[med-svn] [SCM] bwa branch, experimental-meta, updated. f9bd10f04890bcaae1cc603a4815ab800df81093
Charles Plessy
plessy at debian.org
Tue Feb 8 06:54:53 UTC 2011
The following commit has been merged in the experimental-meta branch:
commit 88672f5f4d03273a007da550dcb759fc2ff9841c
Author: Charles Plessy <plessy at debian.org>
Date: Tue Feb 8 15:45:58 2011 +0900
# Collected more logs for 0.5.9~rc-1.
diff --git a/hurd-i386.log b/hurd-i386.log
new file mode 100644
index 0000000..6cf0a38
--- /dev/null
+++ b/hurd-i386.log
@@ -0,0 +1,334 @@
+From buildd at mozart.debian.net Sat Jan 22 05:29:18 2011
+Return-path: <buildd at mozart.debian.net>
+Received: from callisto.debian.net ([80.87.129.151])
+ by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.69) (envelope-from <buildd at mozart.debian.net>)
+ id 1PgW2H-0004BQ-Ok
+ for logs at buildd.debian.org; Sat, 22 Jan 2011 05:29:18 +0000
+Received: from mozart.debian.net ([10.1.0.1])
+ by callisto.debian.net with esmtp (Exim 4.69)
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+Received: from buildd by mozart.debian.net with local (Exim 4.72)
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+ id 1PgW2G-0006tB-Vp; Sat, 22 Jan 2011 05:29:17 +0000
+Date: Sat, 22 Jan 2011 05:29:16 +0000
+Message-Id: <E1PgW2G-0006tB-Vp at mozart.debian.net>
+From: Build Daemon <buildd at mozart.debian.net>
+To: samuel.thibault at labri.fr, mbanck at gmx.net, logs at debian-ports.org,
+ logs at buildd.debian.org, debian-hurd-build-logs at lists.alioth.debian.org
+Subject: Log for successful build of bwa_0.5.9~rc-1 on hurd-i386
+ (dist=experimental)
+Content-Type: text/plain; charset=UTF-8
+Content-Transfer-Encoding: 8bit
+Delivered-To: logs at buildd.debian.org
+
+sbuild (Debian sbuild) 0.59.1 (31 Jan 2010) on mozart.debian.net
+
+╔══════════════════════════════════════════════════════════════════════════════╗
+║ bwa 0.5.9~rc-1 (hurd-i386) 22 janv. 2011 05:24 ║
+╚══════════════════════════════════════════════════════════════════════════════╝
+
+Package: bwa
+Version: 0.5.9~rc-1
+Architecture: hurd-i386
+Chroot Build Dir: /home/buildd/build/chroot-experimental/build/buildd-bwa_0.5.9~rc-1-hurd-i386-TIJBn8
+Start Time: 20110122-0524
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Fetch source files │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Check APT
+─────────
+
+Checking available source versions...
+
+Download source files with APT
+──────────────────────────────
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+NOTICE: 'bwa' packaging is maintained in the 'Git' version control system at:
+git://git.debian.org/git/debian-med/bwa.git
+Need to get 118 kB of source archives.
+Get:1 http://ftp.uk.debian.org/debian/ experimental/main bwa 0.5.9~rc-1 (dsc) [1915 B]
+Get:2 http://ftp.uk.debian.org/debian/ experimental/main bwa 0.5.9~rc-1 (tar) [113 kB]
+Get:3 http://ftp.uk.debian.org/debian/ experimental/main bwa 0.5.9~rc-1 (diff) [3594 B]
+Fetched 118 kB in 0s (591 kB/s)
+Download complete and in download only mode
+
+Check arch
+──────────
+
+** Using build dependencies supplied by package:
+Build-Depends: cdbs, debhelper (>= 8), zlib1g-dev
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Checking for already installed source dependencies...
+cdbs: missing
+debhelper: already installed (8.0.0 >= 8 is satisfied)
+zlib1g-dev: missing
+Checking for source dependency conflicts...
+Installing positive dependencies: cdbs zlib1g-dev
+debconf: delaying package configuration, since apt-utils is not installed
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following packages were automatically installed and are no longer required:
+ libpopt0 adduser libssl1.0.0
+Use 'apt-get autoremove' to remove them.
+Suggested packages:
+ devscripts doc-base
+Recommended packages:
+ autotools-dev
+The following NEW packages will be installed:
+ cdbs zlib1g-dev
+0 upgraded, 2 newly installed, 0 to remove and 48 not upgraded.
+Need to get 0 B/1460 kB of archives.
+After this operation, 2187 kB of additional disk space will be used.
+Selecting previously deselected package cdbs.
+(Reading database ... 12558 files and directories currently installed.)
+Unpacking cdbs (from .../archives/cdbs_0.4.91_all.deb) ...
+Selecting previously deselected package zlib1g-dev.
+Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.5.dfsg-1_hurd-i386.deb) ...
+Processing triggers for man-db ...
+Setting up cdbs (0.4.91) ...
+Setting up zlib1g-dev (1:1.2.5.dfsg-1) ...
+Removing negative dependencies:
+Checking correctness of source dependencies...
+Kernel: GNU 0.3 hurd-i386 (i686-AT386)
+Toolchain package versions: libc0.3-dev_2.11.2-6+b1 dpkg-dev_1.15.8.5 hurd-dev_20100926-1 gnumach-dev_2:1.3.99.dfsg.git20100732-1 gcc-4.4_4.4.5-7 g++-4.4_4.4.5-7 binutils_2.21-4 libstdc++6-4.4-dev_4.4.5-7 libstdc++6_4.5.2-1
+Package versions: adduser_3.112+nmu1 apt_0.8.8 base-files_5.9 base-passwd_3.5.22 bash_4.1-3 binutils_2.21-4 bsdmainutils_8.0.13 bsdutils_1:2.16.2-0 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.91 coreutils_8.5-1 cpio_2.11-4 cpp_4:4.5.1-1exp1 cpp-4.4_4.4.5-7 cpp-4.5_4.5.2-1 dash_0.5.5.1-7.2 debconf_1.5.36 debconf-english_1.5.36 debfoster_2.6-2 debhelper_8.0.0 debian-archive-keyring_2010.08.28 debianutils_3.4.1 deborphan_1.7.28 dialog_1.1-20100428-1 diffutils_1:3.0-1 dpkg_1.15.8.5 dpkg-dev_1.15.8.5 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.12.4 file_5.03-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-2.1 fontconfig-config_2.8.0-2.1 g++_4:4.4.5-1 g++-4.4_4.4.5-7 gawk_1:3.1.7.dfsg-5 gcc_4:4.4.5-2 gcc-4.4_4.4.5-7 gcc-4.4-base_4.4.5-7 gcc-4.5_4.5.2-1 gcc-4.5-base_4.5.2-1 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnumach_2:1.3.99.dfsg.git20100732-1 gnumach-dev_2:1.3.99.dfsg.git20100732-1 gnupg_1.4.11-1 gpgv_1.4.11-1 grep_2.6.3-3 groff-base_1.21-3 gzip_1.3.12-9 hostname_3.04 html2text_1.3.2a-15 hurd_20100926-1 hurd-dev_20100926-1 initscripts_2.88dsf-12 insserv_1.14.0-2 install-info_4.13a.dfsg.1-6 intltool-debian_0.35.0+20060710.1 libacl1_2.2.47-3 libattr1_1:2.4.44-2 libblkid1_2.16.2-0 libboost-iostreams1.42.0_1.42.0-4 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-6+b1 libc-dev-bin_2.11.2-6+b1 libc0.3_2.11.2-6+b1 libc0.3-dev_2.11.2-6+b1 libc0.3-xen_2.11.2-6+b1 libcloog-ppl0_0.15.9-2 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-9 libdb4.8_4.8.30-2 libdpkg-perl_1.15.8.5 libelfg0_0.8.13-1 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.1 libfreetype6_2.4.2-2.1 libgcc1_1:4.5.2-1 libgcrypt11_1.4.6-4 libgdbm3_1.8.3-9 libglib2.0-0_2.27.91-1 libglib2.0-data_2.24.2-1 libgmp3c2_2:4.3.2+dfsg-1 libgmpxx4ldbl_2:4.3.2+dfsg-1 libgnutls26_2.8.5-2 libgomp1_4.5.2-1 libgpg-error0_1.10-0.2 libldap-2.4-2_2.4.17-1 liblzma2_4.999.9beta+20100810-1 libmagic1_5.03-5+b1 libmpc2_0.8.2-1+b1 libmpfr4_3.0.0-5 libncurses5_5.7+20101128-1 libncursesw5_5.7+20101128-1 libpam-modules_1.1.1-6.1 libpam-runtime_1.1.1-6.1 libpam0g_1.1.1-6.1 libparted0debian1_2.3-3+hurd.1 libpcre3_8.02-1.1 libpng12-0_1.2.44-1 libpopt0_1.16-1 libppl-c2_0.10.2-9 libppl7_0.10.2-9 libpthread-stubs0_0.3-2 libpthread-stubs0-dev_0.3-2 libreadline6_6.1-3 libsasl2-2_2.1.23.dfsg1-5.1 libsasl2-modules_2.1.23.dfsg1-5.1 libslang2_2.1.4-3 libss2_1.41.12-2 libssl0.9.8_0.9.8o-4 libssl1.0.0_1.0.0c-2 libstdc++6_4.5.2-1 libstdc++6-4.4-dev_4.4.5-7 libtasn1-3_2.9-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libuuid1_2.16.2-0 libxml2_2.7.8.dfsg-2 lsb-base_3.2-26 make_3.81-8 man-db_2.5.7-6 mawk_1.3.3-15 ncurses-base_5.7+20100313-4 ncurses-bin_5.7+20101128-1 netbase_4.43 netcat-traditional_1.10-38 passwd_1:4.1.4.2+svn3283-2 patch_2.6-3 perl_5.12.2-2 perl-base_5.12.2-2 perl-modules_5.12.2-2 po-debconf_1.0.16 procps_1:3.2.7-11 psmisc_22.3-1 readline-common_6.1-3 sed_4.2.1-7 sensible-utils_0.0.4 sgml-base_1.26+nmu1 shared-mime-info_0.71-3 sudo_1.7.2p7-1 sysv-rc_2.88dsf-12 sysvinit_2.88dsf-12 sysvinit-utils_2.88dsf-12 tar_1.23-3 ttf-bitstream-vera_1.10-8 ttf-freefont_20090104-7 type-handling_0.2.23 tzdata_2010m-1 ucf_3.0025+nmu1 util-linux_2.16.2-0 xml-core_0.13 xz-utils_4.999.9beta+20100810-1 zlib1g_1:1.2.5.dfsg-1 zlib1g-dev_1:1.2.5.dfsg-1
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Unpack source
+─────────────
+
+dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt
+gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Thu Jan 20 12:57:54 2011 UTC using RSA key ID 2295D502
+gpgv: Can't check signature: public key not found
+dpkg-source: warning: failed to verify signature on ./bwa_0.5.9~rc-1.dsc
+dpkg-source: info: extracting bwa in bwa-0.5.9~rc
+dpkg-source: info: unpacking bwa_0.5.9~rc.orig.tar.bz2
+dpkg-source: info: unpacking bwa_0.5.9~rc-1.debian.tar.gz
+
+Check disc space
+────────────────
+
+
+dpkg-buildpackage
+─────────────────
+
+dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: source package bwa
+dpkg-buildpackage: source version 0.5.9~rc-1
+ dpkg-source --before-build bwa-0.5.9~rc
+dpkg-buildpackage: host architecture hurd-i386
+ /usr/bin/fakeroot debian/rules clean
+test -x debian/rules
+dh_testroot
+rm -f debian/stamp-makefile-build debian/stamp-makefile-install
+/usr/bin/make -C . CFLAGS="-g -O2 -g -O2" CXXFLAGS="-g -O2 -g -O2" CPPFLAGS="" LDFLAGS="" -k clean
+make[1]: Entering directory `/build/buildd-bwa_0.5.9~rc-1-hurd-i386-TIJBn8/bwa-0.5.9~rc'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9~rc-1-hurd-i386-TIJBn8/bwa-0.5.9~rc'
+rm -f gmon.out *.o a.out bwa *~ *.a
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9~rc-1-hurd-i386-TIJBn8/bwa-0.5.9~rc'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9~rc-1-hurd-i386-TIJBn8/bwa-0.5.9~rc/bwt_gen'
+rm -f gmon.out *.o a.out *~ *.a
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9~rc-1-hurd-i386-TIJBn8/bwa-0.5.9~rc/bwt_gen'
+make[1]: Leaving directory `/build/buildd-bwa_0.5.9~rc-1-hurd-i386-TIJBn8/bwa-0.5.9~rc'
+dh_clean
+ debian/rules build
+test -x debian/rules
+mkdir -p "."
+/usr/bin/make -C . CFLAGS="-g -O2 -g -O2" CXXFLAGS="-g -O2 -g -O2" CPPFLAGS="" LDFLAGS=""
+make[1]: Entering directory `/build/buildd-bwa_0.5.9~rc-1-hurd-i386-TIJBn8/bwa-0.5.9~rc'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9~rc-1-hurd-i386-TIJBn8/bwa-0.5.9~rc'
+make[2]: Nothing to be done for `lib'.
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9~rc-1-hurd-i386-TIJBn8/bwa-0.5.9~rc'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9~rc-1-hurd-i386-TIJBn8/bwa-0.5.9~rc/bwt_gen'
+gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwt_gen.c -o bwt_gen.o
+gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD QSufSort.c -o QSufSort.o
+ar -cru libbwtgen.a bwt_gen.o QSufSort.o
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9~rc-1-hurd-i386-TIJBn8/bwa-0.5.9~rc/bwt_gen'
+gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD utils.c -o utils.o
+gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwt.c -o bwt.o
+gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtio.c -o bwtio.o
+gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtaln.c -o bwtaln.o
+gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtgap.c -o bwtgap.o
+gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD is.c -o is.o
+gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bntseq.c -o bntseq.o
+gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtmisc.c -o bwtmisc.o
+gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtindex.c -o bwtindex.o
+gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD stdaln.c -o stdaln.o
+gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD simple_dp.c -o simple_dp.o
+gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwaseqio.c -o bwaseqio.o
+gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwase.c -o bwase.o
+gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwape.c -o bwape.o
+gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD kstring.c -o kstring.o
+gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD cs2nt.c -o cs2nt.o
+gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtsw2_core.c -o bwtsw2_core.o
+gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtsw2_main.c -o bwtsw2_main.o
+gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtsw2_aux.c -o bwtsw2_aux.o
+gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwt_lite.c -o bwt_lite.o
+gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtsw2_chain.c -o bwtsw2_chain.o
+gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bamlite.c -o bamlite.o
+gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD main.c -o main.o
+gcc -g -O2 -g -O2 -DHAVE_PTHREAD utils.o bwt.o bwtio.o bwtaln.o bwtgap.o is.o bntseq.o bwtmisc.o bwtindex.o stdaln.o simple_dp.o bwaseqio.o bwase.o bwape.o kstring.o cs2nt.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o bamlite.o main.o -o bwa -lm -lz -lpthread -Lbwt_gen -lbwtgen
+make[1]: Leaving directory `/build/buildd-bwa_0.5.9~rc-1-hurd-i386-TIJBn8/bwa-0.5.9~rc'
+touch debian/stamp-makefile-build
+ /usr/bin/fakeroot debian/rules binary-arch
+DEB_MAKE_CHECK_TARGET unset, not running checks
+test -x debian/rules
+dh_testroot
+dh_prep
+dh_installdirs -A
+mkdir -p "."
+DEB_MAKE_CHECK_TARGET unset, not running checks
+DEB_MAKE_INSTALL_TARGET unset, skipping default makefile.mk common-install target
+Adding cdbs dependencies to debian/bwa.substvars
+dh_installdirs -pbwa
+dh_installdocs -pbwa ./NEWS
+dh_installexamples -pbwa
+dh_installman -pbwa
+dh_installinfo -pbwa
+dh_installmenu -pbwa
+dh_installcron -pbwa
+dh_installinit -pbwa
+dh_installdebconf -pbwa
+dh_installemacsen -pbwa
+dh_installcatalogs -pbwa
+dh_installpam -pbwa
+dh_installlogrotate -pbwa
+dh_installlogcheck -pbwa
+dh_installchangelogs -pbwa ./ChangeLog
+dh_installudev -pbwa
+dh_lintian -pbwa
+dh_bugfiles -pbwa
+dh_install -pbwa
+dh_link -pbwa
+dh_installmime -pbwa
+dh_strip -pbwa
+dh_compress -pbwa
+dh_fixperms -pbwa
+dh_makeshlibs -pbwa
+dh_installdeb -pbwa
+dh_perl -pbwa
+dh_shlibdeps -pbwa
+dh_gencontrol -pbwa
+dpkg-gencontrol: warning: package bwa: unused substitution variable ${perl:Depends}
+dh_md5sums -pbwa
+dh_builddeb -pbwa
+dpkg-deb: building package `bwa' in `../bwa_0.5.9~rc-1_hurd-i386.deb'.
+ dpkg-genchanges -B -mDebian GNU/Hurd Build Daemon <buildd_hurd-i386-mozart at buildd.debian.org> >../bwa_0.5.9~rc-1_hurd-i386.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
+ dpkg-source --after-build bwa-0.5.9~rc
+dpkg-buildpackage: binary only upload (no source included)
+────────────────────────────────────────────────────────────────────────────────
+Build finished at 20110122-0529
+
+bwa_0.5.9~rc-1_hurd-i386.changes:
+Format: 1.8
+Date: Thu, 20 Jan 2011 21:42:55 +0900
+Source: bwa
+Binary: bwa
+Architecture: hurd-i386
+Version: 0.5.9~rc-1
+Distribution: experimental
+Urgency: low
+Maintainer: Debian GNU/Hurd Build Daemon <buildd_hurd-i386-mozart at buildd.debian.org>
+Changed-By: Charles Plessy <plessy at debian.org>
+Description:
+ bwa - Burrows-Wheeler Aligner
+Changes:
+ bwa (0.5.9~rc-1) experimental; urgency=low
+ .
+ * New usptream release candidate.
+Checksums-Sha1:
+ 21d2c2360382de0299c2837caea0318acf75eee3 137148 bwa_0.5.9~rc-1_hurd-i386.deb
+Checksums-Sha256:
+ 1ca24bcccaef61b9923ab45e2a746b66896f716785ef07c1e32ed02bd1601c55 137148 bwa_0.5.9~rc-1_hurd-i386.deb
+Files:
+ 1200fb3b90fc5b512d0dcee5da683029 137148 science optional bwa_0.5.9~rc-1_hurd-i386.deb
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Package contents │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+bwa_0.5.9~rc-1_hurd-i386.deb
+────────────────────────────
+
+ new debian package, version 2.0.
+ size 137148 bytes: control archive= 953 bytes.
+ 790 bytes, 17 lines control
+ 556 bytes, 9 lines md5sums
+ Package: bwa
+ Version: 0.5.9~rc-1
+ Architecture: hurd-i386
+ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+ Installed-Size: 312
+ Depends: hurd, libc0.3 (>= 2.11), zlib1g (>= 1:1.1.4)
+ Suggests: samtools
+ Section: science
+ Priority: optional
+ Homepage: http://bio-bwa.sourceforge.net/
+ Description: Burrows-Wheeler Aligner
+ Burrows-Wheeler Aligner (BWA) is a program that aligns relatively short
+ nucleotide sequences against a long reference sequence such as the human
+ genome. It implements two algorithms, bwa-short and BWA-SW. The former works
+ for query sequences shorter than 200 bp and the latter for longer sequences up
+ to around 100 kbp. Both algorithms do gapped alignment. They are usually more
+ accurate and faster on queries with low error rates.
+
+drwxr-xr-x root/root 0 2011-01-22 05:28 ./
+drwxr-xr-x root/root 0 2011-01-22 05:28 ./usr/
+drwxr-xr-x root/root 0 2011-01-22 05:28 ./usr/share/
+drwxr-xr-x root/root 0 2011-01-22 05:28 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-01-22 05:28 ./usr/share/doc/bwa/
+-rw-r--r-- root/root 5606 2011-01-20 11:35 ./usr/share/doc/bwa/NEWS.gz
+-rw-r--r-- root/root 2679 2011-01-20 11:52 ./usr/share/doc/bwa/copyright
+-rw-r--r-- root/root 17751 2011-01-20 11:35 ./usr/share/doc/bwa/changelog.gz
+-rw-r--r-- root/root 17751 2011-01-20 11:35 ./usr/share/doc/bwa/ChangeLog.gz
+-rw-r--r-- root/root 805 2011-01-20 12:43 ./usr/share/doc/bwa/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-01-22 05:28 ./usr/share/man/
+drwxr-xr-x root/root 0 2011-01-22 05:28 ./usr/share/man/man1/
+-rw-r--r-- root/root 7423 2011-01-22 05:28 ./usr/share/man/man1/bwa.1.gz
+drwxr-xr-x root/root 0 2011-01-22 05:28 ./usr/share/bwa/
+-rwxr-xr-x root/root 3176 2011-01-20 11:35 ./usr/share/bwa/solid2fastq.pl
+-rwxr-xr-x root/root 616 2011-01-20 11:35 ./usr/share/bwa/qualfa2fq.pl
+drwxr-xr-x root/root 0 2011-01-22 05:28 ./usr/bin/
+-rwxr-xr-x root/root 199536 2011-01-22 05:28 ./usr/bin/bwa
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Finished │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Built successfully
+────────────────────────────────────────────────────────────────────────────────
+Purging /home/buildd/build/chroot-experimental/build/buildd-bwa_0.5.9~rc-1-hurd-i386-TIJBn8
+(Reading database ... 12646 files and directories currently installed.)
+Removing cdbs ...
+Removing zlib1g-dev ...
+Processing triggers for man-db ...
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20110122-0529
+Build needed 00:04:20, 2416k disc space
+
diff --git a/info b/info
index 2f0daad..f6e9ca4 100644
--- a/info
+++ b/info
@@ -7,3 +7,5 @@ sparc~1295529411~experimental~successful
s390~1295531602~experimental~successful
kfreebsd-i386~1295534735~experimental~successful
alpha~1295589267~experimental~successful
+hurd-i386~1295674158~experimental~successful
+mipsel~1295725657~experimental~successful
diff --git a/s390.log b/mipsel.log
similarity index 54%
copy from s390.log
copy to mipsel.log
index 53ced33..550e8fa 100644
--- a/s390.log
+++ b/mipsel.log
@@ -1,90 +1,129 @@
-From buildd at zandonai.debian.org Thu Jan 20 13:53:22 2011
-Return-path: <buildd at zandonai.debian.org>
-Received: from kokkonen.debian.org ([2001:41b8:202:deb:216:35ff:fec4:6340])
- from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=kokkonen.debian.org,
- EMAIL=hostmaster at kokkonen.debian.org (verified)
+From buildd at phrixos.ayous.org Sat Jan 22 19:47:36 2011
+Return-path: <buildd at phrixos.ayous.org>
+Received: from [2001:a60:f006:deb:223:9eff:fe00:f7c] (helo=alius.ayous.org)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.69) (envelope-from <buildd at zandonai.debian.org>)
- id 1Pfuwz-00033a-SW
- for logs at buildd.debian.org; Thu, 20 Jan 2011 13:53:22 +0000
-Received: from zandonai.debian.org ([80.245.147.46])
- from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=zandonai.debian.org,
- EMAIL=hostmaster at zandonai.debian.org (verified)
- by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.69) (envelope-from <buildd at zandonai.debian.org>)
- id 1Pfuwy-0000KR-TZ; Thu, 20 Jan 2011 13:53:21 +0000
-Received: from buildd by zandonai.debian.org with local (Exim 4.69)
- (envelope-from <buildd at zandonai.debian.org>)
- id 1Pfuwx-00043G-KH; Thu, 20 Jan 2011 13:53:19 +0000
-From: buildd on zandonai <buildd at zandonai.debian.org>
-To: phil+buildd at philkern.de,logs at buildd.debian.org
-Subject: Log for successful build of bwa_0.5.9~rc-1 on s390 (dist=experimental)
+ (Exim 4.69) (envelope-from <buildd at phrixos.ayous.org>)
+ id 1PgjQs-0007Ma-Od
+ for logs at buildd.debian.org; Sat, 22 Jan 2011 19:47:36 +0000
+Received: from buildd by phrixos.ayous.org with local (Exim 4.72)
+ (envelope-from <buildd at phrixos.ayous.org>)
+ id 1PgjQp-00060n-N8; Sat, 22 Jan 2011 19:47:31 +0000
+Date: Sat, 22 Jan 2011 19:47:31 +0000
+Message-Id: <E1PgjQp-00060n-N8 at phrixos.ayous.org>
+From: buildd on phrixos <buildd at phrixos.ayous.org>
+To: aba+buildd_phrixos at not.so.argh.org,logs at buildd.debian.org
+Subject: Log for successful build of bwa_0.5.9~rc-1 on mipsel
+ (dist=experimental)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
-Message-Id: <E1Pfuwx-00043G-KH at zandonai.debian.org>
-Date: Thu, 20 Jan 2011 13:53:19 +0000
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.60.0 (23 Feb 2010) on zandonai.debian.org
+sbuild (Debian sbuild) 0.60.0 (23 Feb 2010) on phrixos.ayous.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ bwa 0.5.9~rc-1 (s390) 20 Jan 2011 13:51 ║
+║ bwa 0.5.9~rc-1 (mipsel) 22 Jan 2011 19:41 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: bwa
Version: 0.5.9~rc-1
-Architecture: s390
-Chroot Build Dir: /var/lib/schroot/mount/sid-experimental-s390-sbuild-5e65459d-5a03-4a7c-ac4f-9831b09dea8a/build/buildd-bwa_0.5.9~rc-1-s390-anr5mr
-Start Time: 20110120-1351
-Get:1 http://ftp.de.debian.org unstable Release.gpg [835 B]
-Ign http://ftp.de.debian.org/debian/ unstable/contrib Translation-en
-Ign http://ftp.de.debian.org/debian/ unstable/main Translation-en
-Get:2 http://ftp.de.debian.org experimental Release.gpg [835 B]
-Ign http://ftp.de.debian.org/debian/ experimental/contrib Translation-en
-Ign http://ftp.de.debian.org/debian/ experimental/main Translation-en
-Get:3 http://ftp.de.debian.org unstable Release [104 kB]
-Get:4 http://incoming.debian.org unstable Release.gpg [835 B]
+Architecture: mipsel
+Chroot Build Dir: /var/lib/schroot/mount/sid-experimental-mipsel-sbuild-b2939a4e-0652-4122-8c7d-c7be8c392465/build/buildd-bwa_0.5.9~rc-1-mipsel-LDb3tY
+Start Time: 20110122-1941
+Get:1 http://incoming.debian.org unstable Release.gpg [835 B]
Ign http://incoming.debian.org/debian/ unstable/contrib Translation-en
Ign http://incoming.debian.org/debian/ unstable/main Translation-en
-Get:5 http://ftp.de.debian.org experimental Release [102 kB]
-Get:6 http://incoming.debian.org experimental Release.gpg [835 B]
+Get:2 http://incoming.debian.org experimental Release.gpg [835 B]
Ign http://incoming.debian.org/debian/ experimental/contrib Translation-en
Ign http://incoming.debian.org/debian/ experimental/main Translation-en
-Get:7 http://incoming.debian.org Release.gpg [835 B]
+Get:3 http://mirror.ayous.org unstable Release.gpg [835 B]
+Ign http://mirror.ayous.org/debian/ unstable/contrib Translation-en
+Get:4 http://incoming.debian.org Release.gpg [835 B]
+Ign http://mirror.ayous.org/debian/ unstable/main Translation-en
+Get:5 http://mirror.ayous.org experimental Release.gpg [835 B]
+Ign http://mirror.ayous.org/debian/ experimental/contrib Translation-en
+Ign http://mirror.ayous.org/debian/ experimental/main Translation-en
Ign http://incoming.debian.org/buildd-unstable/ Translation-en
+Get:6 http://mirror.ayous.org unstable Release [104 kB]
+Get:7 http://mirror.ayous.org experimental Release [102 kB]
+Ign http://mirror.ayous.org unstable/main Sources
+Ign http://mirror.ayous.org unstable/contrib Sources
+Ign http://mirror.ayous.org unstable/non-free Sources
+Ign http://mirror.ayous.org unstable/main mipsel Packages
+Ign http://mirror.ayous.org unstable/contrib mipsel Packages
Get:8 http://incoming.debian.org Release.gpg [835 B]
+Ign http://mirror.ayous.org unstable/main Sources
+Ign http://mirror.ayous.org experimental/main Sources
+Ign http://mirror.ayous.org experimental/contrib Sources
+Ign http://mirror.ayous.org experimental/non-free Sources
+Ign http://mirror.ayous.org experimental/main mipsel Packages
+Ign http://mirror.ayous.org experimental/contrib mipsel Packages
+Ign http://mirror.ayous.org unstable/contrib Sources
+Ign http://mirror.ayous.org unstable/non-free Sources
+Ign http://mirror.ayous.org unstable/main mipsel Packages
Ign http://incoming.debian.org/buildd-experimental/ Translation-en
+Ign http://mirror.ayous.org unstable/contrib mipsel Packages
Get:9 http://incoming.debian.org unstable Release [104 kB]
-Get:10 http://ftp.de.debian.org unstable/main Sources [4072 kB]
-Get:11 http://incoming.debian.org experimental Release [102 kB]
+Get:10 http://incoming.debian.org experimental Release [102 kB]
+Get:11 http://mirror.ayous.org unstable/main Sources [5254 kB]
Get:12 http://incoming.debian.org Release [1604 B]
+Ign http://mirror.ayous.org experimental/main Sources
+Ign http://mirror.ayous.org experimental/contrib Sources
+Ign http://mirror.ayous.org experimental/non-free Sources
+Ign http://mirror.ayous.org experimental/main mipsel Packages
+Ign http://mirror.ayous.org experimental/contrib mipsel Packages
Get:13 http://incoming.debian.org Release [1625 B]
-Get:14 http://incoming.debian.org unstable/main Sources [4072 kB]
-Get:15 http://ftp.de.debian.org unstable/contrib Sources [38.6 kB]
-Get:16 http://ftp.de.debian.org unstable/non-free Sources [83.9 kB]
-Get:17 http://ftp.de.debian.org unstable/main s390 Packages [6778 kB]
-Get:18 http://ftp.de.debian.org unstable/contrib s390 Packages [48.0 kB]
-Get:19 http://ftp.de.debian.org experimental/main Sources [393 kB]
-Get:20 http://ftp.de.debian.org experimental/contrib Sources [4450 B]
-Get:21 http://ftp.de.debian.org experimental/non-free Sources [6418 B]
-Get:22 http://ftp.de.debian.org experimental/main s390 Packages [787 kB]
-Get:23 http://ftp.de.debian.org experimental/contrib s390 Packages [5255 B]
-Get:24 http://incoming.debian.org unstable/contrib Sources [38.6 kB]
-Get:25 http://incoming.debian.org unstable/non-free Sources [83.9 kB]
-Get:26 http://incoming.debian.org unstable/main s390 Packages [6778 kB]
-Get:27 http://incoming.debian.org unstable/contrib s390 Packages [48.0 kB]
-Get:28 http://incoming.debian.org experimental/main Sources [393 kB]
-Get:29 http://incoming.debian.org experimental/contrib Sources [4450 B]
-Get:30 http://incoming.debian.org experimental/non-free Sources [6418 B]
-Get:31 http://incoming.debian.org experimental/main s390 Packages [787 kB]
-Get:32 http://incoming.debian.org experimental/contrib s390 Packages [5255 B]
-Get:33 http://incoming.debian.org Sources [11.7 kB]
-Get:34 http://incoming.debian.org Packages [103 kB]
-Get:35 http://incoming.debian.org Sources [9718 B]
-Get:36 http://incoming.debian.org Packages [91.5 kB]
-Fetched 25.1 MB in 23s (1068 kB/s)
+Ign http://incoming.debian.org unstable/main Sources
+Ign http://incoming.debian.org unstable/contrib Sources
+Ign http://incoming.debian.org unstable/non-free Sources
+Ign http://incoming.debian.org unstable/main mipsel Packages
+Ign http://incoming.debian.org unstable/contrib mipsel Packages
+Ign http://incoming.debian.org experimental/main Sources
+Ign http://incoming.debian.org experimental/contrib Sources
+Ign http://incoming.debian.org experimental/non-free Sources
+Ign http://incoming.debian.org experimental/main mipsel Packages
+Ign http://incoming.debian.org experimental/contrib mipsel Packages
+Ign http://incoming.debian.org Sources
+Ign http://incoming.debian.org Packages
+Get:14 http://mirror.ayous.org unstable/contrib Sources [46.1 kB]
+Ign http://incoming.debian.org unstable/main Sources
+Get:15 http://mirror.ayous.org unstable/non-free Sources [100 kB]
+Ign http://incoming.debian.org unstable/contrib Sources
+Ign http://incoming.debian.org unstable/non-free Sources
+Get:16 http://mirror.ayous.org unstable/main mipsel Packages [8898 kB]
+Ign http://incoming.debian.org unstable/main mipsel Packages
+Ign http://incoming.debian.org unstable/contrib mipsel Packages
+Ign http://incoming.debian.org experimental/main Sources
+Ign http://incoming.debian.org experimental/contrib Sources
+Ign http://incoming.debian.org experimental/non-free Sources
+Ign http://incoming.debian.org experimental/main mipsel Packages
+Ign http://incoming.debian.org experimental/contrib mipsel Packages
+Ign http://incoming.debian.org Sources
+Ign http://incoming.debian.org Packages
+Ign http://incoming.debian.org Sources
+Ign http://incoming.debian.org Packages
+Get:17 http://incoming.debian.org unstable/main Sources [5254 kB]
+Get:18 http://incoming.debian.org unstable/contrib Sources [46.1 kB]
+Get:19 http://incoming.debian.org unstable/non-free Sources [100 kB]
+Get:20 http://mirror.ayous.org unstable/contrib mipsel Packages [61.1 kB]
+Get:21 http://incoming.debian.org unstable/main mipsel Packages [8898 kB]
+Get:22 http://mirror.ayous.org experimental/main Sources [499 kB]
+Get:23 http://mirror.ayous.org experimental/contrib Sources [4554 B]
+Get:24 http://mirror.ayous.org experimental/non-free Sources [6509 B]
+Get:25 http://mirror.ayous.org experimental/main mipsel Packages [990 kB]
+Get:26 http://mirror.ayous.org experimental/contrib mipsel Packages [5103 B]
+Get:27 http://incoming.debian.org unstable/contrib mipsel Packages [61.1 kB]
+Get:28 http://incoming.debian.org experimental/main Sources [499 kB]
+Get:29 http://incoming.debian.org experimental/contrib Sources [4554 B]
+Get:30 http://incoming.debian.org experimental/non-free Sources [6509 B]
+Get:31 http://incoming.debian.org experimental/main mipsel Packages [990 kB]
+Get:32 http://incoming.debian.org experimental/contrib mipsel Packages [5103 B]
+Ign http://incoming.debian.org Sources
+Ign http://incoming.debian.org Packages
+Get:33 http://incoming.debian.org Sources [9549 B]
+Get:34 http://incoming.debian.org Packages [177 kB]
+Get:35 http://incoming.debian.org Sources [12.1 kB]
+Get:36 http://incoming.debian.org Packages [177 kB]
+Fetched 32.5 MB in 32s (1013 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -106,10 +145,10 @@ Reading state information...
NOTICE: 'bwa' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/bwa.git
Need to get 118 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-experimental/ bwa 0.5.9~rc-1 (dsc) [1915 B]
-Get:2 http://incoming.debian.org/buildd-experimental/ bwa 0.5.9~rc-1 (tar) [113 kB]
-Get:3 http://incoming.debian.org/buildd-experimental/ bwa 0.5.9~rc-1 (diff) [3594 B]
-Fetched 118 kB in 0s (133 kB/s)
+Get:1 http://mirror.ayous.org/debian/ experimental/main bwa 0.5.9~rc-1 (dsc) [1915 B]
+Get:2 http://mirror.ayous.org/debian/ experimental/main bwa 0.5.9~rc-1 (tar) [113 kB]
+Get:3 http://mirror.ayous.org/debian/ experimental/main bwa 0.5.9~rc-1 (diff) [3594 B]
+Fetched 118 kB in 1s (90.1 kB/s)
Download complete and in download only mode
Check arch
@@ -136,36 +175,36 @@ Recommended packages:
The following NEW packages will be installed:
aptitude libboost-iostreams1.42.0 libcwidget3 libept1 libncursesw5
libsigc++-2.0-0c2a libsqlite3-0 libxapian22
-0 upgraded, 8 newly installed, 0 to remove and 10 not upgraded.
-Need to get 6318 kB of archives.
-After this operation, 17.9 MB of additional disk space will be used.
-Get:1 http://ftp.de.debian.org/debian/ unstable/main libboost-iostreams1.42.0 s390 1.42.0-4 [57.8 kB]
-Get:2 http://ftp.de.debian.org/debian/ unstable/main libncursesw5 s390 5.7+20100313-5 [396 kB]
-Get:3 http://ftp.de.debian.org/debian/ unstable/main libsigc++-2.0-0c2a s390 2.2.4.2-1 [39.9 kB]
-Get:4 http://ftp.de.debian.org/debian/ unstable/main libcwidget3 s390 0.5.16-3 [303 kB]
-Get:5 http://ftp.de.debian.org/debian/ unstable/main libxapian22 s390 1.2.4-1 [1226 kB]
-Get:6 http://ftp.de.debian.org/debian/ unstable/main libept1 s390 1.0.4 [148 kB]
-Get:7 http://ftp.de.debian.org/debian/ unstable/main libsqlite3-0 s390 3.7.4-2 [428 kB]
-Get:8 http://ftp.de.debian.org/debian/ unstable/main aptitude s390 0.6.3-3.2 [3719 kB]
+0 upgraded, 8 newly installed, 0 to remove and 57 not upgraded.
+Need to get 6307 kB of archives.
+After this operation, 20.7 MB of additional disk space will be used.
+Get:1 http://mirror.ayous.org/debian/ unstable/main libboost-iostreams1.42.0 mipsel 1.42.0-4 [55.2 kB]
+Get:2 http://mirror.ayous.org/debian/ unstable/main libncursesw5 mipsel 5.7+20100313-5 [371 kB]
+Get:3 http://mirror.ayous.org/debian/ unstable/main libsigc++-2.0-0c2a mipsel 2.2.4.2-1 [39.2 kB]
+Get:4 http://mirror.ayous.org/debian/ unstable/main libcwidget3 mipsel 0.5.16-3 [270 kB]
+Get:5 http://mirror.ayous.org/debian/ unstable/main libxapian22 mipsel 1.2.4-1 [1158 kB]
+Get:6 http://mirror.ayous.org/debian/ unstable/main libept1 mipsel 1.0.4 [135 kB]
+Get:7 http://mirror.ayous.org/debian/ unstable/main libsqlite3-0 mipsel 3.7.4-2 [423 kB]
+Get:8 http://mirror.ayous.org/debian/ unstable/main aptitude mipsel 0.6.3-3.2 [3856 kB]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 6318 kB in 2s (2900 kB/s)
+Fetched 6307 kB in 1s (5518 kB/s)
Selecting previously deselected package libboost-iostreams1.42.0.
-(Reading database ... 10088 files and directories currently installed.)
-Unpacking libboost-iostreams1.42.0 (from .../libboost-iostreams1.42.0_1.42.0-4_s390.deb) ...
+(Reading database ... 10144 files and directories currently installed.)
+Unpacking libboost-iostreams1.42.0 (from .../libboost-iostreams1.42.0_1.42.0-4_mipsel.deb) ...
Selecting previously deselected package libncursesw5.
-Unpacking libncursesw5 (from .../libncursesw5_5.7+20100313-5_s390.deb) ...
+Unpacking libncursesw5 (from .../libncursesw5_5.7+20100313-5_mipsel.deb) ...
Selecting previously deselected package libsigc++-2.0-0c2a.
-Unpacking libsigc++-2.0-0c2a (from .../libsigc++-2.0-0c2a_2.2.4.2-1_s390.deb) ...
+Unpacking libsigc++-2.0-0c2a (from .../libsigc++-2.0-0c2a_2.2.4.2-1_mipsel.deb) ...
Selecting previously deselected package libcwidget3.
-Unpacking libcwidget3 (from .../libcwidget3_0.5.16-3_s390.deb) ...
+Unpacking libcwidget3 (from .../libcwidget3_0.5.16-3_mipsel.deb) ...
Selecting previously deselected package libxapian22.
-Unpacking libxapian22 (from .../libxapian22_1.2.4-1_s390.deb) ...
+Unpacking libxapian22 (from .../libxapian22_1.2.4-1_mipsel.deb) ...
Selecting previously deselected package libept1.
-Unpacking libept1 (from .../libept1_1.0.4_s390.deb) ...
+Unpacking libept1 (from .../libept1_1.0.4_mipsel.deb) ...
Selecting previously deselected package libsqlite3-0.
-Unpacking libsqlite3-0 (from .../libsqlite3-0_3.7.4-2_s390.deb) ...
+Unpacking libsqlite3-0 (from .../libsqlite3-0_3.7.4-2_mipsel.deb) ...
Selecting previously deselected package aptitude.
-Unpacking aptitude (from .../aptitude_0.6.3-3.2_s390.deb) ...
+Unpacking aptitude (from .../aptitude_0.6.3-3.2_mipsel.deb) ...
Setting up libboost-iostreams1.42.0 (1.42.0-4) ...
Setting up libncursesw5 (5.7+20100313-5) ...
Setting up libsigc++-2.0-0c2a (2.2.4.2-1) ...
@@ -175,9 +214,9 @@ Setting up libept1 (1.0.4) ...
Setting up libsqlite3-0 (3.7.4-2) ...
Setting up aptitude (0.6.3-3.2) ...
update-alternatives: using /usr/bin/aptitude-curses to provide /usr/bin/aptitude (aptitude) in auto mode.
-dpkg-deb: building package `sbuild-build-depends-bwa-dummy' in `/build/buildd-bwa_0.5.9~rc-1-s390-anr5mr/buildd-bwa-s390-33aTnY/sbuild-build-depends-bwa-dummy.deb'.
+dpkg-deb: building package `sbuild-build-depends-bwa-dummy' in `/build/buildd-bwa_0.5.9~rc-1-mipsel-LDb3tY/buildd-bwa-mipsel-P9gaXb/sbuild-build-depends-bwa-dummy.deb'.
Selecting previously deselected package sbuild-build-depends-bwa-dummy.
-(Reading database ... 10296 files and directories currently installed.)
+(Reading database ... 10352 files and directories currently installed.)
Unpacking sbuild-build-depends-bwa-dummy (from .../sbuild-build-depends-bwa-dummy.deb) ...
dpkg: dependency problems prevent configuration of sbuild-build-depends-bwa-dummy:
sbuild-build-depends-bwa-dummy depends on cdbs; however:
@@ -203,66 +242,66 @@ The following NEW packages will be installed:
man-db{a} po-debconf{a} zlib1g-dev{a}
The following partially installed packages will be configured:
sbuild-build-depends-bwa-dummy
-0 packages upgraded, 18 newly installed, 0 to remove and 10 not upgraded.
-Need to get 10.2 MB of archives. After unpacking 28.9 MB will be used.
+0 packages upgraded, 18 newly installed, 0 to remove and 57 not upgraded.
+Need to get 9973 kB of archives. After unpacking 30.3 MB will be used.
Writing extended state information...
-Get:1 http://ftp.de.debian.org/debian/ unstable/main libmagic1 s390 5.04-5 [243 kB]
-Get:2 http://ftp.de.debian.org/debian/ unstable/main file s390 5.04-5 [50.0 kB]
-Get:3 http://ftp.de.debian.org/debian/ unstable/main html2text s390 1.3.2a-15 [101 kB]
-Get:4 http://ftp.de.debian.org/debian/ unstable/main libpcre3 s390 8.02-1.1 [239 kB]
-Get:5 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 s390 2.24.2-1 [1140 kB]
-Get:6 http://ftp.de.debian.org/debian/ unstable/main libxml2 s390 2.7.8.dfsg-2 [873 kB]
-Get:7 http://ftp.de.debian.org/debian/ unstable/main libcroco3 s390 0.6.2-1 [128 kB]
-Get:8 http://ftp.de.debian.org/debian/ unstable/main libunistring0 s390 0.9.3-3 [431 kB]
-Get:9 http://ftp.de.debian.org/debian/ unstable/main gettext-base s390 0.18.1.1-3 [142 kB]
-Get:10 http://ftp.de.debian.org/debian/ unstable/main gettext s390 0.18.1.1-3 [2068 kB]
-Get:11 http://ftp.de.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:12 http://ftp.de.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
-Get:13 http://ftp.de.debian.org/debian/ unstable/main groff-base s390 1.20.1-10 [1112 kB]
-Get:14 http://ftp.de.debian.org/debian/ unstable/main bsdmainutils s390 8.2.1 [208 kB]
-Get:15 http://ftp.de.debian.org/debian/ unstable/main man-db s390 2.5.7-8 [1303 kB]
-Get:16 http://ftp.de.debian.org/debian/ unstable/main debhelper all 8.0.0 [454 kB]
-Get:17 http://ftp.de.debian.org/debian/ unstable/main cdbs all 0.4.89 [1240 kB]
-Get:18 http://ftp.de.debian.org/debian/ unstable/main zlib1g-dev s390 1:1.2.3.4.dfsg-3 [193 kB]
+Get:1 http://mirror.ayous.org/debian/ unstable/main libmagic1 mipsel 5.04-5 [238 kB]
+Get:2 http://mirror.ayous.org/debian/ unstable/main file mipsel 5.04-5 [49.5 kB]
+Get:3 http://mirror.ayous.org/debian/ unstable/main html2text mipsel 1.3.2a-15 [103 kB]
+Get:4 http://mirror.ayous.org/debian/ unstable/main libpcre3 mipsel 8.02-1.1 [233 kB]
+Get:5 http://mirror.ayous.org/debian/ unstable/main libglib2.0-0 mipsel 2.24.2-1 [1039 kB]
+Get:6 http://mirror.ayous.org/debian/ unstable/main libxml2 mipsel 2.7.8.dfsg-2 [833 kB]
+Get:7 http://mirror.ayous.org/debian/ unstable/main libcroco3 mipsel 0.6.2-1 [110 kB]
+Get:8 http://mirror.ayous.org/debian/ unstable/main libunistring0 mipsel 0.9.3-3 [411 kB]
+Get:9 http://mirror.ayous.org/debian/ unstable/main gettext-base mipsel 0.18.1.1-3 [152 kB]
+Get:10 http://mirror.ayous.org/debian/ unstable/main gettext mipsel 0.18.1.1-3 [2023 kB]
+Get:11 http://mirror.ayous.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:12 http://mirror.ayous.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:13 http://mirror.ayous.org/debian/ unstable/main groff-base mipsel 1.20.1-10 [1188 kB]
+Get:14 http://mirror.ayous.org/debian/ unstable/main bsdmainutils mipsel 8.2.1 [207 kB]
+Get:15 http://mirror.ayous.org/debian/ unstable/main man-db mipsel 2.5.7-8 [1248 kB]
+Get:16 http://mirror.ayous.org/debian/ unstable/main debhelper all 8.0.0 [454 kB]
+Get:17 http://mirror.ayous.org/debian/ unstable/main cdbs all 0.4.89 [1240 kB]
+Get:18 http://mirror.ayous.org/debian/ unstable/main zlib1g-dev mipsel 1:1.2.3.4.dfsg-3 [192 kB]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 10.2 MB in 3s (3064 kB/s)
+Fetched 9973 kB in 1s (5268 kB/s)
Selecting previously deselected package libmagic1.
-(Reading database ... 10296 files and directories currently installed.)
-Unpacking libmagic1 (from .../libmagic1_5.04-5_s390.deb) ...
+(Reading database ... 10352 files and directories currently installed.)
+Unpacking libmagic1 (from .../libmagic1_5.04-5_mipsel.deb) ...
Selecting previously deselected package file.
-Unpacking file (from .../archives/file_5.04-5_s390.deb) ...
+Unpacking file (from .../file_5.04-5_mipsel.deb) ...
Selecting previously deselected package html2text.
-Unpacking html2text (from .../html2text_1.3.2a-15_s390.deb) ...
+Unpacking html2text (from .../html2text_1.3.2a-15_mipsel.deb) ...
Selecting previously deselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.02-1.1_s390.deb) ...
+Unpacking libpcre3 (from .../libpcre3_8.02-1.1_mipsel.deb) ...
Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.24.2-1_s390.deb) ...
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.24.2-1_mipsel.deb) ...
Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2_s390.deb) ...
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2_mipsel.deb) ...
Selecting previously deselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-1_s390.deb) ...
+Unpacking libcroco3 (from .../libcroco3_0.6.2-1_mipsel.deb) ...
Selecting previously deselected package libunistring0.
-Unpacking libunistring0 (from .../libunistring0_0.9.3-3_s390.deb) ...
+Unpacking libunistring0 (from .../libunistring0_0.9.3-3_mipsel.deb) ...
Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_s390.deb) ...
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_mipsel.deb) ...
Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-3_s390.deb) ...
+Unpacking gettext (from .../gettext_0.18.1.1-3_mipsel.deb) ...
Selecting previously deselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously deselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
Selecting previously deselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.20.1-10_s390.deb) ...
+Unpacking groff-base (from .../groff-base_1.20.1-10_mipsel.deb) ...
Selecting previously deselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_8.2.1_s390.deb) ...
+Unpacking bsdmainutils (from .../bsdmainutils_8.2.1_mipsel.deb) ...
Selecting previously deselected package man-db.
-Unpacking man-db (from .../man-db_2.5.7-8_s390.deb) ...
+Unpacking man-db (from .../man-db_2.5.7-8_mipsel.deb) ...
Selecting previously deselected package debhelper.
Unpacking debhelper (from .../debhelper_8.0.0_all.deb) ...
Selecting previously deselected package cdbs.
Unpacking cdbs (from .../archives/cdbs_0.4.89_all.deb) ...
Selecting previously deselected package zlib1g-dev.
-Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_s390.deb) ...
+Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_mipsel.deb) ...
Setting up libmagic1 (5.04-5) ...
Setting up file (5.04-5) ...
Setting up html2text (1.3.2a-15) ...
@@ -297,9 +336,9 @@ Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
-Kernel: Linux 2.6.32-bpo.5-s390x s390 (s390x)
-Toolchain package versions: libc6-dev_2.11.2-7 dpkg-dev_1.15.8.8 linux-libc-dev_2.6.32-30 gcc-4.4_4.4.5-10 g++-4.4_4.4.5-10 binutils_2.20.1-15 libstdc++6-4.4-dev_4.4.5-10 libstdc++6_4.4.5-10
-Package versions: apt_0.8.10 aptitude_0.6.3-3.2 base-files_6.0 base-passwd_3.5.22 bash_4.1-3 binutils_2.20.1-15 bsdmainutils_8.2.1 bsdutils_1:2.17.2-6 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.89 coreutils_8.5-1 cpp_4:4.4.5-2 cpp-4.4_4.4.5-10 dash_0.5.5.1-7.4 debconf_1.5.37 debconf-i18n_1.5.37 debfoster_2.7-1.1 debhelper_8.0.0 debian-archive-keyring_2010.08.28 debianutils_3.4.2 diffutils_1:3.0-1 dpkg_1.15.8.8 dpkg-dev_1.15.8.8 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.5-1 file_5.04-5 findutils_4.4.2-1+b1 g++_4:4.4.5-2 g++-4.4_4.4.5-10 gcc_4:4.4.5-2 gcc-4.4_4.4.5-10 gcc-4.4-base_4.4.5-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.10-4 gpgv_1.4.10-4 grep_2.6.3-3 groff-base_1.20.1-10 gzip_1.3.12-9 hostname_3.05 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-6 libboost-iostreams1.42.0_1.42.0-4 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-7 libc-dev-bin_2.11.2-7 libc6_2.11.2-7 libc6-dev_2.11.2-7 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libcwidget3_0.5.16-3 libdb4.7_4.7.25-12 libdb4.8_4.8.30-3 libdpkg-perl_1.15.8.8 libept1_1.0.4 libgc1c2_1:6.8-1.2 libgcc1_1:4.4.5-10 libgdbm3_1.8.3-9 libglib2.0-0_2.24.2-1 libgmp3c2_2:4.3.2+dfsg-1 libgomp1_4.4.5-10 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpfr4_3.0.0-2 libncurses5_5.7+20100313-5 libncursesw5_5.7+20100313-5 libpam-modules_1.1.1-6.1 libpam-runtime_1.1.1-6.1 libpam0g_1.1.1-6.1 libpcre3_8.02-1.1 libreadline6_6.1-3 libselinux1_2.0.96-1 libsepol1_2.0.42-1 libsigc++-2.0-0c2a_2.2.4.2-1 libslang2_2.2.2-4 libsqlite3-0_3.7.4-2 libss2_1.41.12-2 libstdc++6_4.4.5-10 libstdc++6-4.4-dev_4.4.5-10 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-16 libuuid1_2.17.2-6 libxapian22_1.2.4-1 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.32-30 login_1:4.1.4.2+svn3283-2 lsb-base_3.2-26 make_3.81-8 man-db_2.5.7-8 mawk_1.3.3-15 mount_2.17.2-6 ncurses-base_5.7+20100313-5 ncurses-bin_5.7+20100313-5 passwd_1:4.1.4.2+svn3283-2 patch_2.6-3 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 po-debconf_1.0.16+nmu1 readline-common_6.1-3 sbuild-build-depends-bwa-dummy_0.invalid.0 sed_4.2.1-8 sensible-utils_0.0.6 sudo_1.7.4p4-6 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 tzdata_2010o-1 util-linux_2.17.2-6 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Kernel: Linux 2.6.36-rc6-loongson-2f mipsel (mips64)
+Toolchain package versions: libc6-dev_2.11.2-6 dpkg-dev_1.15.8.5 linux-libc-dev_2.6.32-23 gcc-4.4_4.4.5-2 g++-4.4_4.4.5-2 binutils_2.20.1-15 libstdc++6-4.4-dev_4.4.5-2 libstdc++6_4.4.5-2
+Package versions: apt_0.8.6 aptitude_0.6.3-3.2 base-files_5.9 base-passwd_3.5.22 bash_4.1-3 binutils_2.20.1-15 bsdmainutils_8.2.1 bsdutils_1:2.17.2-3.3 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.89 coreutils_8.5-1 cpp_4:4.4.5-1 cpp-4.4_4.4.5-2 dash_0.5.5.1-7 debconf_1.5.36 debconf-i18n_1.5.36 debfoster_2.7-1.1 debhelper_8.0.0 debian-archive-keyring_2010.08.28 debianutils_3.4.1 diffutils_1:3.0-1 dpkg_1.15.8.5 dpkg-dev_1.15.8.5 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.4-1 file_5.04-5 findutils_4.4.2-1 g++_4:4.4.5-1 g++-4.4_4.4.5-2 gcc_4:4.4.5-1 gcc-4.4_4.4.5-2 gcc-4.4-base_4.4.5-2 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.10-4 gpgv_1.4.10-4 grep_2.6.3-3 groff-base_1.20.1-10 gzip_1.3.12-9 hostname_3.04 html2text_1.3.2a-15 initscripts_2.88dsf-12 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-3.3 libboost-iostreams1.42.0_1.42.0-4 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-6 libc-dev-bin_2.11.2-6 libc6_2.11.2-6 libc6-dev_2.11.2-6 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libcwidget3_0.5.16-3 libdb4.7_4.7.25-9 libdb4.8_4.8.30-2 libdpkg-perl_1.15.8.5 libept1_1.0.4 libgc1c2_1:6.8-1.2 libgcc1_1:4.4.5-2 libgdbm3_1.8.3-9 libglib2.0-0_2.24.2-1 libgmp3c2_2:4.3.2+dfsg-1 libgomp1_4.4.5-2 liblocale-gettext-perl_1.05-6 liblzma2_4.999.9beta+20100810-1 libmagic1_5.04-5 libmpfr1ldbl_2.4.2-3 libmpfr4_3.0.0-2 libncurses5_5.7+20100313-4 libncursesw5_5.7+20100313-5 libpam-modules_1.1.1-6 libpam-runtime_1.1.1-6 libpam0g_1.1.1-6 libpcre3_8.02-1.1 libreadline6_6.1-3 libselinux1_2.0.96-1 libsepol1_2.0.41-1 libsigc++-2.0-0c2a_2.2.4.2-1 libslang2_2.2.2-4 libsqlite3-0_3.7.4-2 libss2_1.41.12-2 libstdc++6_4.4.5-2 libstdc++6-4.4-dev_4.4.5-2 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-16 libuuid1_2.17.2-3.3 libxapian22_1.2.4-1 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.32-23 login_1:4.1.4.2+svn3283-2 lsb-base_3.2-26 lzma_4.43-14 make_3.81-8 man-db_2.5.7-8 mawk_1.3.3-15 mount_2.17.2-3.3 ncurses-base_5.7+20100313-4 ncurses-bin_5.7+20100313-4 passwd_1:4.1.4.2+svn3283-2 patch_2.6-3 perl_5.10.1-15 perl-base_5.10.1-15 perl-modules_5.10.1-15 po-debconf_1.0.16+nmu1 readline-common_6.1-3 sbuild-build-depends-bwa-dummy_0.invalid.0 sed_4.2.1-7 sensible-utils_0.0.4 sudo_1.7.4p4-4 sysv-rc_2.88dsf-12 sysvinit_2.88dsf-12 sysvinit-utils_2.88dsf-12 tar_1.23-3 tzdata_2010m-1 util-linux_2.17.2-3.3 xz-utils_4.999.9beta+20100810-1 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -333,34 +372,34 @@ dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package bwa
dpkg-buildpackage: source version 0.5.9~rc-1
dpkg-source --before-build bwa-0.5.9~rc
-dpkg-buildpackage: host architecture s390
+dpkg-buildpackage: host architecture mipsel
/usr/bin/fakeroot debian/rules clean
test -x debian/rules
dh_testroot
rm -f debian/stamp-makefile-build debian/stamp-makefile-install
/usr/bin/make -C . CFLAGS="-g -O2 -g -Wall -O2" CXXFLAGS="-g -O2 -g -Wall -O2" CPPFLAGS="" LDFLAGS="" -k clean
-make[1]: Entering directory `/build/buildd-bwa_0.5.9~rc-1-s390-anr5mr/bwa-0.5.9~rc'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9~rc-1-s390-anr5mr/bwa-0.5.9~rc'
+make[1]: Entering directory `/build/buildd-bwa_0.5.9~rc-1-mipsel-LDb3tY/bwa-0.5.9~rc'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9~rc-1-mipsel-LDb3tY/bwa-0.5.9~rc'
rm -f gmon.out *.o a.out bwa *~ *.a
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9~rc-1-s390-anr5mr/bwa-0.5.9~rc'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9~rc-1-s390-anr5mr/bwa-0.5.9~rc/bwt_gen'
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9~rc-1-mipsel-LDb3tY/bwa-0.5.9~rc'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9~rc-1-mipsel-LDb3tY/bwa-0.5.9~rc/bwt_gen'
rm -f gmon.out *.o a.out *~ *.a
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9~rc-1-s390-anr5mr/bwa-0.5.9~rc/bwt_gen'
-make[1]: Leaving directory `/build/buildd-bwa_0.5.9~rc-1-s390-anr5mr/bwa-0.5.9~rc'
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9~rc-1-mipsel-LDb3tY/bwa-0.5.9~rc/bwt_gen'
+make[1]: Leaving directory `/build/buildd-bwa_0.5.9~rc-1-mipsel-LDb3tY/bwa-0.5.9~rc'
dh_clean
debian/rules build
test -x debian/rules
mkdir -p "."
/usr/bin/make -C . CFLAGS="-g -O2 -g -Wall -O2" CXXFLAGS="-g -O2 -g -Wall -O2" CPPFLAGS="" LDFLAGS=""
-make[1]: Entering directory `/build/buildd-bwa_0.5.9~rc-1-s390-anr5mr/bwa-0.5.9~rc'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9~rc-1-s390-anr5mr/bwa-0.5.9~rc'
+make[1]: Entering directory `/build/buildd-bwa_0.5.9~rc-1-mipsel-LDb3tY/bwa-0.5.9~rc'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9~rc-1-mipsel-LDb3tY/bwa-0.5.9~rc'
make[2]: Nothing to be done for `lib'.
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9~rc-1-s390-anr5mr/bwa-0.5.9~rc'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9~rc-1-s390-anr5mr/bwa-0.5.9~rc/bwt_gen'
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9~rc-1-mipsel-LDb3tY/bwa-0.5.9~rc'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9~rc-1-mipsel-LDb3tY/bwa-0.5.9~rc/bwt_gen'
gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwt_gen.c -o bwt_gen.o
gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD QSufSort.c -o QSufSort.o
ar -cru libbwtgen.a bwt_gen.o QSufSort.o
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9~rc-1-s390-anr5mr/bwa-0.5.9~rc/bwt_gen'
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9~rc-1-mipsel-LDb3tY/bwa-0.5.9~rc/bwt_gen'
gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD utils.c -o utils.o
gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwt.c -o bwt.o
gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtio.c -o bwtio.o
@@ -385,7 +424,7 @@ gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_chain.c -o bwtsw2_chain.o
gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bamlite.c -o bamlite.o
gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD main.c -o main.o
gcc -g -O2 -g -Wall -O2 -DHAVE_PTHREAD utils.o bwt.o bwtio.o bwtaln.o bwtgap.o is.o bntseq.o bwtmisc.o bwtindex.o stdaln.o simple_dp.o bwaseqio.o bwase.o bwape.o kstring.o cs2nt.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o bamlite.o main.o -o bwa -lm -lz -lpthread -Lbwt_gen -lbwtgen
-make[1]: Leaving directory `/build/buildd-bwa_0.5.9~rc-1-s390-anr5mr/bwa-0.5.9~rc'
+make[1]: Leaving directory `/build/buildd-bwa_0.5.9~rc-1-mipsel-LDb3tY/bwa-0.5.9~rc'
touch debian/stamp-makefile-build
DEB_MAKE_CHECK_TARGET unset, not running checks
/usr/bin/fakeroot debian/rules binary-arch
@@ -428,25 +467,25 @@ dh_gencontrol -pbwa
dpkg-gencontrol: warning: package bwa: unused substitution variable ${perl:Depends}
dh_md5sums -pbwa
dh_builddeb -pbwa
-dpkg-deb: building package `bwa' in `../bwa_0.5.9~rc-1_s390.deb'.
- dpkg-genchanges -B -ms390 Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org> >../bwa_0.5.9~rc-1_s390.changes
+dpkg-deb: building package `bwa' in `../bwa_0.5.9~rc-1_mipsel.deb'.
+ dpkg-genchanges -B -mmipsel Build Daemon (phrixos) <buildd_mipsel-phrixos at buildd.debian.org> >../bwa_0.5.9~rc-1_mipsel.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
dpkg-source --after-build bwa-0.5.9~rc
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110120-1353
+Build finished at 20110122-1947
-bwa_0.5.9~rc-1_s390.changes:
+bwa_0.5.9~rc-1_mipsel.changes:
Format: 1.8
Date: Thu, 20 Jan 2011 21:42:55 +0900
Source: bwa
Binary: bwa
-Architecture: s390
+Architecture: mipsel
Version: 0.5.9~rc-1
Distribution: experimental
Urgency: low
-Maintainer: s390 Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org>
+Maintainer: mipsel Build Daemon (phrixos) <buildd_mipsel-phrixos at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
bwa - Burrows-Wheeler Aligner
@@ -455,29 +494,29 @@ Changes:
.
* New usptream release candidate.
Checksums-Sha1:
- 3de1ec080d3dde8ff0b28d5c3690b4ef8b019f63 138350 bwa_0.5.9~rc-1_s390.deb
+ 88044c480fe440a537ad9a0652a41fc4dc21ed14 155470 bwa_0.5.9~rc-1_mipsel.deb
Checksums-Sha256:
- d82e406b2ce8e79df86ce38adff2cfd42790133eaee51767e7e1f9b2d0263ced 138350 bwa_0.5.9~rc-1_s390.deb
+ cd18903169185b8bb92bb4fcecf1dd0b3f8e634b1671b987eaeb9e6bcfa175ee 155470 bwa_0.5.9~rc-1_mipsel.deb
Files:
- 6ecb913862532e14654ef54d16a02aa9 138350 science optional bwa_0.5.9~rc-1_s390.deb
+ 886899d3f92bb94cd89eb206f5703145 155470 science optional bwa_0.5.9~rc-1_mipsel.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-bwa_0.5.9~rc-1_s390.deb
-───────────────────────
+bwa_0.5.9~rc-1_mipsel.deb
+─────────────────────────
new debian package, version 2.0.
- size 138350 bytes: control archive= 943 bytes.
- 776 bytes, 17 lines control
+ size 155470 bytes: control archive= 944 bytes.
+ 778 bytes, 17 lines control
556 bytes, 9 lines md5sums
Package: bwa
Version: 0.5.9~rc-1
- Architecture: s390
+ Architecture: mipsel
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 316
+ Installed-Size: 364
Depends: libc6 (>= 2.7), zlib1g (>= 1:1.1.4)
Suggests: samtools
Section: science
@@ -491,24 +530,24 @@ bwa_0.5.9~rc-1_s390.deb
to around 100 kbp. Both algorithms do gapped alignment. They are usually more
accurate and faster on queries with low error rates.
-drwxr-xr-x root/root 0 2011-01-20 13:53 ./
-drwxr-xr-x root/root 0 2011-01-20 13:53 ./usr/
-drwxr-xr-x root/root 0 2011-01-20 13:53 ./usr/bin/
--rwxr-xr-x root/root 203176 2011-01-20 13:53 ./usr/bin/bwa
-drwxr-xr-x root/root 0 2011-01-20 13:53 ./usr/share/
-drwxr-xr-x root/root 0 2011-01-20 13:53 ./usr/share/bwa/
--rwxr-xr-x root/root 3176 2011-01-20 11:35 ./usr/share/bwa/solid2fastq.pl
+drwxr-xr-x root/root 0 2011-01-22 19:47 ./
+drwxr-xr-x root/root 0 2011-01-22 19:47 ./usr/
+drwxr-xr-x root/root 0 2011-01-22 19:47 ./usr/share/
+drwxr-xr-x root/root 0 2011-01-22 19:47 ./usr/share/bwa/
-rwxr-xr-x root/root 616 2011-01-20 11:35 ./usr/share/bwa/qualfa2fq.pl
-drwxr-xr-x root/root 0 2011-01-20 13:53 ./usr/share/man/
-drwxr-xr-x root/root 0 2011-01-20 13:53 ./usr/share/man/man1/
--rw-r--r-- root/root 7423 2011-01-20 13:53 ./usr/share/man/man1/bwa.1.gz
-drwxr-xr-x root/root 0 2011-01-20 13:53 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-01-20 13:53 ./usr/share/doc/bwa/
+-rwxr-xr-x root/root 3176 2011-01-20 11:35 ./usr/share/bwa/solid2fastq.pl
+drwxr-xr-x root/root 0 2011-01-22 19:47 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-01-22 19:47 ./usr/share/doc/bwa/
+-rw-r--r-- root/root 17751 2011-01-20 11:35 ./usr/share/doc/bwa/changelog.gz
-rw-r--r-- root/root 5606 2011-01-20 11:35 ./usr/share/doc/bwa/NEWS.gz
-rw-r--r-- root/root 17751 2011-01-20 11:35 ./usr/share/doc/bwa/ChangeLog.gz
--rw-r--r-- root/root 17751 2011-01-20 11:35 ./usr/share/doc/bwa/changelog.gz
--rw-r--r-- root/root 805 2011-01-20 12:43 ./usr/share/doc/bwa/changelog.Debian.gz
-rw-r--r-- root/root 2679 2011-01-20 11:52 ./usr/share/doc/bwa/copyright
+-rw-r--r-- root/root 805 2011-01-20 12:43 ./usr/share/doc/bwa/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-01-22 19:47 ./usr/share/man/
+drwxr-xr-x root/root 0 2011-01-22 19:47 ./usr/share/man/man1/
+-rw-r--r-- root/root 7423 2011-01-22 19:47 ./usr/share/man/man1/bwa.1.gz
+drwxr-xr-x root/root 0 2011-01-22 19:47 ./usr/bin/
+-rwxr-xr-x root/root 252144 2011-01-22 19:47 ./usr/bin/bwa
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -517,9 +556,9 @@ drwxr-xr-x root/root 0 2011-01-20 13:53 ./usr/share/doc/bwa/
Built successfully
────────────────────────────────────────────────────────────────────────────────
-Purging /var/lib/schroot/mount/sid-experimental-s390-sbuild-5e65459d-5a03-4a7c-ac4f-9831b09dea8a/build/buildd-bwa_0.5.9~rc-1-s390-anr5mr
+Purging /var/lib/schroot/mount/sid-experimental-mipsel-sbuild-b2939a4e-0652-4122-8c7d-c7be8c392465/build/buildd-bwa_0.5.9~rc-1-mipsel-LDb3tY
Not removing build depends: cloned chroot in use
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110120-1353
-Build needed 00:01:20, 2592k disc space
+Finished at 20110122-1947
+Build needed 00:05:53, 2692k disc space
--
Burrows-Wheeler Aligner
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