[med-svn] r5997 - trunk/packages/vienna-rna/trunk/debian

[Alexandre Mestiashvili]

Author: malex-guest
Date: 2011-02-16 10:13:54 +0000 (Wed, 16 Feb 2011)
New Revision: 5997

Added:
   trunk/packages/vienna-rna/trunk/debian/b2ct.1
   trunk/packages/vienna-rna/trunk/debian/ct2b.1
   trunk/packages/vienna-rna/trunk/debian/dpzoom.1
   trunk/packages/vienna-rna/trunk/debian/popt.1
Log:
added missing manual pages , as source used project's webpage & source .


Added: trunk/packages/vienna-rna/trunk/debian/b2ct.1
===================================================================
--- trunk/packages/vienna-rna/trunk/debian/b2ct.1	                        (rev 0)
+++ trunk/packages/vienna-rna/trunk/debian/b2ct.1	2011-02-16 10:13:54 UTC (rev 5997)
@@ -0,0 +1,25 @@
+.TH B2CT "1"               User Contributed Perl Documentation
+
+.SH NAME
+b2ct \- converts the bracket notation produced by RNAfold into an '.ct' file
+
+.SH SYNOPSIS
+b2ct < structure_file > ct_file.ct
+
+.SH DESCRIPTION
+This program converts the bracket notation for RNA secondary structures
+produced by RNAfold to .ct files used by Michael Zukers Program.
+
+In conection with RNAfold it can be used as
+    RNAfold < sequence_file | b2ct > ct_file.ct
+
+.SH SEE ALSO
+
+RNAFOld(1)
+
+.SH AUTHOR
+       Ivo L. Hofacker <ivo at tbi.univie.ac.at>
+
+
+
+perl v5.10.1                      2011-02-01

Added: trunk/packages/vienna-rna/trunk/debian/ct2b.1
===================================================================
--- trunk/packages/vienna-rna/trunk/debian/ct2b.1	                        (rev 0)
+++ trunk/packages/vienna-rna/trunk/debian/ct2b.1	2011-02-16 10:13:54 UTC (rev 5997)
@@ -0,0 +1,23 @@
+.TH CT2B "1"               User Contributed Perl Documentation
+
+.SH NAME
+ct2b \- converts '.ct' files to '.struct' files.
+
+.SH SYNOPSIS
+ct2b  foo.ct > foo.struct
+
+.SH DESCRIPTION
+This program produces dot bracket notation of an RNA secondary 
+structure from Michael Zuker's '.ct' file.
+
+.SH SEE ALSO
+
+RNAFOld(1), b2ct(1)
+
+.SH AUTHOR
+       Ivo L. Hofacker <ivo at tbi.univie.ac.at>
+
+
+
+perl v5.10.1                      2011-02-01
+

Added: trunk/packages/vienna-rna/trunk/debian/dpzoom.1
===================================================================
--- trunk/packages/vienna-rna/trunk/debian/dpzoom.1	                        (rev 0)
+++ trunk/packages/vienna-rna/trunk/debian/dpzoom.1	2011-02-16 10:13:54 UTC (rev 5997)
@@ -0,0 +1,22 @@
+.TH DPZOOM "1"               User Contributed Perl Documentation
+
+.SH NAME
+dpzoom \- zoom into a PostScript dot plot produced by RNAfold or RNAalifold 
+
+.SH SYNOPSIS
+dpzoom [-f first] [-l last] [dp_file]
+
+.SH DESCRIPTION
+Reads a postscript dot plot as produced by RNAfold -p, and extracts the dot plot 
+for a smaller subsequence. 
+
+.SH SEE ALSO
+
+RNAFOld(1), RNAalifold(1)
+
+.SH AUTHOR
+       Ivo L. Hofacker <ivo at tbi.univie.ac.at>
+
+
+
+perl v5.10.1                      2011-02-01

Added: trunk/packages/vienna-rna/trunk/debian/popt.1
===================================================================
--- trunk/packages/vienna-rna/trunk/debian/popt.1	                        (rev 0)
+++ trunk/packages/vienna-rna/trunk/debian/popt.1	2011-02-16 10:13:54 UTC (rev 5997)
@@ -0,0 +1,27 @@
+.TH POPT "1"               User Contributed Perl Documentation
+
+.SH NAME
+popt \- extract Michael Zuker's p-optimal folds from subopt output.
+
+.SH SYNOPSIS
+RNAsubopt -s < seq | popt
+
+.SH DESCRIPTION
+This program extracts Michael Zuker's p-optimal folds from subopt output.
+prints p-optimal structures followed by the list of pairs
+with respect to which they are optimal.
+Input must be sorted by energy!
+
+In conection with RNAfold it can be used as
+    RNAfold < sequence_file | b2ct > ct_file.ct
+
+.SH SEE ALSO
+
+RNAsubopt(1)
+
+.SH AUTHOR
+       Ivo L. Hofacker <ivo at tbi.univie.ac.at>, Walter Fontana
+
+
+
+perl v5.10.1                      2011-02-01