 UTC (rev 5915)
+++ trunk/packages/figtree/trunk/debian/control 2011-02-06 17:01:55 UTC (rev 5916)
@@ -4,7 +4,7 @@
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
DM-Upload-Allowed: yes
Uploaders: Andreas Tille <tille at debian.org>
-Build-Depends: debhelper (>= 7.1), openjdk-6-jdk
+Build-Depends: debhelper (>= 7.1), openjdk-6-jdk, ant
Standards-Version: 3.9.1
Homepage: http://tree.bio.ed.ac.uk/software/figtree/
Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/figtree/trunk
Deleted: trunk/packages/figtree/trunk/debian/figtree-wrapper
===================================================================
--- trunk/packages/figtree/trunk/debian/figtree-wrapper 2011-02-05 21:56:51 UTC (rev 5915)
+++ trunk/packages/figtree/trunk/debian/figtree-wrapper 2011-02-06 17:01:55 UTC (rev 5916)
@@ -1,30 +0,0 @@
-#!/bin/sh
-# Simple wrapper script used to start FigTree in Debian
-set -e
-
-# If OpenJDK 6 is only available headless, do not try it
-if dpkg --get-selections openjdk-6-jre | grep install$ > /dev/null ; then
- JAVA_CMDS="$JAVA_HOME/bin/java /usr/lib/jvm/java-6-openjdk/bin/java /usr/lib/jvm/java-6-sun/bin/java"
-else
- JAVA_CMDS="$JAVA_HOME/bin/java /usr/lib/jvm/java-6-sun/bin/java"
-fi
-
-for jcmd in $JAVA_CMDS; do
- if [ "z$ALTERNATIVE_JDK" = "z`readlink -n -f $jcmd`" ] && [ -z "${JAVACMD}" ]; then
- JAVACMD="$jcmd"
- fi
-done
-
-for jcmd in $JAVA_CMDS; do
- if [ -x "$jcmd" -a -z "${JAVACMD}" ]; then
- JAVACMD="$jcmd"
- fi
-done
-
-if [ "$JAVACMD" ]; then
- echo "Using $JAVACMD to execute FigTree."
- exec $JAVACMD $JAVA_OPTS -jar /usr/share/figtree/figtree.jar "$@"
-else
- echo "No valid JVM found to run FigTree."
- exit 1
-fi
Added: trunk/packages/figtree/trunk/debian/figtree.dirs
===================================================================
--- trunk/packages/figtree/trunk/debian/figtree.dirs (rev 0)
+++ trunk/packages/figtree/trunk/debian/figtree.dirs 2011-02-06 17:01:55 UTC (rev 5916)
@@ -0,0 +1 @@
+usr/bin
Modified: trunk/packages/figtree/trunk/debian/figtree.examples
===================================================================
--- trunk/packages/figtree/trunk/debian/figtree.examples 2011-02-05 21:56:51 UTC (rev 5915)
+++ trunk/packages/figtree/trunk/debian/figtree.examples 2011-02-06 17:01:55 UTC (rev 5916)
@@ -1 +1 @@
-examples
+examples/*
Modified: trunk/packages/figtree/trunk/debian/figtree.install
===================================================================
--- trunk/packages/figtree/trunk/debian/figtree.install 2011-02-05 21:56:51 UTC (rev 5915)
+++ trunk/packages/figtree/trunk/debian/figtree.install 2011-02-06 17:01:55 UTC (rev 5916)
@@ -1 +1,2 @@
dist/*.jar usr/share/figtree
+debian/*.xpm usr/share/pixmaps
Added: trunk/packages/figtree/trunk/debian/figtree.menu
===================================================================
--- trunk/packages/figtree/trunk/debian/figtree.menu (rev 0)
+++ trunk/packages/figtree/trunk/debian/figtree.menu 2011-02-06 17:01:55 UTC (rev 5916)
@@ -0,0 +1,7 @@
+?package(figtree):\
+ needs="x11"\
+ section="Applications/Science/Biology"\
+ title="FigTree"\
+ command="/usr/bin/figtree"\
+ hints="graphical phylogenetic tree viewer"\
+ icon="/usr/share/pixmaps/figtree.xpm"
Added: trunk/packages/figtree/trunk/debian/figtree.sh
===================================================================
--- trunk/packages/figtree/trunk/debian/figtree.sh (rev 0)
+++ trunk/packages/figtree/trunk/debian/figtree.sh 2011-02-06 17:01:55 UTC (rev 5916)
@@ -0,0 +1,4 @@
+#!/bin/sh -e
+# Simple wrapper script used to start FigTree in Debian
+JAVA_OPTS=${JAVA_OPTS:-" -Xms64m -Xmx1024m"}
+exec java $JAVA_OPTS -jar /usr/share/figtree/figtree.jar "$@"
Property changes on: trunk/packages/figtree/trunk/debian/figtree.sh
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/figtree/trunk/debian/figtree.xpm
===================================================================
--- trunk/packages/figtree/trunk/debian/figtree.xpm (rev 0)
+++ trunk/packages/figtree/trunk/debian/figtree.xpm 2011-02-06 17:01:55 UTC (rev 5916)
@@ -0,0 +1,294 @@
+/* XPM */
+static char *figtree[] = {
+/* columns rows colors chars-per-pixel */
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+};
Modified: trunk/packages/figtree/trunk/debian/rules
===================================================================
--- trunk/packages/figtree/trunk/debian/rules 2011-02-05 21:56:51 UTC (rev 5915)
+++ trunk/packages/figtree/trunk/debian/rules 2011-02-06 17:01:55 UTC (rev 5916)
@@ -6,9 +6,15 @@
# Uncomment this to turn on verbose mode.
#export DH_VERBOSE=1
+pkg := $(shell dpkg-parsechangelog | sed -n 's/^Source: //p')
+
%:
dh $@
override_dh_auto_clean:
rm -rf dist
ant clean
+
+override_dh_install:
+ dh_install
+ cp -a debian/$(pkg).sh $(CURDIR)/debian/$(pkg)/usr/bin/$(pkg)
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