[med-svn] r7225 - trunk/packages/mgltools/cadd/trunk/debian/patches

Thorsten Alteholz alteholz-guest at alioth.debian.org
Wed Jul 6 17:34:21 UTC 2011 

Author: alteholz-guest
Date: 2011-07-06 17:34:21 +0000 (Wed, 06 Jul 2011)
New Revision: 7225

Added:
   trunk/packages/mgltools/cadd/trunk/debian/patches/remove_ksh.patch
Modified:
   trunk/packages/mgltools/cadd/trunk/debian/patches/series
Log:
replace ksh construct by python

Added: trunk/packages/mgltools/cadd/trunk/debian/patches/remove_ksh.patch
===================================================================
--- trunk/packages/mgltools/cadd/trunk/debian/patches/remove_ksh.patch	                        (rev 0)
+++ trunk/packages/mgltools/cadd/trunk/debian/patches/remove_ksh.patch	2011-07-06 17:34:21 UTC (rev 7225)
@@ -0,0 +1,144 @@
+Description: replace ksh by python
+Author: Thorsten Alteholz <debian at alteholz.de>
+Last-Update: 2011-07-06
+Index: mgltools-cadd-1.5.6.org/CADD/workflows/MDanalysis/NAMDNBCR_0.1_net.py
+===================================================================
+--- mgltools-cadd-1.5.6.org/CADD/workflows/MDanalysis/NAMDNBCR_0.1_net.py	2011-07-06 18:55:53.000000000 +0200
++++ mgltools-cadd-1.5.6.org/CADD/workflows/MDanalysis/NAMDNBCR_0.1_net.py	2011-07-06 18:56:35.000000000 +0200
+@@ -1,4 +1,4 @@
+-#!/bin/ksh ~/.mgltools/pythonsh
++#!/usr/bin/python
+ ########################################################################
+ #
+ #    Vision Network - Python source code - file generated by vision
+Index: mgltools-cadd-1.5.6.org/CADD/workflows/MDanalysis/GROMOSClustering_0.1_net.py
+===================================================================
+--- mgltools-cadd-1.5.6.org/CADD/workflows/MDanalysis/GROMOSClustering_0.1_net.py	2011-07-06 18:55:53.000000000 +0200
++++ mgltools-cadd-1.5.6.org/CADD/workflows/MDanalysis/GROMOSClustering_0.1_net.py	2011-07-06 18:56:35.000000000 +0200
+@@ -1,4 +1,4 @@
+-#!/bin/ksh ~/.mgltools/pythonsh
++#!/usr/bin/python
+ ########################################################################
+ #
+ #    Vision Network - Python source code - file generated by vision
+Index: mgltools-cadd-1.5.6.org/CADD/workflows/MDanalysis/NAMDTeragrid_0.1_net.py
+===================================================================
+--- mgltools-cadd-1.5.6.org/CADD/workflows/MDanalysis/NAMDTeragrid_0.1_net.py	2011-07-06 18:55:53.000000000 +0200
++++ mgltools-cadd-1.5.6.org/CADD/workflows/MDanalysis/NAMDTeragrid_0.1_net.py	2011-07-06 18:56:35.000000000 +0200
+@@ -1,4 +1,4 @@
+-#!/bin/ksh ~/.mgltools/pythonsh
++#!/usr/bin/python
+ ########################################################################
+ #
+ #    Vision Network - Python source code - file generated by vision
+Index: mgltools-cadd-1.5.6.org/CADD/workflows/MDanalysis/TrajQRClustering_0.1_net.py
+===================================================================
+--- mgltools-cadd-1.5.6.org/CADD/workflows/MDanalysis/TrajQRClustering_0.1_net.py	2011-07-06 18:55:53.000000000 +0200
++++ mgltools-cadd-1.5.6.org/CADD/workflows/MDanalysis/TrajQRClustering_0.1_net.py	2011-07-06 18:56:35.000000000 +0200
+@@ -1,4 +1,4 @@
+-#!/bin/ksh ~/.mgltools/pythonsh
++#!/usr/bin/python
+ ########################################################################
+ #
+ #    Vision Network - Python source code - file generated by vision
+Index: mgltools-cadd-1.5.6.org/CADD/workflows/MDanalysis/AMDNBCR_0.2_net.py
+===================================================================
+--- mgltools-cadd-1.5.6.org/CADD/workflows/MDanalysis/AMDNBCR_0.2_net.py	2011-07-06 18:55:53.000000000 +0200
++++ mgltools-cadd-1.5.6.org/CADD/workflows/MDanalysis/AMDNBCR_0.2_net.py	2011-07-06 18:56:35.000000000 +0200
+@@ -1,4 +1,4 @@
+-#!/bin/ksh ~/.mgltools/pythonsh
++#!/usr/bin/python
+ ########################################################################
+ #
+ #    Vision Network - Python source code - file generated by vision
+Index: mgltools-cadd-1.5.6.org/CADD/workflows/docking/AutoDockSL_0.1_net.py
+===================================================================
+--- mgltools-cadd-1.5.6.org/CADD/workflows/docking/AutoDockSL_0.1_net.py	2011-07-06 18:55:53.000000000 +0200
++++ mgltools-cadd-1.5.6.org/CADD/workflows/docking/AutoDockSL_0.1_net.py	2011-07-06 18:56:35.000000000 +0200
+@@ -1,4 +1,4 @@
+-#!/bin/ksh ~/.mgltools/pythonsh
++#!/usr/bin/python
+ ########################################################################
+ #
+ #    Vision Network - Python source code - file generated by vision
+Index: mgltools-cadd-1.5.6.org/CADD/workflows/docking/AutoGrid_0.1_net.py
+===================================================================
+--- mgltools-cadd-1.5.6.org/CADD/workflows/docking/AutoGrid_0.1_net.py	2011-07-06 18:55:53.000000000 +0200
++++ mgltools-cadd-1.5.6.org/CADD/workflows/docking/AutoGrid_0.1_net.py	2011-07-06 18:56:35.000000000 +0200
+@@ -1,4 +1,4 @@
+-#!/bin/ksh ~/.mgltools/pythonsh
++#!/usr/bin/python
+ ########################################################################
+ #
+ #    Vision Network - Python source code - file generated by vision
+Index: mgltools-cadd-1.5.6.org/CADD/workflows/docking/PrepareReceptor_0.1_net.py
+===================================================================
+--- mgltools-cadd-1.5.6.org/CADD/workflows/docking/PrepareReceptor_0.1_net.py	2011-07-06 18:55:53.000000000 +0200
++++ mgltools-cadd-1.5.6.org/CADD/workflows/docking/PrepareReceptor_0.1_net.py	2011-07-06 18:56:35.000000000 +0200
+@@ -1,4 +1,4 @@
+-#!/bin/ksh ~/.mgltools/pythonsh
++#!/usr/bin/python
+ ########################################################################
+ #
+ #    Vision Network - Python source code - file generated by vision
+Index: mgltools-cadd-1.5.6.org/CADD/workflows/virtualScreening/AutoDockML_0.1_net.py
+===================================================================
+--- mgltools-cadd-1.5.6.org/CADD/workflows/virtualScreening/AutoDockML_0.1_net.py	2011-07-06 18:55:53.000000000 +0200
++++ mgltools-cadd-1.5.6.org/CADD/workflows/virtualScreening/AutoDockML_0.1_net.py	2011-07-06 18:56:35.000000000 +0200
+@@ -1,4 +1,4 @@
+-#!/bin/ksh ~/.mgltools/pythonsh
++#!/usr/bin/python
+ ########################################################################
+ #
+ #    Vision Network - Python source code - file generated by vision
+Index: mgltools-cadd-1.5.6.org/CADD/workflows/virtualScreening/AutoDockVSpublic_0.1_net.py
+===================================================================
+--- mgltools-cadd-1.5.6.org/CADD/workflows/virtualScreening/AutoDockVSpublic_0.1_net.py	2011-07-06 18:55:53.000000000 +0200
++++ mgltools-cadd-1.5.6.org/CADD/workflows/virtualScreening/AutoDockVSpublic_0.1_net.py	2011-07-06 18:56:35.000000000 +0200
+@@ -1,4 +1,4 @@
+-#!/bin/ksh ~/.mgltools/pythonsh
++#!/usr/bin/python
+ ########################################################################
+ #
+ #    Vision Network - Python source code - file generated by vision
+Index: mgltools-cadd-1.5.6.org/CADD/workflows/virtualScreening/VinaVSlocal_0.1_net.py
+===================================================================
+--- mgltools-cadd-1.5.6.org/CADD/workflows/virtualScreening/VinaVSlocal_0.1_net.py	2011-07-06 18:55:53.000000000 +0200
++++ mgltools-cadd-1.5.6.org/CADD/workflows/virtualScreening/VinaVSlocal_0.1_net.py	2011-07-06 18:56:35.000000000 +0200
+@@ -1,4 +1,4 @@
+-#!/bin/ksh ~/.mgltools/pythonsh
++#!/usr/bin/python
+ ########################################################################
+ #
+ #    Vision Network - Python source code - file generated by vision
+Index: mgltools-cadd-1.5.6.org/CADD/workflows/virtualScreening/VinaVSpublic_0.1_net.py
+===================================================================
+--- mgltools-cadd-1.5.6.org/CADD/workflows/virtualScreening/VinaVSpublic_0.1_net.py	2011-07-06 18:55:53.000000000 +0200
++++ mgltools-cadd-1.5.6.org/CADD/workflows/virtualScreening/VinaVSpublic_0.1_net.py	2011-07-06 18:56:35.000000000 +0200
+@@ -1,4 +1,4 @@
+-#!/bin/ksh ~/.mgltools/pythonsh
++#!/usr/bin/python
+ ########################################################################
+ #
+ #    Vision Network - Python source code - file generated by vision
+Index: mgltools-cadd-1.5.6.org/CADD/workflows/virtualScreening/AutoDockVSlocal_0.1_net.py
+===================================================================
+--- mgltools-cadd-1.5.6.org/CADD/workflows/virtualScreening/AutoDockVSlocal_0.1_net.py	2011-07-06 18:55:53.000000000 +0200
++++ mgltools-cadd-1.5.6.org/CADD/workflows/virtualScreening/AutoDockVSlocal_0.1_net.py	2011-07-06 18:56:35.000000000 +0200
+@@ -1,4 +1,4 @@
+-#!/bin/ksh ~/.mgltools/pythonsh
++#!/usr/bin/python
+ ########################################################################
+ #
+ #    Vision Network - Python source code - file generated by vision
+Index: mgltools-cadd-1.5.6.org/CADD/workflows/visualization/VSResults_0.1_pmvnet.py
+===================================================================
+--- mgltools-cadd-1.5.6.org/CADD/workflows/visualization/VSResults_0.1_pmvnet.py	2011-07-06 18:55:53.000000000 +0200
++++ mgltools-cadd-1.5.6.org/CADD/workflows/visualization/VSResults_0.1_pmvnet.py	2011-07-06 18:56:35.000000000 +0200
+@@ -1,4 +1,4 @@
+-#!/bin/ksh ~/.mgltools/pythonsh
++#!/usr/bin/python
+ ########################################################################
+ #
+ #    Vision Network - Python source code - file generated by vision
+

Modified: trunk/packages/mgltools/cadd/trunk/debian/patches/series
===================================================================
--- trunk/packages/mgltools/cadd/trunk/debian/patches/series	2011-07-05 13:08:36 UTC (rev 7224)
+++ trunk/packages/mgltools/cadd/trunk/debian/patches/series	2011-07-06 17:34:21 UTC (rev 7225)
@@ -1 +1,2 @@
 fix_shebangs.patch
+remove_ksh.patch

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