[med-svn] [SCM] pysam branch, master, updated. upstream/0.3.1-17-gbad65a3

[Charles Plessy]

The following commit has been merged in the master branch:
commit 337dd4699977311a674bf337a3d3686077336ed3
Author: Charles Plessy <plessy at debian.org>
Date:   Mon Feb 14 18:57:04 2011 +0900

     # Issue 54 fixed upstream. Removed patch system.

diff --git a/debian/control b/debian/control
index bedfc2e..1181227 100644
--- a/debian/control
+++ b/debian/control
@@ -2,7 +2,7 @@ Source: pysam
 Section: science
 Priority: optional
 Maintainer: Charles Plessy <plessy at debian.org>
-Build-Depends: debhelper (>= 8~), quilt, python-dev, cython, zlib1g-dev
+Build-Depends: debhelper (>= 8~), python-dev, cython, zlib1g-dev
 Standards-Version: 3.9.1
 Homepage: http://code.google.com/p/pysam/
 Vcs-Git: git://git.debian.org/debian-med/pysam.git
diff --git a/debian/patches/issue-54 b/debian/patches/issue-54
deleted file mode 100644
index 81b16ff..0000000
--- a/debian/patches/issue-54
+++ /dev/null
@@ -1,13 +0,0 @@
-diff --git a/pysam/csamtools.pyx b/pysam/csamtools.pyx
-index e94e0e6..39e136b 100644
---- a/pysam/csamtools.pyx
-+++ b/pysam/csamtools.pyx
-@@ -1599,7 +1599,7 @@ cdef class AlignedRead:
-                 for pytag, value in tags:
-                     t = type(value)
-                     if t == types.FloatType:
--                        fmt = "<cccf"
-+                        fmt, pytype = "<cccf", 'f'
-                     elif t == types.IntType:
-                         if value < 0:
-                             if value >= -127: fmt, pytype = "<cccb", 'c'
diff --git a/debian/patches/series b/debian/patches/series
deleted file mode 100644
index 9bc2b4c..0000000
--- a/debian/patches/series
+++ /dev/null
@@ -1 +0,0 @@
-issue-54
diff --git a/debian/rules b/debian/rules
index baadecc..2d33f6a 100755
--- a/debian/rules
+++ b/debian/rules
@@ -1,4 +1,4 @@
 #!/usr/bin/make -f
 
 %:
-	dh $@ --with-quilt 
+	dh $@

-- 
interface for the SAM/BAM sequence alignment and mapping format