[med-svn] r7227 - in trunk/packages: . qtlreaper qtlreaper/trunk qtlreaper/trunk/debian qtlreaper/trunk/debian/source

Thu Jul 7 11:33:37 UTC 2011

Author: moeller
Date: 2011-07-07 11:33:36 +0000 (Thu, 07 Jul 2011)
New Revision: 7227

Added:
   trunk/packages/qtlreaper/
   trunk/packages/qtlreaper/trunk/
   trunk/packages/qtlreaper/trunk/debian/
   trunk/packages/qtlreaper/trunk/debian/README.Debian
   trunk/packages/qtlreaper/trunk/debian/README.source
   trunk/packages/qtlreaper/trunk/debian/changelog
   trunk/packages/qtlreaper/trunk/debian/compat
   trunk/packages/qtlreaper/trunk/debian/control
   trunk/packages/qtlreaper/trunk/debian/copyright
   trunk/packages/qtlreaper/trunk/debian/docs
   trunk/packages/qtlreaper/trunk/debian/qtlreaper.substvars
   trunk/packages/qtlreaper/trunk/debian/rules
   trunk/packages/qtlreaper/trunk/debian/source/
   trunk/packages/qtlreaper/trunk/debian/source/format
   trunk/packages/qtlreaper/trunk/debian/watch
Log:
Initial packaging for qtlreaper.


Added: trunk/packages/qtlreaper/trunk/debian/README.Debian
===================================================================

--- trunk/packages/qtlreaper/trunk/debian/README.Debian	                        (rev 0)
+++ trunk/packages/qtlreaper/trunk/debian/README.Debian	2011-07-07 11:33:36 UTC (rev 7227)
@@ -0,0 +1,8 @@
+qtlreaper for Debian
+--------------------
+
+This package was seeded over a meeting with Rob Williams from upstream
+during the EU SYSGENET workshop in Groningen. It is a preparation for
+getting his http://www.genenetwork.org into the distribution.
+
+ -- Steffen Moeller <moeller at debian.org>  Thu, 07 Jul 2011 00:03:09 +0200

Added: trunk/packages/qtlreaper/trunk/debian/README.source
===================================================================
--- trunk/packages/qtlreaper/trunk/debian/README.source	                        (rev 0)
+++ trunk/packages/qtlreaper/trunk/debian/README.source	2011-07-07 11:33:36 UTC (rev 7227)
@@ -0,0 +1,9 @@
+qtlreaper for Debian
+--------------------
+
+<this file describes information about the source package, see Debian policy
+manual section 4.14. You WILL either need to modify or delete this file>
+
+
+
+

Added: trunk/packages/qtlreaper/trunk/debian/changelog
===================================================================
--- trunk/packages/qtlreaper/trunk/debian/changelog	                        (rev 0)
+++ trunk/packages/qtlreaper/trunk/debian/changelog	2011-07-07 11:33:36 UTC (rev 7227)
@@ -0,0 +1,5 @@
+qtlreaper (1.1.1-1) unstable; urgency=low
+
+  * Initial release (Closes: #nnnn)  <nnnn is the bug number of your ITP>
+
+ -- Steffen Moeller <moeller at debian.org>  Thu, 07 Jul 2011 00:03:09 +0200

Added: trunk/packages/qtlreaper/trunk/debian/compat
===================================================================
--- trunk/packages/qtlreaper/trunk/debian/compat	                        (rev 0)
+++ trunk/packages/qtlreaper/trunk/debian/compat	2011-07-07 11:33:36 UTC (rev 7227)
@@ -0,0 +1 @@
+8

Added: trunk/packages/qtlreaper/trunk/debian/control
===================================================================
--- trunk/packages/qtlreaper/trunk/debian/control	                        (rev 0)
+++ trunk/packages/qtlreaper/trunk/debian/control	2011-07-07 11:33:36 UTC (rev 7227)
@@ -0,0 +1,27 @@
+Source: qtlreaper
+Section: science
+Priority: extra
+Maintainer: Steffen Moeller <moeller at debian.org>
+Build-Depends: debhelper (>= 8.0.0)
+Standards-Version: 3.9.2
+Homepage: http://qtlreaper.sf.net
+XS-Python-Version: >= 2.5
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/qtlreaper/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/qtlreaper/trunk/
+
+Package: python-reaper
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: QTL analysis for expression data
+ QTL Reaper is software, written in C and compiled as a Python module, for
+ rapidly scanning microarray expression data for QTLs. It is essentially
+ the batch-oriented version of WebQTL. It requires, as input, expression
+ data from members of a set of recombinant inbred lines and genotype
+ information for the same lines. It searches for an association between
+ each expression trait and all genotypes and evaluates that association
+ by a permutation test. For the permutation test, it performs only as
+ many permutations as are necessary to define the empirical P-value to a
+ reasonable precision. It also performs bootstrap resampling to estimate
+ the confidence region for the location of a putative QTL.
+ .
+ The reaper module is used underneath the http://genenetwork.org site.

Added: trunk/packages/qtlreaper/trunk/debian/copyright
===================================================================
--- trunk/packages/qtlreaper/trunk/debian/copyright	                        (rev 0)
+++ trunk/packages/qtlreaper/trunk/debian/copyright	2011-07-07 11:33:36 UTC (rev 7227)
@@ -0,0 +1,36 @@
+Format: http://dep.debian.net/deps/dep5
+Upstream-Name: qtlreaper
+Source: <url://example.com>
+
+Files: *
+Copyright: <years> <put author's name and email here>
+           <years> <likewise for another author>
+License: <special license>
+ <Put the license of the package here indented by 1 space>
+ <This follows the format of Description: lines in control file>
+ .
+ <Including paragraphs>
+
+# If you want to use GPL v2 or later for the /debian/* files use 
+# the following clauses, or change it to suit. Delete these two lines
+Files: debian/*
+Copyright: 2011 Steffen Moeller <moeller at debian.org>
+License: GPL-2+
+ This package is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+ .
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>
+ .
+ On Debian systems, the complete text of the GNU General
+ Public License version 2 can be found in "/usr/share/common-licenses/GPL-2".
+
+# Please also look if there are files or directories which have a
+# different copyright/license attached and list them here.

Added: trunk/packages/qtlreaper/trunk/debian/docs
===================================================================
--- trunk/packages/qtlreaper/trunk/debian/docs	                        (rev 0)
+++ trunk/packages/qtlreaper/trunk/debian/docs	2011-07-07 11:33:36 UTC (rev 7227)
@@ -0,0 +1 @@
+whatsnew.txt

Added: trunk/packages/qtlreaper/trunk/debian/qtlreaper.substvars
===================================================================
--- trunk/packages/qtlreaper/trunk/debian/qtlreaper.substvars	                        (rev 0)
+++ trunk/packages/qtlreaper/trunk/debian/qtlreaper.substvars	2011-07-07 11:33:36 UTC (rev 7227)
@@ -0,0 +1,4 @@
+python:Versions=2.6, 2.7
+python:Depends=python2.6 | python2.7, python (>= 2.6), python (<< 2.8)
+shlibs:Depends=libc6 (>= 2.2.5)
+misc:Depends=

Added: trunk/packages/qtlreaper/trunk/debian/rules
===================================================================
--- trunk/packages/qtlreaper/trunk/debian/rules	                        (rev 0)
+++ trunk/packages/qtlreaper/trunk/debian/rules	2011-07-07 11:33:36 UTC (rev 7227)
@@ -0,0 +1,13 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+# Sample debian/rules that uses debhelper.
+# This file was originally written by Joey Hess and Craig Small.
+# As a special exception, when this file is copied by dh-make into a
+# dh-make output file, you may use that output file without restriction.
+# This special exception was added by Craig Small in version 0.37 of dh-make.
+
+# Uncomment this to turn on verbose mode.
+#export DH_VERBOSE=1
+
+%:
+	dh $@ --with python2


Property changes on: trunk/packages/qtlreaper/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
   + *

Added: trunk/packages/qtlreaper/trunk/debian/source/format
===================================================================
--- trunk/packages/qtlreaper/trunk/debian/source/format	                        (rev 0)
+++ trunk/packages/qtlreaper/trunk/debian/source/format	2011-07-07 11:33:36 UTC (rev 7227)
@@ -0,0 +1 @@
+3.0 (quilt)

Added: trunk/packages/qtlreaper/trunk/debian/watch
===================================================================
--- trunk/packages/qtlreaper/trunk/debian/watch	                        (rev 0)
+++ trunk/packages/qtlreaper/trunk/debian/watch	2011-07-07 11:33:36 UTC (rev 7227)
@@ -0,0 +1,2 @@
+version=3
+http://sf.net/qtlreaper/qtlreaper-(.*)\.tar\.gz


