[med-svn] r5770 - trunk/packages/vienna-rna/trunk/debian/patches
Alexandre Mestiashvili
malex-guest at alioth.debian.org
Sat Jan 29 20:51:48 UTC 2011
Author: malex-guest
Date: 2011-01-29 20:51:48 +0000 (Sat, 29 Jan 2011)
New Revision: 5770
Removed:
trunk/packages/vienna-rna/trunk/debian/patches/fix-manual-pages.patch
trunk/packages/vienna-rna/trunk/debian/patches/readseq-exclude.patch
Modified:
trunk/packages/vienna-rna/trunk/debian/patches/series
Log:
cleanup
Deleted: trunk/packages/vienna-rna/trunk/debian/patches/fix-manual-pages.patch
===================================================================
--- trunk/packages/vienna-rna/trunk/debian/patches/fix-manual-pages.patch 2011-01-29 20:48:07 UTC (rev 5769)
+++ trunk/packages/vienna-rna/trunk/debian/patches/fix-manual-pages.patch 2011-01-29 20:51:48 UTC (rev 5770)
@@ -1,206 +0,0 @@
-fixing manual pages
-Index: viennarna-1.8.4/man/RNALfold.1.in
-===================================================================
---- viennarna-1.8.4.orig/man/RNALfold.1.in 2011-01-29 18:32:19.000000000 +0100
-+++ viennarna-1.8.4/man/RNALfold.1.in 2011-01-29 18:32:45.000000000 +0100
-@@ -1,5 +1,5 @@
- .\" .ER
--.TH "RNALFOLD" "l" "1.5" "Ivo Hofacker" "ViennaRNA"
-+.TH "RNALFOLD" "1" "1.5" "Ivo Hofacker" "ViennaRNA"
- .SH "NAME"
- RNALfold \- calculate locally stable secondary structures of RNAs
- .SH "SYNOPSIS"
-Index: viennarna-1.8.4/man/RNAaliduplex.1.in
-===================================================================
---- viennarna-1.8.4.orig/man/RNAaliduplex.1.in 2011-01-29 18:32:19.000000000 +0100
-+++ viennarna-1.8.4/man/RNAaliduplex.1.in 2011-01-29 18:32:45.000000000 +0100
-@@ -1,4 +1,4 @@
--.TH "RNAaliduplex" "l" "0.0.1" "Ivo Hofacker" "Vienna RNA"
-+.TH "RNAaliduplex" "1" "0.0.1" "Ivo Hofacker" "Vienna RNA"
- .SH "NAME"
- .LP
- RNAaliduplex \- Predict conserved RNA-RNA interactions between two alignments
-Index: viennarna-1.8.4/man/RNAalifold.1.in
-===================================================================
---- viennarna-1.8.4.orig/man/RNAalifold.1.in 2011-01-29 18:32:19.000000000 +0100
-+++ viennarna-1.8.4/man/RNAalifold.1.in 2011-01-29 18:32:45.000000000 +0100
-@@ -1,6 +1,6 @@
- .\" -*-nroff-*-
- .\" .ER
--.TH "RNAalifold" "l" "1.8" "Ivo Hofacker" "ViennaRNA"
-+.TH "RNAalifold" "1" "1.8" "Ivo Hofacker" "ViennaRNA"
- .SH "NAME"
- RNAalifold \- calculate secondary structures for a set of aligned RNAs
- .SH "SYNOPSIS"
-Index: viennarna-1.8.4/man/RNAcofold.1.in
-===================================================================
---- viennarna-1.8.4.orig/man/RNAcofold.1.in 2011-01-29 18:32:19.000000000 +0100
-+++ viennarna-1.8.4/man/RNAcofold.1.in 2011-01-29 18:32:45.000000000 +0100
-@@ -1,5 +1,5 @@
- .\" .ER
--.TH "RNACOFOLD" "l" "1.6" "Ivo Hofacker" "ViennaRNA"
-+.TH "RNACOFOLD" "1" "1.6" "Ivo Hofacker" "ViennaRNA"
- .SH "NAME"
- RNAcofold \- calculate secondary structures of two RNAs with dimerization
- .SH "SYNOPSIS"
-Index: viennarna-1.8.4/man/RNAdistance.1.in
-===================================================================
---- viennarna-1.8.4.orig/man/RNAdistance.1.in 2011-01-29 18:32:19.000000000 +0100
-+++ viennarna-1.8.4/man/RNAdistance.1.in 2011-01-29 18:32:45.000000000 +0100
-@@ -1,5 +1,5 @@
- .\" .ER
--.TH "RNADISTANCE" "l" "" "Ivo Hofacker" "Vienna RNA"
-+.TH "RNADISTANCE" "1" "" "Ivo Hofacker" "Vienna RNA"
- .SH "NAME"
- RNAdistance \- calculate distances between RNA secondary structures
- .SH "SYNOPSIS"
-Index: viennarna-1.8.4/man/RNAduplex.1.in
-===================================================================
---- viennarna-1.8.4.orig/man/RNAduplex.1.in 2011-01-29 18:32:19.000000000 +0100
-+++ viennarna-1.8.4/man/RNAduplex.1.in 2011-01-29 18:32:45.000000000 +0100
-@@ -1,4 +1,4 @@
--.TH "RNAduplex" "l" "0.0.1" "Ivo Hofacker" "Vienna RNA"
-+.TH "RNAduplex" "1" "0.0.1" "Ivo Hofacker" "Vienna RNA"
- .SH "NAME"
- .LP
- RNAduplex \- Compute the structure upon hybridization of two RNA strands
-Index: viennarna-1.8.4/man/RNAeval.1.in
-===================================================================
---- viennarna-1.8.4.orig/man/RNAeval.1.in 2011-01-29 18:32:19.000000000 +0100
-+++ viennarna-1.8.4/man/RNAeval.1.in 2011-01-29 18:32:45.000000000 +0100
-@@ -1,5 +1,5 @@
- .\" .ER
--.TH "RNAEVAL" "l" "" "Ivo Hofacker" "Vienna RNA"
-+.TH "RNAEVAL" "1" "" "Ivo Hofacker" "Vienna RNA"
- .SH "NAME"
- RNAEVAL \- calculate energy of RNA sequences on given secondary structure
- .SH "SYNOPSIS"
-Index: viennarna-1.8.4/man/RNAfold.1.in
-===================================================================
---- viennarna-1.8.4.orig/man/RNAfold.1.in 2011-01-29 18:32:19.000000000 +0100
-+++ viennarna-1.8.4/man/RNAfold.1.in 2011-01-29 18:36:40.000000000 +0100
-@@ -1,6 +1,6 @@
- .\" -*-nroff-*-
- .\" .ER
--.TH "RNAFOLD" "l" "1.6" "Ivo Hofacker" "ViennaRNA"
-+.TH "RNAFOLD" "1" "1.6" "Ivo Hofacker" "ViennaRNA"
- .SH "NAME"
- RNAfold \- calculate secondary structures of RNAs
- .SH "SYNOPSIS"
-@@ -89,7 +89,7 @@
- Calculate structures subject to constraints.
- The program reads first the sequence, then a string containing constraints
- on the structure encoded with the symbols:
--. (no constraint for this base)
-+\. (no constraint for this base)
- | (the corresponding base has to be paired
- x (the base is unpaired)
- < (base i is paired with a base j>i)
-Index: viennarna-1.8.4/man/RNAheat.1.in
-===================================================================
---- viennarna-1.8.4.orig/man/RNAheat.1.in 2011-01-29 18:32:19.000000000 +0100
-+++ viennarna-1.8.4/man/RNAheat.1.in 2011-01-29 18:32:45.000000000 +0100
-@@ -1,5 +1,5 @@
- .\" .ER
--.TH "RNAHEAT" "l" "" "Ivo Hofacker" "Vienna RNA"
-+.TH "RNAHEAT" "1" "" "Ivo Hofacker" "Vienna RNA"
- .SH "NAME"
- RNAheat \- calculate specific heat of RNAs
- .SH "SYNOPSIS"
-Index: viennarna-1.8.4/man/RNAinverse.1.in
-===================================================================
---- viennarna-1.8.4.orig/man/RNAinverse.1.in 2011-01-29 18:32:19.000000000 +0100
-+++ viennarna-1.8.4/man/RNAinverse.1.in 2011-01-29 18:32:45.000000000 +0100
-@@ -1,5 +1,5 @@
- .\" .ER
--.TH "RNAINVERSE" "l" "" "Ivo Hofacker" "Vienna RNA"
-+.TH "RNAINVERSE" "1" "" "Ivo Hofacker" "Vienna RNA"
- .SH "NAME"
- RNAINVERSE \- find RNA sequences with given secondary structure
- .SH "SYNOPSIS"
-Index: viennarna-1.8.4/man/RNApaln.1.in
-===================================================================
---- viennarna-1.8.4.orig/man/RNApaln.1.in 2011-01-29 18:32:19.000000000 +0100
-+++ viennarna-1.8.4/man/RNApaln.1.in 2011-01-29 18:32:45.000000000 +0100
-@@ -1,5 +1,5 @@
- .\" .ER
--.TH "RNAPDIST" "l" "" "Ivo Hofacker" "Vienna RNA"
-+.TH "RNAPDIST" "1" "" "Ivo Hofacker" "Vienna RNA"
- .SH "NAME"
- RNApaln \- RNA alignment based on sequence base pairing propensities
- .SH "SYNOPSIS"
-Index: viennarna-1.8.4/man/RNApdist.1.in
-===================================================================
---- viennarna-1.8.4.orig/man/RNApdist.1.in 2011-01-29 18:32:19.000000000 +0100
-+++ viennarna-1.8.4/man/RNApdist.1.in 2011-01-29 18:32:45.000000000 +0100
-@@ -1,5 +1,5 @@
- .\" .ER
--.TH "RNAPDIST" "l" "" "Ivo Hofacker" "Vienna RNA"
-+.TH "RNAPDIST" "1" "" "Ivo Hofacker" "Vienna RNA"
- .SH "NAME"
- RNApdist \- calculate distances between thermodynamic RNA secondary
- structures ensembles
-Index: viennarna-1.8.4/man/RNAplfold.1.in
-===================================================================
---- viennarna-1.8.4.orig/man/RNAplfold.1.in 2011-01-29 18:32:19.000000000 +0100
-+++ viennarna-1.8.4/man/RNAplfold.1.in 2011-01-29 18:32:45.000000000 +0100
-@@ -1,5 +1,5 @@
- .\" .ER
--.TH "RNAPLFOLD" "l" "1.8" "Stephan Bernhart" "ViennaRNA"
-+.TH "RNAPLFOLD" "1" "1.8" "Stephan Bernhart" "ViennaRNA"
- .SH "NAME"
- RNAplfold \- calculate locally stable secondary structure - pair probabilities
- .SH "SYNOPSIS"
-Index: viennarna-1.8.4/man/RNAplot.1.in
-===================================================================
---- viennarna-1.8.4.orig/man/RNAplot.1.in 2011-01-29 18:32:19.000000000 +0100
-+++ viennarna-1.8.4/man/RNAplot.1.in 2011-01-29 18:32:45.000000000 +0100
-@@ -1,5 +1,5 @@
- .\" .ER
--.TH "RNAPLOT" "l" "" "Ivo Hofacker" "Vienna RNA"
-+.TH "RNAPLOT" "1" "" "Ivo Hofacker" "Vienna RNA"
- .SH "NAME"
- RNAplot \- Draw RNA Secondary Structures
- .SH "SYNOPSIS"
-Index: viennarna-1.8.4/man/RNAsubopt.1.in
-===================================================================
---- viennarna-1.8.4.orig/man/RNAsubopt.1.in 2011-01-29 18:32:19.000000000 +0100
-+++ viennarna-1.8.4/man/RNAsubopt.1.in 2011-01-29 18:32:45.000000000 +0100
-@@ -1,6 +1,6 @@
- \" -*-nroff-*-
- .\" .ER
--.TH "RNASUBOPT" "l" "" "Ivo Hofacker" "Vienna RNA"
-+.TH "RNASUBOPT" "1" "" "Ivo Hofacker" "Vienna RNA"
- .SH "NAME"
- RNAsubopt \- calculate suboptimal secondary structures of RNAs
- .SH "SYNOPSIS"
-Index: viennarna-1.8.4/man/RNAup.1.in
-===================================================================
---- viennarna-1.8.4.orig/man/RNAup.1.in 2011-01-29 18:32:19.000000000 +0100
-+++ viennarna-1.8.4/man/RNAup.1.in 2011-01-29 18:36:28.000000000 +0100
-@@ -1,5 +1,5 @@
- .\" .ER
--.TH "RNAUP" "l" "1.6" "Ivo Hofacker" "ViennaRNA"
-+.TH "RNAUP" "1" "1.6" "Ivo Hofacker" "ViennaRNA"
- .SH "NAME"
- RNAup \- calculates the thermodynamics of RNA-RNA interactions
- .SH "SYNOPSIS"
-@@ -137,7 +137,7 @@
- largest contribution to dG[i,j] = sum_kl dG[i,j;k,l] which is given in the
- output file: therefore dG[i,j;k,l] <= dG[i,j].
-
--'....,....1....,....2....,....3....,....4....,....5....,....6....,....7....,....8'
-+\'....,....1....,....2....,....3....,....4....,....5....,....6....,....7....,....8'
- .br
- > franz
- .br
-Index: viennarna-1.8.4/RNAforester/man/RNAforester.1
-===================================================================
---- viennarna-1.8.4.orig/RNAforester/man/RNAforester.1 2011-01-29 18:35:07.000000000 +0100
-+++ viennarna-1.8.4/RNAforester/man/RNAforester.1 2011-01-29 18:35:37.000000000 +0100
-@@ -1,4 +1,4 @@
--.TH RNAForester 1.4 "June 2004"
-+.TH "RNAForester" "1" "1.4" "June 2004"
- .SH NAME
- RNAforester \- compare RNA secondary structures via forest alignment
- .SH SYNOPSIS
Deleted: trunk/packages/vienna-rna/trunk/debian/patches/readseq-exclude.patch
===================================================================
--- trunk/packages/vienna-rna/trunk/debian/patches/readseq-exclude.patch 2011-01-29 20:48:07 UTC (rev 5769)
+++ trunk/packages/vienna-rna/trunk/debian/patches/readseq-exclude.patch 2011-01-29 20:51:48 UTC (rev 5770)
@@ -1,191 +0,0 @@
-Readseq is a different packages which a standalone package. So we don't need to build it as a part of vienna-rna.
-Index: viennarna-1.8.4/Makefile.in
-===================================================================
---- viennarna-1.8.4.orig/Makefile.in 2009-10-13 13:44:34.000000000 +0200
-+++ viennarna-1.8.4/Makefile.in 2011-01-29 19:56:32.000000000 +0100
-@@ -234,7 +234,7 @@
-
- #DIST_SUBDIRS = lib Progs man Utils AliFold H Perl Cluster
- pkgdata_DATA = vienna13.par default.par
--EXTRA_DIST = $(pkgdata_DATA) INSTALL.configure Readseq
-+EXTRA_DIST = $(pkgdata_DATA) INSTALL.configure
- all: config.h
- $(MAKE) $(AM_MAKEFLAGS) all-recursive
-
-Index: viennarna-1.8.4/man/RNALfold.1.in
-===================================================================
---- viennarna-1.8.4.orig/man/RNALfold.1.in 2011-01-29 20:01:09.000000000 +0100
-+++ viennarna-1.8.4/man/RNALfold.1.in 2011-01-29 20:01:15.000000000 +0100
-@@ -1,5 +1,5 @@
- .\" .ER
--.TH "RNALFOLD" "l" "1.5" "Ivo Hofacker" "ViennaRNA"
-+.TH "RNALFOLD" "1" "1.5" "Ivo Hofacker" "ViennaRNA"
- .SH "NAME"
- RNALfold \- calculate locally stable secondary structures of RNAs
- .SH "SYNOPSIS"
-Index: viennarna-1.8.4/man/RNAaliduplex.1.in
-===================================================================
---- viennarna-1.8.4.orig/man/RNAaliduplex.1.in 2011-01-29 20:01:09.000000000 +0100
-+++ viennarna-1.8.4/man/RNAaliduplex.1.in 2011-01-29 20:01:15.000000000 +0100
-@@ -1,4 +1,4 @@
--.TH "RNAaliduplex" "l" "0.0.1" "Ivo Hofacker" "Vienna RNA"
-+.TH "RNAaliduplex" "1" "0.0.1" "Ivo Hofacker" "Vienna RNA"
- .SH "NAME"
- .LP
- RNAaliduplex \- Predict conserved RNA-RNA interactions between two alignments
-Index: viennarna-1.8.4/man/RNAalifold.1.in
-===================================================================
---- viennarna-1.8.4.orig/man/RNAalifold.1.in 2011-01-29 20:01:09.000000000 +0100
-+++ viennarna-1.8.4/man/RNAalifold.1.in 2011-01-29 20:01:15.000000000 +0100
-@@ -1,6 +1,6 @@
- .\" -*-nroff-*-
- .\" .ER
--.TH "RNAalifold" "l" "1.8" "Ivo Hofacker" "ViennaRNA"
-+.TH "RNAalifold" "1" "1.8" "Ivo Hofacker" "ViennaRNA"
- .SH "NAME"
- RNAalifold \- calculate secondary structures for a set of aligned RNAs
- .SH "SYNOPSIS"
-Index: viennarna-1.8.4/man/RNAcofold.1.in
-===================================================================
---- viennarna-1.8.4.orig/man/RNAcofold.1.in 2011-01-29 20:01:09.000000000 +0100
-+++ viennarna-1.8.4/man/RNAcofold.1.in 2011-01-29 20:01:15.000000000 +0100
-@@ -1,5 +1,5 @@
- .\" .ER
--.TH "RNACOFOLD" "l" "1.6" "Ivo Hofacker" "ViennaRNA"
-+.TH "RNACOFOLD" "1" "1.6" "Ivo Hofacker" "ViennaRNA"
- .SH "NAME"
- RNAcofold \- calculate secondary structures of two RNAs with dimerization
- .SH "SYNOPSIS"
-Index: viennarna-1.8.4/man/RNAdistance.1.in
-===================================================================
---- viennarna-1.8.4.orig/man/RNAdistance.1.in 2011-01-29 20:01:09.000000000 +0100
-+++ viennarna-1.8.4/man/RNAdistance.1.in 2011-01-29 20:01:15.000000000 +0100
-@@ -1,5 +1,5 @@
- .\" .ER
--.TH "RNADISTANCE" "l" "" "Ivo Hofacker" "Vienna RNA"
-+.TH "RNADISTANCE" "1" "" "Ivo Hofacker" "Vienna RNA"
- .SH "NAME"
- RNAdistance \- calculate distances between RNA secondary structures
- .SH "SYNOPSIS"
-Index: viennarna-1.8.4/man/RNAduplex.1.in
-===================================================================
---- viennarna-1.8.4.orig/man/RNAduplex.1.in 2011-01-29 20:01:09.000000000 +0100
-+++ viennarna-1.8.4/man/RNAduplex.1.in 2011-01-29 20:01:15.000000000 +0100
-@@ -1,4 +1,4 @@
--.TH "RNAduplex" "l" "0.0.1" "Ivo Hofacker" "Vienna RNA"
-+.TH "RNAduplex" "1" "0.0.1" "Ivo Hofacker" "Vienna RNA"
- .SH "NAME"
- .LP
- RNAduplex \- Compute the structure upon hybridization of two RNA strands
-Index: viennarna-1.8.4/man/RNAeval.1.in
-===================================================================
---- viennarna-1.8.4.orig/man/RNAeval.1.in 2011-01-29 20:01:09.000000000 +0100
-+++ viennarna-1.8.4/man/RNAeval.1.in 2011-01-29 20:01:15.000000000 +0100
-@@ -1,5 +1,5 @@
- .\" .ER
--.TH "RNAEVAL" "l" "" "Ivo Hofacker" "Vienna RNA"
-+.TH "RNAEVAL" "1" "" "Ivo Hofacker" "Vienna RNA"
- .SH "NAME"
- RNAEVAL \- calculate energy of RNA sequences on given secondary structure
- .SH "SYNOPSIS"
-Index: viennarna-1.8.4/man/RNAfold.1.in
-===================================================================
---- viennarna-1.8.4.orig/man/RNAfold.1.in 2011-01-29 20:01:09.000000000 +0100
-+++ viennarna-1.8.4/man/RNAfold.1.in 2011-01-29 20:01:15.000000000 +0100
-@@ -1,6 +1,6 @@
- .\" -*-nroff-*-
- .\" .ER
--.TH "RNAFOLD" "l" "1.6" "Ivo Hofacker" "ViennaRNA"
-+.TH "RNAFOLD" "1" "1.6" "Ivo Hofacker" "ViennaRNA"
- .SH "NAME"
- RNAfold \- calculate secondary structures of RNAs
- .SH "SYNOPSIS"
-Index: viennarna-1.8.4/man/RNAheat.1.in
-===================================================================
---- viennarna-1.8.4.orig/man/RNAheat.1.in 2011-01-29 20:01:09.000000000 +0100
-+++ viennarna-1.8.4/man/RNAheat.1.in 2011-01-29 20:01:15.000000000 +0100
-@@ -1,5 +1,5 @@
- .\" .ER
--.TH "RNAHEAT" "l" "" "Ivo Hofacker" "Vienna RNA"
-+.TH "RNAHEAT" "1" "" "Ivo Hofacker" "Vienna RNA"
- .SH "NAME"
- RNAheat \- calculate specific heat of RNAs
- .SH "SYNOPSIS"
-Index: viennarna-1.8.4/man/RNAinverse.1.in
-===================================================================
---- viennarna-1.8.4.orig/man/RNAinverse.1.in 2011-01-29 20:01:09.000000000 +0100
-+++ viennarna-1.8.4/man/RNAinverse.1.in 2011-01-29 20:01:15.000000000 +0100
-@@ -1,5 +1,5 @@
- .\" .ER
--.TH "RNAINVERSE" "l" "" "Ivo Hofacker" "Vienna RNA"
-+.TH "RNAINVERSE" "1" "" "Ivo Hofacker" "Vienna RNA"
- .SH "NAME"
- RNAINVERSE \- find RNA sequences with given secondary structure
- .SH "SYNOPSIS"
-Index: viennarna-1.8.4/man/RNApaln.1.in
-===================================================================
---- viennarna-1.8.4.orig/man/RNApaln.1.in 2011-01-29 20:01:09.000000000 +0100
-+++ viennarna-1.8.4/man/RNApaln.1.in 2011-01-29 20:01:15.000000000 +0100
-@@ -1,5 +1,5 @@
- .\" .ER
--.TH "RNAPDIST" "l" "" "Ivo Hofacker" "Vienna RNA"
-+.TH "RNAPDIST" "1" "" "Ivo Hofacker" "Vienna RNA"
- .SH "NAME"
- RNApaln \- RNA alignment based on sequence base pairing propensities
- .SH "SYNOPSIS"
-Index: viennarna-1.8.4/man/RNApdist.1.in
-===================================================================
---- viennarna-1.8.4.orig/man/RNApdist.1.in 2011-01-29 20:01:09.000000000 +0100
-+++ viennarna-1.8.4/man/RNApdist.1.in 2011-01-29 20:01:15.000000000 +0100
-@@ -1,5 +1,5 @@
- .\" .ER
--.TH "RNAPDIST" "l" "" "Ivo Hofacker" "Vienna RNA"
-+.TH "RNAPDIST" "1" "" "Ivo Hofacker" "Vienna RNA"
- .SH "NAME"
- RNApdist \- calculate distances between thermodynamic RNA secondary
- structures ensembles
-Index: viennarna-1.8.4/man/RNAplfold.1.in
-===================================================================
---- viennarna-1.8.4.orig/man/RNAplfold.1.in 2011-01-29 20:01:09.000000000 +0100
-+++ viennarna-1.8.4/man/RNAplfold.1.in 2011-01-29 20:01:15.000000000 +0100
-@@ -1,5 +1,5 @@
- .\" .ER
--.TH "RNAPLFOLD" "l" "1.8" "Stephan Bernhart" "ViennaRNA"
-+.TH "RNAPLFOLD" "1" "1.8" "Stephan Bernhart" "ViennaRNA"
- .SH "NAME"
- RNAplfold \- calculate locally stable secondary structure - pair probabilities
- .SH "SYNOPSIS"
-Index: viennarna-1.8.4/man/RNAplot.1.in
-===================================================================
---- viennarna-1.8.4.orig/man/RNAplot.1.in 2011-01-29 20:01:09.000000000 +0100
-+++ viennarna-1.8.4/man/RNAplot.1.in 2011-01-29 20:01:15.000000000 +0100
-@@ -1,5 +1,5 @@
- .\" .ER
--.TH "RNAPLOT" "l" "" "Ivo Hofacker" "Vienna RNA"
-+.TH "RNAPLOT" "1" "" "Ivo Hofacker" "Vienna RNA"
- .SH "NAME"
- RNAplot \- Draw RNA Secondary Structures
- .SH "SYNOPSIS"
-Index: viennarna-1.8.4/man/RNAsubopt.1.in
-===================================================================
---- viennarna-1.8.4.orig/man/RNAsubopt.1.in 2011-01-29 20:01:09.000000000 +0100
-+++ viennarna-1.8.4/man/RNAsubopt.1.in 2011-01-29 20:01:15.000000000 +0100
-@@ -1,6 +1,6 @@
- \" -*-nroff-*-
- .\" .ER
--.TH "RNASUBOPT" "l" "" "Ivo Hofacker" "Vienna RNA"
-+.TH "RNASUBOPT" "1" "" "Ivo Hofacker" "Vienna RNA"
- .SH "NAME"
- RNAsubopt \- calculate suboptimal secondary structures of RNAs
- .SH "SYNOPSIS"
-Index: viennarna-1.8.4/man/RNAup.1.in
-===================================================================
---- viennarna-1.8.4.orig/man/RNAup.1.in 2011-01-29 20:01:09.000000000 +0100
-+++ viennarna-1.8.4/man/RNAup.1.in 2011-01-29 20:01:15.000000000 +0100
-@@ -1,5 +1,5 @@
- .\" .ER
--.TH "RNAUP" "l" "1.6" "Ivo Hofacker" "ViennaRNA"
-+.TH "RNAUP" "1" "1.6" "Ivo Hofacker" "ViennaRNA"
- .SH "NAME"
- RNAup \- calculates the thermodynamics of RNA-RNA interactions
- .SH "SYNOPSIS"
Modified: trunk/packages/vienna-rna/trunk/debian/patches/series
===================================================================
--- trunk/packages/vienna-rna/trunk/debian/patches/series 2011-01-29 20:48:07 UTC (rev 5769)
+++ trunk/packages/vienna-rna/trunk/debian/patches/series 2011-01-29 20:51:48 UTC (rev 5770)
@@ -1,4 +1,3 @@
fix_install_relative_path.patch
readseq_exclude.patch
fix_manual_pages.patch
-fix_perl_path.patch
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