[med-svn] r6121 - trunk/packages/denoiser/trunk/debian

[Andreas Tille]

Author: tille
Date: 2011-02-28 18:32:09 +0000 (Mon, 28 Feb 2011)
New Revision: 6121

Added:
   trunk/packages/denoiser/trunk/debian/denoiser
   trunk/packages/denoiser/trunk/debian/pyversions
Modified:
   trunk/packages/denoiser/trunk/debian/control
   trunk/packages/denoiser/trunk/debian/install
Log:
Add wrapper script, deems to depend from python-cogent which moves the package to contrib :-(


Modified: trunk/packages/denoiser/trunk/debian/control
===================================================================
--- trunk/packages/denoiser/trunk/debian/control	2011-02-28 17:19:52 UTC (rev 6120)
+++ trunk/packages/denoiser/trunk/debian/control	2011-02-28 18:32:09 UTC (rev 6121)
@@ -1,11 +1,11 @@
 Source: denoiser
-Section: science
+Section: contrib/science
 Priority: extra
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Sri Girish Srinivasa Murthy <srigirish at evolbio.mpg.de>,
  Steffen Moeller <moeller at debian.org>,
  Andreas Tille <tille at debian.org>
-Build-Depends: debhelper (>= 7.1), quilt (>= 0.47), python, ghc6
+Build-Depends: debhelper (>= 7.1), quilt (>= 0.47), python-support, python, ghc6
 Standards-Version: 3.9.1
 Homepage: http://www.microbio.me/denoiser/
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/denoiser/trunk/?rev=0&sc=0
@@ -13,7 +13,7 @@
 
 Package: denoiser
 Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}
+Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}, python-cogent
 Description: Rapid denoising of pyrosequencing amplicon data 
  To denoise pyrosequencing amplicon data, the package exploits the
  rank-abundance distribution.  PyroNoise uses an expectation maximization

Added: trunk/packages/denoiser/trunk/debian/denoiser
===================================================================
--- trunk/packages/denoiser/trunk/debian/denoiser	                        (rev 0)
+++ trunk/packages/denoiser/trunk/debian/denoiser	2011-02-28 18:32:09 UTC (rev 6121)
@@ -0,0 +1,9 @@
+#!/bin/bash
+
+# for debugging this script
+# set -x
+
+OPTIONS=$@
+
+export PYTHONPATH="${PYTHONPATH:+$PYTHONPATH:}/usr/share/denoiser/"
+python -m Denoiser.denoiser ${OPTIONS}

Modified: trunk/packages/denoiser/trunk/debian/install
===================================================================
--- trunk/packages/denoiser/trunk/debian/install	2011-02-28 17:19:52 UTC (rev 6120)
+++ trunk/packages/denoiser/trunk/debian/install	2011-02-28 18:32:09 UTC (rev 6121)
@@ -1,3 +1,4 @@
 FlowgramAlignment/FlowgramAli_4frame	usr/lib/denoiser/bin
 Data					usr/share/denoiser
 Denoiser				usr/share/denoiser
+debian/denoiser				usr/bin

Added: trunk/packages/denoiser/trunk/debian/pyversions
===================================================================
--- trunk/packages/denoiser/trunk/debian/pyversions	                        (rev 0)
+++ trunk/packages/denoiser/trunk/debian/pyversions	2011-02-28 18:32:09 UTC (rev 6121)
@@ -0,0 +1 @@
+2.4-