[med-svn] r5965 - trunk/packages/clonalframe/trunk/debian

[Andreas Tille]

Author: tille
Date: 2011-02-12 18:51:49 +0000 (Sat, 12 Feb 2011)
New Revision: 5965

Modified:
   trunk/packages/clonalframe/trunk/debian/ClonalFrame.1
Log:
Further formatting of manpage


Modified: trunk/packages/clonalframe/trunk/debian/ClonalFrame.1
===================================================================
--- trunk/packages/clonalframe/trunk/debian/ClonalFrame.1	2011-02-12 18:49:21 UTC (rev 5964)
+++ trunk/packages/clonalframe/trunk/debian/ClonalFrame.1	2011-02-12 18:51:49 UTC (rev 5965)
@@ -61,31 +61,44 @@
 \fB\-t\fR NUM
 Indicate which initial tree to use: 0 for a null tree, 1 for a uniformly chosen coalescent tree and 2 for UPGMA tree (default)
 .TP
-\fB\-w\fR FILE     Use Newick file for initial tree
+\fB\-w\fR FILE
+Use Newick file for initial tree
 .TP
-\fB\-a\fR NUM      Sets the first parameter of the beta prior distribution of nu
+\fB\-a\fR NUM
+Sets the first parameter of the beta prior distribution of nu
 .TP
-\fB\-b\fR NUM      Sets the second parameter of the beta prior distribution of nu
+\fB\-b\fR NUM
+Sets the second parameter of the beta prior distribution of nu
 .TP
-\fB\-U\fR          Use uniform priors for rho, theta and delta
+\fB\-U\fR
+Use uniform priors for rho, theta and delta
 .TP
-\fB\-B\fR          Run in BURST mode
+\fB\-B\fR
+Run in BURST mode
 .TP
-\fB\-C\fR          Run in UPGMA mode with a site\-by\-site boostrap procedure
+\fB\-C\fR
+Run in UPGMA mode with a site\-by\-site boostrap procedure
 .TP
-\fB\-c\fR          Run in UPGMA mode with a fragment\-by\-fragment boostrap procedure
+\fB\-c\fR
+Run in UPGMA mode with a fragment\-by\-fragment boostrap procedure
 .TP
-\fB\-S\fR NUM      Sets the seed for the random number generator to NUM
+\fB\-S\fR NUM
+Sets the seed for the random number generator to NUM
 .TP
-\fB\-E\fR NUM      Sets the rate of exponential growth (default is 0)
+\fB\-E\fR NUM
+Sets the rate of exponential growth (default is 0)
 .TP
-\fB\-I\fR          Ignores first block in the alignment
+\fB\-I\fR
+Ignores first block in the alignment
 .TP
-\fB\-L\fR          Clean\-up the alignment before running ClonalFrame
+\fB\-L\fR
+Clean\-up the alignment before running ClonalFrame
 .TP
-\fB\-l\fR          Minimum distance between two reference sites (default is 50)
+\fB\-l\fR
+Minimum distance between two reference sites (default is 50)
 .TP
-\fB\-v\fR          Verbose mode
+\fB\-v\fR
+Verbose mode
 .SH AUTHOR
 \fBClonalFrame\fP was written by Xavier Didelot.
 .PP