[med-svn] r5924 - in trunk/packages/figtree/trunk/debian: . patches
Andreas Tille
tille at alioth.debian.org
Mon Feb 7 21:27:53 UTC 2011
Author: tille
Date: 2011-02-07 21:27:52 +0000 (Mon, 07 Feb 2011)
New Revision: 5924
Added:
trunk/packages/figtree/trunk/debian/figtree.1
trunk/packages/figtree/trunk/debian/figtree.manpages
Modified:
trunk/packages/figtree/trunk/debian/control
trunk/packages/figtree/trunk/debian/get-orig-source
trunk/packages/figtree/trunk/debian/patches/series
Log:
figtree.1 (not finished); kick any line with quaqua in a patch which seems to be sufficient to enable leaving out this Mac-only library.
Modified: trunk/packages/figtree/trunk/debian/control
===================================================================
--- trunk/packages/figtree/trunk/debian/control 2011-02-07 19:15:12 UTC (rev 5923)
+++ trunk/packages/figtree/trunk/debian/control 2011-02-07 21:27:52 UTC (rev 5924)
@@ -4,7 +4,8 @@
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
DM-Upload-Allowed: yes
Uploaders: Andreas Tille <tille at debian.org>
-Build-Depends: debhelper (>= 7.1), openjdk-6-jdk, ant, quilt (>= 0.47)
+Build-Depends: debhelper (>= 7.1), openjdk-6-jdk, ant, quilt (>= 0.47),
+ libfreehep-export-java
Standards-Version: 3.9.1
Homepage: http://tree.bio.ed.ac.uk/software/figtree/
Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/figtree/trunk
Added: trunk/packages/figtree/trunk/debian/figtree.1
===================================================================
--- trunk/packages/figtree/trunk/debian/figtree.1 (rev 0)
+++ trunk/packages/figtree/trunk/debian/figtree.1 2011-02-07 21:27:52 UTC (rev 5924)
@@ -0,0 +1,91 @@
+.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.38.4.
+.TH FIGTREE "1" "February 2011" "figtree " "User Commands"
+.SH NAME
+figtree \- graphical phylogenetic tree viewer
+.SH DESCRIPTION
+Figtree is a (phylogenetic) tree figure drawing tool.
+It is designed as a graphical viewer of phylogenetic trees and as
+a program for producing publication-ready figures. In particular it is
+designed to display summarized and annotated trees produced by BEAST.
+.SH AUTHOR
+Andrew Rambaut
+.P
+Institute of Evolutionary Biology
+.P
+University of Edinburgh
+.P
+a.rambaut at ed.ac.uk
+.P
+http://tree.bio.ed.ac.uk/
+.IP
+Uses the Java Evolutionary Biology Library (JEBL)
+.IP
+http://jebl.sourceforge.net/
+.IP
+Thanks to Alexei Drummond, Joseph Heled, Philippe Lemey,
+.IP
+Tulio de Oliveira, Beth Shapiro & Marc Suchard
+.IP
+Usage: figtree [\-graphic <PDF|SVG|SWF|PS|EMF|GIF>] [\-width <i>] [\-height <i>] [\-help] [<tree\-file\-name>] [<graphic\-file\-name>]
+.HP
+\fB\-graphic\fR produce a graphic with the given format
+.HP
+\fB\-width\fR the width of the graphic in pixels
+.HP
+\fB\-height\fR the height of the graphic in pixels
+.HP
+\fB\-help\fR option to print this message
+.IP
+Example: figtree test.tree
+Example: figtree \fB\-graphic\fR PDF test.tree test.pdf
+Example: figtree \fB\-graphic\fR GIF \fB\-width\fR 320 \fB\-height\fR 320 test.tree test.gif
+.PP
+Unrecognized argument: \fB\-\-version\fR
+.IP
+FigTree v1.3.1, 2006\-2009
+.IP
+Tree Figure Drawing Tool
+.IP
+Andrew Rambaut
+.IP
+Institute of Evolutionary Biology
+.IP
+University of Edinburgh
+.IP
+a.rambaut at ed.ac.uk
+.IP
+http://tree.bio.ed.ac.uk/
+.IP
+Uses the Java Evolutionary Biology Library (JEBL)
+.IP
+http://jebl.sourceforge.net/
+.IP
+Thanks to Alexei Drummond, Joseph Heled, Philippe Lemey,
+.IP
+Tulio de Oliveira, Beth Shapiro & Marc Suchard
+.IP
+Usage: figtree [\-graphic <PDF|SVG|SWF|PS|EMF|GIF>] [\-width <i>] [\-height <i>] [\-help] [<tree\-file\-name>] [<graphic\-file\-name>]
+.HP
+\fB\-graphic\fR produce a graphic with the given format
+.HP
+\fB\-width\fR the width of the graphic in pixels
+.HP
+\fB\-height\fR the height of the graphic in pixels
+.HP
+\fB\-help\fR option to print this message
+.IP
+Example: figtree test.tree
+Example: figtree \fB\-graphic\fR PDF test.tree test.pdf
+Example: figtree \fB\-graphic\fR GIF \fB\-width\fR 320 \fB\-height\fR 320 test.tree test.gif
+.SH "SEE ALSO"
+The full documentation for
+.B figtree
+is maintained as a Texinfo manual. If the
+.B info
+and
+.B figtree
+programs are properly installed at your site, the command
+.IP
+.B info figtree
+.PP
+should give you access to the complete manual.
Added: trunk/packages/figtree/trunk/debian/figtree.manpages
===================================================================
--- trunk/packages/figtree/trunk/debian/figtree.manpages (rev 0)
+++ trunk/packages/figtree/trunk/debian/figtree.manpages 2011-02-07 21:27:52 UTC (rev 5924)
@@ -0,0 +1 @@
+debian/*.1
Modified: trunk/packages/figtree/trunk/debian/get-orig-source
===================================================================
--- trunk/packages/figtree/trunk/debian/get-orig-source 2011-02-07 19:15:12 UTC (rev 5923)
+++ trunk/packages/figtree/trunk/debian/get-orig-source 2011-02-07 21:27:52 UTC (rev 5924)
@@ -37,15 +37,16 @@
rm -rf release/Mac release/Windows
# remove jars which are provided as binaries but are not directly needed to build FigTree
-for jar in lib/jwt/commons-fileupload-1.2.1.jar \
- lib/jwt/commons-io-1.4.jar \
- lib/libquaqua.jnilib \
- lib/jdom.jar \
- lib/swing-layout.jar \
- lib/quaqua-filechooser-only.jar \
- lib/quaqua-colorchooser-only.jar \
+for jar in jwt/commons-fileupload-1.2.1.jar \
+ jwt/commons-io-1.4.jar \
+ libquaqua.jnilib \
+ jdom.jar \
+ swing-layout.jar \
+ quaqua-filechooser-only.jar \
+ quaqua-colorchooser-only.jar \
+ quaqua.jar \
; do
- rm -f $jar
+ rm -f lib/$jar
done
cd ..
Modified: trunk/packages/figtree/trunk/debian/patches/series
===================================================================
--- trunk/packages/figtree/trunk/debian/patches/series 2011-02-07 19:15:12 UTC (rev 5923)
+++ trunk/packages/figtree/trunk/debian/patches/series 2011-02-07 21:27:52 UTC (rev 5924)
@@ -1 +1,2 @@
build_figtree_gui_only.patch
+ignore_quaqua.patch
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