[med-svn] [SCM] fastx-toolkit branch, meta, updated. 8fb6c4607cdc0f90e2ffdea9959c2c79760c94f6
Charles Plessy
plessy at debian.org
Fri Jul 8 04:51:27 UTC 2011
The following commit has been merged in the meta branch:
commit 8fb6c4607cdc0f90e2ffdea9959c2c79760c94f6
Author: Charles Plessy <plessy at debian.org>
Date: Fri Jul 8 13:50:46 2011 +0900
Uploaded fastx-toolkit_0.0.13.1-1_amd64.changes to unstable.
diff --git a/amd64.changes b/amd64.changes
index 2428f47..01ff461 100644
--- a/amd64.changes
+++ b/amd64.changes
@@ -2,52 +2,55 @@
Hash: SHA256
Format: 1.8
-Date: Thu, 14 Apr 2011 14:00:57 +0900
+Date: Fri, 08 Jul 2011 13:11:37 +0900
Source: fastx-toolkit
Binary: fastx-toolkit
Architecture: source amd64
-Version: 0.0.13-1
+Version: 0.0.13.1-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
fastx-toolkit - FASTQ/A short nucleotide reads pre-processing tools
-Closes: 622700
+Closes: 626761
Changes:
- fastx-toolkit (0.0.13-1) unstable; urgency=low
+ fastx-toolkit (0.0.13.1-1) unstable; urgency=low
.
- * Initial release (Closes: #622700)
+ * New upstream release (Closes: #626761).
+ * Incremented Standards-Version to reflect conformance with Policy 3.9.2
+ (debian/control, no changes needed).
+ * Corrected Vcs-Git URL (debian/control).
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Files:
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- 50b06d529087dd60a348902f91f55d0a 566587 science optional fastx-toolkit_0.0.13.orig.tar.bz2
- 0820662f676a79c9c76435f7193d1409 14318 science optional fastx-toolkit_0.0.13-1.debian.tar.gz
- 0ddb3e88ec52d5abdf81cd0c070b864e 110336 science optional fastx-toolkit_0.0.13-1_amd64.deb
+ 95ab1cf0d424bf1928814a863207510f 2023 science optional fastx-toolkit_0.0.13.1-1.dsc
+ 3b0acec3aef0241d46f4c709d5714f09 1153417 science optional fastx-toolkit_0.0.13.1.orig.tar.bz2
+ 80c91bf5df6a27f66e7dd32d892daae3 14317 science optional fastx-toolkit_0.0.13.1-1.debian.tar.gz
+ 9369f98ae50fad5c455593636a08dcf3 107906 science optional fastx-toolkit_0.0.13.1-1_amd64.deb
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diff --git a/amd64.log b/amd64.log
index 622aabc..4741452 100644
--- a/amd64.log
+++ b/amd64.log
@@ -1,25 +1,23 @@
-sbuild (Debian sbuild) 0.62.2 (05 Apr 2011) on anx191
+sbuild (Debian sbuild) 0.62.4 (25 Jun 2011) on anx191
╔══════════════════════════════════════════════════════════════════════════════╗
-║ fastx-toolkit 0.0.13-1 (amd64) 14 Apr 2011 14:48 ║
+║ fastx-toolkit 0.0.13.1-1 (amd64) 08 Jul 2011 13:40 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: fastx-toolkit
-Version: 0.0.13-1
-Source Version: 0.0.13-1
+Version: 0.0.13.1-1
+Source Version: 0.0.13.1-1
Distribution: unstable
Architecture: amd64
-I: NOTICE: Log filtering will replace 'build/fastx-toolkit-QvQH8k' with '«BUILDDIR»'
-I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-09c94218-aa24-450c-89f5-40bffdbb1fac' with '«CHROOT»'
+I: NOTICE: Log filtering will replace 'build/fastx-toolkit-CdUyoC/fastx-toolkit-0.0.13.1' with '«PKGBUILDDIR»'
+I: NOTICE: Log filtering will replace 'build/fastx-toolkit-CdUyoC' with '«BUILDDIR»'
+I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-ac4d8d47-34e4-42d2-a485-5f039dabc23b' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
-Hit http://ftp.riken.jp sid InRelease
-Hit http://ftp.riken.jp sid/main amd64 Packages/DiffIndex
-Hit http://ftp.riken.jp sid/main TranslationIndex
Hit http://ftp.jp.debian.org sid InRelease
Hit http://ftp.jp.debian.org sid/main amd64 Packages/DiffIndex
Hit http://ftp.jp.debian.org sid/main TranslationIndex
@@ -37,14 +35,14 @@ Reading state information...
Local sources
─────────────
-fastx-toolkit_0.0.13-1.dsc exists in .; copying to chroot
+fastx-toolkit_0.0.13.1-1.dsc exists in .; copying to chroot
Check arch
──────────
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
-dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-yXrqHw/apt_archive/sbuild-build-depends-core-dummy.deb'.
+dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-7E888t/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
@@ -56,19 +54,14 @@ Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
-The following NEW packages will be installed:
- sbuild-build-depends-core-dummy
-debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
-Need to get 0 B/700 B of archives.
-After this operation, 0 B of additional disk space will be used.
-Selecting previously deselected package sbuild-build-depends-core-dummy.
-(Reading database ... 10291 files and directories currently installed.)
-Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ...
-Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+sbuild-build-depends-core-dummy is already the newest version.
+The following packages were automatically installed and are no longer required:
+ gettext-base libncursesw5 dialog
+Use 'apt-get autoremove' to remove them.
+0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), autotools-dev, pkg-config, libgtextutils-dev
Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), autotools-dev, pkg-config, libgtextutils-dev
-dpkg-deb: building package `sbuild-build-depends-fastx-toolkit-dummy' in `/«BUILDDIR»/resolver-Ela15Q/apt_archive/sbuild-build-depends-fastx-toolkit-dummy.deb'.
+dpkg-deb: building package `sbuild-build-depends-fastx-toolkit-dummy' in `/«BUILDDIR»/resolver-vs0Xm_/apt_archive/sbuild-build-depends-fastx-toolkit-dummy.deb'.
OK
Reading package lists...
@@ -80,58 +73,55 @@ Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
+The following packages were automatically installed and are no longer required:
+ libncursesw5 dialog
+Use 'apt-get autoremove' to remove them.
The following extra packages will be installed:
- autotools-dev bsdmainutils cdbs debhelper file gettext gettext-base
- groff-base html2text intltool-debian libcroco3 libglib2.0-0
- libgtextutils-dev libgtextutils0 libmagic1 libpcre3 libpipeline1 libpopt0
- libunistring0 libxml2 man-db pkg-config po-debconf
+ autotools-dev cdbs debhelper file gettext groff-base html2text
+ intltool-debian libcroco3 libglib2.0-0 libgtextutils-dev libgtextutils0
+ libmagic1 libpcre3 libpipeline1 libpopt0 libunistring0 libxml2 man-db
+ pkg-config po-debconf
Suggested packages:
- wamerican wordlist whois vacation devscripts doc-base dh-make gettext-doc
- groff less www-browser libmail-box-perl
+ devscripts dh-make gettext-doc groff less www-browser libmail-box-perl
Recommended packages:
curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core
libmail-sendmail-perl
The following NEW packages will be installed:
- autotools-dev bsdmainutils cdbs debhelper file gettext gettext-base
- groff-base html2text intltool-debian libcroco3 libglib2.0-0
- libgtextutils-dev libgtextutils0 libmagic1 libpcre3 libpipeline1 libpopt0
- libunistring0 libxml2 man-db pkg-config po-debconf
- sbuild-build-depends-fastx-toolkit-dummy
+ autotools-dev cdbs debhelper file gettext groff-base html2text
+ intltool-debian libcroco3 libglib2.0-0 libgtextutils-dev libgtextutils0
+ libmagic1 libpcre3 libpipeline1 libpopt0 libunistring0 libxml2 man-db
+ pkg-config po-debconf sbuild-build-depends-fastx-toolkit-dummy
debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 24 newly installed, 0 to remove and 0 not upgraded.
-Need to get 0 B/10.7 MB of archives.
-After this operation, 29.8 MB of additional disk space will be used.
-Selecting previously deselected package bsdmainutils.
-(Reading database ... 10291 files and directories currently installed.)
-Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_amd64.deb) ...
-Selecting previously deselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-5_amd64.deb) ...
+0 upgraded, 22 newly installed, 0 to remove and 0 not upgraded.
+Need to get 0 B/9158 kB of archives.
+After this operation, 26.7 MB of additional disk space will be used.
Selecting previously deselected package libpipeline1.
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-1_amd64.deb) ...
+(Reading database ... 11278 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_amd64.deb) ...
+Selecting previously deselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.21-6_amd64.deb) ...
Selecting previously deselected package libpopt0.
Unpacking libpopt0 (from .../libpopt0_1.16-1_amd64.deb) ...
Selecting previously deselected package man-db.
Unpacking man-db (from .../man-db_2.6.0.2-1_amd64.deb) ...
Selecting previously deselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.04-5_amd64.deb) ...
+Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_amd64.deb) ...
Selecting previously deselected package file.
-Unpacking file (from .../archives/file_5.04-5_amd64.deb) ...
-Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_amd64.deb) ...
+Unpacking file (from .../file_5.04-5+b1_amd64.deb) ...
Selecting previously deselected package libpcre3.
Unpacking libpcre3 (from .../libpcre3_8.12-3_amd64.deb) ...
Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2_amd64.deb) ...
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-3_amd64.deb) ...
Selecting previously deselected package autotools-dev.
-Unpacking autotools-dev (from .../autotools-dev_20100122.1_all.deb) ...
+Unpacking autotools-dev (from .../autotools-dev_20110511.1_all.deb) ...
Selecting previously deselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_amd64.deb) ...
Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.4-1_amd64.deb) ...
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_amd64.deb) ...
Selecting previously deselected package libcroco3.
Unpacking libcroco3 (from .../libcroco3_0.6.2-1_amd64.deb) ...
Selecting previously deselected package libunistring0.
-Unpacking libunistring0 (from .../libunistring0_0.9.3-3_amd64.deb) ...
+Unpacking libunistring0 (from .../libunistring0_0.9.3-4_amd64.deb) ...
Selecting previously deselected package gettext.
Unpacking gettext (from .../gettext_0.18.1.1-3_amd64.deb) ...
Selecting previously deselected package intltool-debian.
@@ -139,44 +129,40 @@ Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) .
Selecting previously deselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.1.3_all.deb) ...
+Unpacking debhelper (from .../debhelper_8.9.0_all.deb) ...
Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.92_all.deb) ...
+Unpacking cdbs (from .../archives/cdbs_0.4.94_all.deb) ...
Selecting previously deselected package libgtextutils0.
-Unpacking libgtextutils0 (from .../libgtextutils0_0.6-1_amd64.deb) ...
+Unpacking libgtextutils0 (from .../libgtextutils0_0.6.2-1_amd64.deb) ...
Selecting previously deselected package libgtextutils-dev.
-Unpacking libgtextutils-dev (from .../libgtextutils-dev_0.6-1_amd64.deb) ...
+Unpacking libgtextutils-dev (from .../libgtextutils-dev_0.6.2-1_amd64.deb) ...
Selecting previously deselected package pkg-config.
-Unpacking pkg-config (from .../pkg-config_0.25-1.1_amd64.deb) ...
+Unpacking pkg-config (from .../pkg-config_0.26-1_amd64.deb) ...
Selecting previously deselected package sbuild-build-depends-fastx-toolkit-dummy.
Unpacking sbuild-build-depends-fastx-toolkit-dummy (from .../sbuild-build-depends-fastx-toolkit-dummy.deb) ...
-Setting up bsdmainutils (8.2.2) ...
-update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
-update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.21-5) ...
-Setting up libpipeline1 (1.2.0-1) ...
+Setting up libpipeline1 (1.2.0-3) ...
+Setting up groff-base (1.21-6) ...
Setting up libpopt0 (1.16-1) ...
Setting up man-db (2.6.0.2-1) ...
Building database of manual pages ...
-Setting up libmagic1 (5.04-5) ...
-Setting up file (5.04-5) ...
-Setting up gettext-base (0.18.1.1-3) ...
+Setting up libmagic1 (5.04-5+b1) ...
+Setting up file (5.04-5+b1) ...
Setting up libpcre3 (8.12-3) ...
-Setting up libxml2 (2.7.8.dfsg-2) ...
-Setting up autotools-dev (20100122.1) ...
+Setting up libxml2 (2.7.8.dfsg-3) ...
+Setting up autotools-dev (20110511.1) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libglib2.0-0 (2.28.4-1) ...
+Setting up libglib2.0-0 (2.28.6-1) ...
No schema files found: doing nothing.
Setting up libcroco3 (0.6.2-1) ...
-Setting up libunistring0 (0.9.3-3) ...
+Setting up libunistring0 (0.9.3-4) ...
Setting up gettext (0.18.1.1-3) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.1.3) ...
-Setting up cdbs (0.4.92) ...
-Setting up libgtextutils0 (0.6-1) ...
-Setting up libgtextutils-dev (0.6-1) ...
-Setting up pkg-config (0.25-1.1) ...
+Setting up debhelper (8.9.0) ...
+Setting up cdbs (0.4.94) ...
+Setting up libgtextutils0 (0.6.2-1) ...
+Setting up libgtextutils-dev (0.6.2-1) ...
+Setting up pkg-config (0.26-1) ...
Setting up sbuild-build-depends-fastx-toolkit-dummy (0.invalid.0) ...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -184,8 +170,8 @@ Setting up sbuild-build-depends-fastx-toolkit-dummy (0.invalid.0) ...
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 2.6.32-5-amd64 amd64 (x86_64)
-Toolchain package versions: binutils_2.21.0.20110327-3 dpkg-dev_1.16.0.1 g++-4.5_4.5.2-9 gcc-4.5_4.5.2-9 libc6-dev_2.11.2-13 libstdc++6_4.6.0-2 libstdc++6-4.5-dev_4.5.2-9 linux-libc-dev_2.6.38-3
-Package versions: apt_0.8.13.2 autotools-dev_20100122.1 base-files_6.3 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.0.20110327-3 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.92 coreutils_8.5-1 cpp_4:4.5.2-5 cpp-4.5_4.5.2-9 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-i18n_1.5.38 debfoster_2.7-1.1 debhelper_8.1.3 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpkg_1.16.0.1 dpkg-dev_1.16.0.1 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.15.1-1 file_5.04-5 findutils_4.4.2-1+b1 g++_4:4.5.2-5 g++-4.5_4.5.2-9 gcc_4:4.5.2-5 gcc-4.4-base_4.4.5-15 gcc-4.5_4.5.2-9 gcc-4.5-base_4.5.2-9 gcc-4.6-base_4.6.0-2 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.2 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-13 libc-dev-bin_2.11.2-13 libc6_2.11.2-13 libc6-dev_2.11.2-13 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-13 libdb4.8_4.8.30-5 libdpkg-perl_1.16.0.1 libelfg0_0.8.13-1 libgc1c2_1:7.1-7 libgcc1_1:4.6.0-2 libgdbm3_1.8.3-9 libglib2.0-0_2.28.4-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.0-2 libgtextutils-dev_0.6-1 libgtextutils0_0.6-1 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpc2_0.9-2 libmpfr4_3.0.0-9 libncurses5_5.9-1 libpam-modules_1.1.2-2 libpam-runtime_1.1.2-2 libpam0g_1.1.2-2 libpcre3_8.12-3 libpipeline1_1.2.0-1 libpopt0_1.16-1 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libreadline6_6.1-3 libselinux1_2.0.98-1 libsepol1_2.0.42-1 libslang2_2.2.4-1 libss2_1.41.12-2 libstdc++6_4.6.0-2 libstdc++6-4.5-dev_4.5.2-9 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.38-3 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.10.1-19 perl-base_5.10.1-19 perl-modules_5.10.1-19 pkg-config_0.25-1.1 po-debconf_1.0.16+nmu1 readline-common_6.1-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-fastx-toolkit-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.2 sysvinit_2.88dsf-13.2 sysvinit-utils_2.88dsf-13.2 tar_1.25-3 tzdata_2011e-1 util-linux_2.17.2-9.1 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.21.52.20110707-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-2 gcc-4.6_4.6.1-2 libc6-dev_2.13-10 libstdc++6_4.6.1-2 libstdc++6-4.6-dev_4.6.1-2 linux-libc-dev_2.6.39-3
+Package versions: apt_0.8.15.1 autotools-dev_20110511.1 base-files_6.4 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.52.20110707-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-2 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.94 coreutils_8.5-1 cpp_4:4.6.0-6 cpp-4.6_4.6.1-2 dash_0.5.5.1-7.4 debconf_1.5.40 debconf-i18n_1.5.40 debfoster_2.7-1.1 debhelper_8.9.0 debian-archive-keyring_2010.08.28 debianutils_4.0.2 dialog_1.1-20110630-1 diffutils_1:3.0-1 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1+b1 g++_4:4.6.0-6 g++-4.6_4.6.1-2 gcc_4:4.6.0-6 gcc-4.6_4.6.1-2 gcc-4.6-base_4.6.1-2 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.8-2 groff-base_1.21-6 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.10 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-2 libattr1_1:2.4.46-2 libblkid1_2.19.1-2 libbz2-1.0_1.0.5-6 libc-bin_2.13-10 libc-dev-bin_2.13-10 libc6_2.13-10 libc6-dev_2.13-10 libclass-isa-perl_0.36-1 libcloog-ppl0_0.15.9-3 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdb5.1_5.1.25-11 libdpkg-perl_1.16.0.3 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-2 libgdbm3_1.8.3-10 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.1-2 libgpm2_1.20.4-3.4 libgtextutils-dev_0.6.2-1 libgtextutils0_0.6.2-1 liblocale-gettext-perl_1.05-6+b1 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmount1_2.19.1-2 libmpc2_0.9-3 libmpfr4_3.0.1-4 libncurses5_5.9-1 libncursesw5_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpcre3_8.12-3 libpipeline1_1.2.0-3 libpng12-0_1.2.44-3 libpod-plainer-perl_1.03-1 libpopt0_1.16-1 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libquadmath0_4.6.1-2 libreadline6_6.2-2 libselinux1_2.0.98-1.1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libss2_1.42~WIP-2011-07-02-1 libstdc++6_4.6.1-2 libstdc++6-4.6-dev_4.6.1-2 libswitch-perl_2.16-1 libtext-charwidth-perl_0.04-6+b1 libtext-iconv-perl_1.7-2+b1 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.19.1-2 libxml2_2.7.8.dfsg-3 linux-libc-dev_2.6.39-3 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 mount_2.19.1-2 multiarch-support_2.13-10 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-1 perl-base_5.12.4-1 perl-modules_5.12.4-1 pkg-config_0.26-1 po-debconf_1.0.16+nmu1 readline-common_6.2-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-fastx-toolkit-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.10 sysvinit_2.88dsf-13.10 sysvinit-utils_2.88dsf-13.10 tar_1.25-3 tzdata_2011h-3 util-linux_2.19.1-2 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -195,16 +181,34 @@ Package versions: apt_0.8.13.2 autotools-dev_20100122.1 base-files_6.3 base-pass
Unpack source
─────────────
-dpkg-source: warning: extracting unsigned source package (fastx-toolkit_0.0.13-1.dsc)
-dpkg-source: info: extracting fastx-toolkit in fastx-toolkit-0.0.13
-dpkg-source: info: unpacking fastx-toolkit_0.0.13.orig.tar.bz2
-dpkg-source: info: unpacking fastx-toolkit_0.0.13-1.debian.tar.gz
+dpkg-source: warning: extracting unsigned source package (fastx-toolkit_0.0.13.1-1.dsc)
+dpkg-source: info: extracting fastx-toolkit in fastx-toolkit-0.0.13.1
+dpkg-source: info: unpacking fastx-toolkit_0.0.13.1.orig.tar.bz2
+dpkg-source: info: unpacking fastx-toolkit_0.0.13.1-1.debian.tar.gz
Check disc space
────────────────
Sufficient free space for build
+User Environment
+────────────────
+
+HOME=/sbuild-nonexistent
+LOGNAME=charles
+PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
+SCHROOT_CHROOT_NAME=sid-amd64-sbuild
+SCHROOT_COMMAND=env
+SCHROOT_GID=1000
+SCHROOT_GROUP=charles
+SCHROOT_SESSION_ID=sid-amd64-sbuild-ac4d8d47-34e4-42d2-a485-5f039dabc23b
+SCHROOT_UID=31051
+SCHROOT_USER=charles
+SHELL=/bin/sh
+TERM=xterm
+USER=charles
+USERNAME=charles
+
dpkg-buildpackage
─────────────────
@@ -214,9 +218,9 @@ dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package fastx-toolkit
-dpkg-buildpackage: source version 0.0.13-1
+dpkg-buildpackage: source version 0.0.13.1-1
dpkg-buildpackage: source changed by Charles Plessy <plessy at debian.org>
- dpkg-source --before-build fastx-toolkit-0.0.13
+ dpkg-source --before-build fastx-toolkit-0.0.13.1
dpkg-buildpackage: host architecture amd64
fakeroot debian/rules clean
test -x debian/rules
@@ -224,8 +228,8 @@ dh_testroot
rm -f debian/stamp-makefile-build debian/stamp-makefile-install
/usr/bin/make -C . -k distclean
make[1]: *** No rule to make target `distclean'.
-make[1]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13'
-make[1]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13'
+make[1]: Entering directory `/«PKGBUILDDIR»'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
make: [makefile-clean] Error 2 (ignored)
rm -f debian/stamp-autotools
rmdir --ignore-fail-on-non-empty .
@@ -238,11 +242,11 @@ for i in ./config/config.guess ./config/config.sub ; do \
done
dh_clean
rm -f debian/stamp-autotools-files
- dpkg-source -b fastx-toolkit-0.0.13
+ dpkg-source -b fastx-toolkit-0.0.13.1
dpkg-source: info: using source format `3.0 (quilt)'
-dpkg-source: info: building fastx-toolkit using existing ./fastx-toolkit_0.0.13.orig.tar.bz2
-dpkg-source: info: building fastx-toolkit in fastx-toolkit_0.0.13-1.debian.tar.gz
-dpkg-source: info: building fastx-toolkit in fastx-toolkit_0.0.13-1.dsc
+dpkg-source: info: building fastx-toolkit using existing ./fastx-toolkit_0.0.13.1.orig.tar.bz2
+dpkg-source: info: building fastx-toolkit in fastx-toolkit_0.0.13.1-1.debian.tar.gz
+dpkg-source: info: building fastx-toolkit in fastx-toolkit_0.0.13.1-1.dsc
debian/rules build
test -x debian/rules
mkdir -p "."
@@ -263,9 +267,10 @@ if test -e /usr/share/misc/config.sub ; then \
done ; \
fi
touch debian/stamp-autotools-files
-chmod a+x /«BUILDDIR»/fastx-toolkit-0.0.13/./configure
+chmod a+x /«PKGBUILDDIR»/./configure
mkdir -p .
-cd . && CFLAGS="-g -O2 -g -O2" CXXFLAGS="-g -O2 -g -O2" CPPFLAGS="" LDFLAGS="" /«BUILDDIR»/fastx-toolkit-0.0.13/./configure --build=x86_64-linux-gnu --prefix=/usr --includedir="\${prefix}/include" --mandir="\${prefix}/share/man" --infodir="\${prefix}/share/info" --sysconfdir=/etc --localstatedir=/var --libexecdir="\${prefix}/lib/fastx-toolkit" --srcdir=. --disable-maintainer-mode --disable-dependency-tracking --disable-silent-rules
+cd . && CFLAGS="-g -O2 -g -O2 -Wall" CXXFLAGS="-g -O2 -g -O2 -Wall" CPPFLAGS="" LDFLAGS="" /«PKGBUILDDIR»/./configure --build=x86_64-linux-gnu --prefix=/usr --includedir="\${prefix}/include" --mandir="\${prefix}/share/man" --infodir="\${prefix}/share/info" --sysconfdir=/etc --localstatedir=/var --libexecdir="\${prefix}/lib/fastx-toolkit" --srcdir=. --disable-maintainer-mode --disable-dependency-tracking --disable-silent-rules
+configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-silent-rules
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
@@ -273,10 +278,10 @@ checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking for gcc... gcc
-checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
-checking whether we are cross compiling... no
+checking for C compiler default output file name... a.out
checking for suffix of executables...
+checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
@@ -390,182 +395,182 @@ config.status: creating build_scripts/Makefile
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
+configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-silent-rules
touch debian/stamp-autotools
/usr/bin/make -C .
-make[1]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13'
+make[1]: Entering directory `/«PKGBUILDDIR»'
/usr/bin/make all-recursive
-make[2]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13'
+make[2]: Entering directory `/«PKGBUILDDIR»'
Making all in m4
-make[3]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/m4'
+make[3]: Entering directory `/«PKGBUILDDIR»/m4'
make[3]: Nothing to be done for `all'.
-make[3]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/m4'
+make[3]: Leaving directory `/«PKGBUILDDIR»/m4'
Making all in src
-make[3]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src'
+make[3]: Entering directory `/«PKGBUILDDIR»/src'
Making all in libfastx
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/libfastx'
-gcc -DHAVE_CONFIG_H -I. -I../.. -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c chomp.c
-gcc -DHAVE_CONFIG_H -I. -I../.. -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx.c
-gcc -DHAVE_CONFIG_H -I. -I../.. -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_args.c
-g++ -DHAVE_CONFIG_H -I. -I../.. -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o sequence_alignment.o sequence_alignment.cpp
+make[4]: Entering directory `/«PKGBUILDDIR»/src/libfastx'
+gcc -DHAVE_CONFIG_H -I. -I../.. -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c chomp.c
+gcc -DHAVE_CONFIG_H -I. -I../.. -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx.c
+gcc -DHAVE_CONFIG_H -I. -I../.. -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_args.c
+g++ -DHAVE_CONFIG_H -I. -I../.. -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o sequence_alignment.o sequence_alignment.cpp
rm -f libfastx.a
ar cru libfastx.a chomp.o fastx.o fastx_args.o sequence_alignment.o
ranlib libfastx.a
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/libfastx'
+make[4]: Leaving directory `/«PKGBUILDDIR»/src/libfastx'
Making all in fastx_clipper
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_clipper'
-g++ -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o fastx_clipper.o fastx_clipper.cpp
-/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -o fastx_clipper fastx_clipper.o ../libfastx/libfastx.a
-libtool: link: g++ -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -o fastx_clipper fastx_clipper.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_clipper'
+make[4]: Entering directory `/«PKGBUILDDIR»/src/fastx_clipper'
+g++ -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o fastx_clipper.o fastx_clipper.cpp
+/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -o fastx_clipper fastx_clipper.o ../libfastx/libfastx.a
+libtool: link: g++ -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -o fastx_clipper fastx_clipper.o ../libfastx/libfastx.a
+make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastx_clipper'
Making all in fastx_trimmer
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_trimmer'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_trimmer.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastx_trimmer fastx_trimmer.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastx_trimmer fastx_trimmer.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_trimmer'
+make[4]: Entering directory `/«PKGBUILDDIR»/src/fastx_trimmer'
+gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_trimmer.c
+/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastx_trimmer fastx_trimmer.o ../libfastx/libfastx.a
+libtool: link: gcc -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastx_trimmer fastx_trimmer.o ../libfastx/libfastx.a
+make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastx_trimmer'
Making all in fastx_quality_stats
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_quality_stats'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_quality_stats.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastx_quality_stats fastx_quality_stats.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastx_quality_stats fastx_quality_stats.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_quality_stats'
+make[4]: Entering directory `/«PKGBUILDDIR»/src/fastx_quality_stats'
+gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_quality_stats.c
+/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastx_quality_stats fastx_quality_stats.o ../libfastx/libfastx.a
+libtool: link: gcc -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastx_quality_stats fastx_quality_stats.o ../libfastx/libfastx.a
+make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastx_quality_stats'
Making all in fastq_quality_converter
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastq_quality_converter'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_quality_converter.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastq_quality_converter fastq_quality_converter.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastq_quality_converter fastq_quality_converter.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastq_quality_converter'
+make[4]: Entering directory `/«PKGBUILDDIR»/src/fastq_quality_converter'
+gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_quality_converter.c
+/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastq_quality_converter fastq_quality_converter.o ../libfastx/libfastx.a
+libtool: link: gcc -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastq_quality_converter fastq_quality_converter.o ../libfastx/libfastx.a
+make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastq_quality_converter'
Making all in fastq_to_fasta
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastq_to_fasta'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_to_fasta.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastq_to_fasta fastq_to_fasta.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastq_to_fasta fastq_to_fasta.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastq_to_fasta'
+make[4]: Entering directory `/«PKGBUILDDIR»/src/fastq_to_fasta'
+gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_to_fasta.c
+/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastq_to_fasta fastq_to_fasta.o ../libfastx/libfastx.a
+libtool: link: gcc -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastq_to_fasta fastq_to_fasta.o ../libfastx/libfastx.a
+make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastq_to_fasta'
Making all in fastq_quality_filter
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastq_quality_filter'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_quality_filter.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastq_quality_filter fastq_quality_filter.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastq_quality_filter fastq_quality_filter.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastq_quality_filter'
+make[4]: Entering directory `/«PKGBUILDDIR»/src/fastq_quality_filter'
+gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_quality_filter.c
+/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastq_quality_filter fastq_quality_filter.o ../libfastx/libfastx.a
+libtool: link: gcc -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastq_quality_filter fastq_quality_filter.o ../libfastx/libfastx.a
+make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastq_quality_filter'
Making all in fastq_quality_trimmer
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastq_quality_trimmer'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_quality_trimmer.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastq_quality_trimmer fastq_quality_trimmer.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastq_quality_trimmer fastq_quality_trimmer.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastq_quality_trimmer'
+make[4]: Entering directory `/«PKGBUILDDIR»/src/fastq_quality_trimmer'
+gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_quality_trimmer.c
+/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastq_quality_trimmer fastq_quality_trimmer.o ../libfastx/libfastx.a
+libtool: link: gcc -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastq_quality_trimmer fastq_quality_trimmer.o ../libfastx/libfastx.a
+make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastq_quality_trimmer'
Making all in fastx_artifacts_filter
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_artifacts_filter'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_artifacts_filter.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastx_artifacts_filter fastx_artifacts_filter.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastx_artifacts_filter fastx_artifacts_filter.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_artifacts_filter'
+make[4]: Entering directory `/«PKGBUILDDIR»/src/fastx_artifacts_filter'
+gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_artifacts_filter.c
+/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastx_artifacts_filter fastx_artifacts_filter.o ../libfastx/libfastx.a
+libtool: link: gcc -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastx_artifacts_filter fastx_artifacts_filter.o ../libfastx/libfastx.a
+make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastx_artifacts_filter'
Making all in fastx_reverse_complement
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_reverse_complement'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_reverse_complement.c
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-libtool: link: gcc -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastx_reverse_complement fastx_reverse_complement.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_reverse_complement'
+make[4]: Entering directory `/«PKGBUILDDIR»/src/fastx_reverse_complement'
+gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_reverse_complement.c
+/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastx_reverse_complement fastx_reverse_complement.o ../libfastx/libfastx.a
+libtool: link: gcc -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastx_reverse_complement fastx_reverse_complement.o ../libfastx/libfastx.a
+make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastx_reverse_complement'
Making all in fastx_collapser
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_collapser'
-g++ -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o fastx_collapser.o fastx_collapser.cpp
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-libtool: link: g++ -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -o fastx_collapser fastx_collapser.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_collapser'
+make[4]: Entering directory `/«PKGBUILDDIR»/src/fastx_collapser'
+g++ -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o fastx_collapser.o fastx_collapser.cpp
+/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -o fastx_collapser fastx_collapser.o ../libfastx/libfastx.a
+libtool: link: g++ -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -o fastx_collapser fastx_collapser.o ../libfastx/libfastx.a
+make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastx_collapser'
Making all in fastx_uncollapser
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-g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/include/gtextutils -I../libfastx -I../libfastx -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o fastx_uncollapser.o fastx_uncollapser.cpp
-/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -o fastx_uncollapser fastx_uncollapser.o -lgtextutils ../libfastx/libfastx.a
-libtool: link: g++ -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -o fastx_uncollapser fastx_uncollapser.o -lgtextutils ../libfastx/libfastx.a
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_uncollapser'
+make[4]: Entering directory `/«PKGBUILDDIR»/src/fastx_uncollapser'
+g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/include/gtextutils -I../libfastx -I../libfastx -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o fastx_uncollapser.o fastx_uncollapser.cpp
+/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -o fastx_uncollapser fastx_uncollapser.o -lgtextutils ../libfastx/libfastx.a
+libtool: link: g++ -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -o fastx_uncollapser fastx_uncollapser.o -lgtextutils ../libfastx/libfastx.a
+make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastx_uncollapser'
Making all in seqalign_test
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/seqalign_test'
-g++ -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o seqalign_test.o seqalign_test.cpp
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-libtool: link: g++ -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -o seqalign_test seqalign_test.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/seqalign_test'
+make[4]: Entering directory `/«PKGBUILDDIR»/src/seqalign_test'
+g++ -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o seqalign_test.o seqalign_test.cpp
+/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -o seqalign_test seqalign_test.o ../libfastx/libfastx.a
+libtool: link: g++ -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -o seqalign_test seqalign_test.o ../libfastx/libfastx.a
+make[4]: Leaving directory `/«PKGBUILDDIR»/src/seqalign_test'
Making all in fasta_formatter
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fasta_formatter'
-g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/include/gtextutils -I../libfastx -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o fasta_formatter.o fasta_formatter.cpp
-/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -o fasta_formatter fasta_formatter.o -lgtextutils ../libfastx/libfastx.a
-libtool: link: g++ -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -o fasta_formatter fasta_formatter.o -lgtextutils ../libfastx/libfastx.a
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fasta_formatter'
+make[4]: Entering directory `/«PKGBUILDDIR»/src/fasta_formatter'
+g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/include/gtextutils -I../libfastx -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o fasta_formatter.o fasta_formatter.cpp
+/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -o fasta_formatter fasta_formatter.o -lgtextutils ../libfastx/libfastx.a
+libtool: link: g++ -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -o fasta_formatter fasta_formatter.o -lgtextutils ../libfastx/libfastx.a
+make[4]: Leaving directory `/«PKGBUILDDIR»/src/fasta_formatter'
Making all in fasta_nucleotide_changer
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fasta_nucleotide_changer'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fasta_nucleotide_changer.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fasta_nucleotide_changer fasta_nucleotide_changer.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fasta_nucleotide_changer fasta_nucleotide_changer.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fasta_nucleotide_changer'
+make[4]: Entering directory `/«PKGBUILDDIR»/src/fasta_nucleotide_changer'
+gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fasta_nucleotide_changer.c
+/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fasta_nucleotide_changer fasta_nucleotide_changer.o ../libfastx/libfastx.a
+libtool: link: gcc -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fasta_nucleotide_changer fasta_nucleotide_changer.o ../libfastx/libfastx.a
+make[4]: Leaving directory `/«PKGBUILDDIR»/src/fasta_nucleotide_changer'
Making all in fastx_renamer
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_renamer'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_renamer.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastx_renamer fastx_renamer.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastx_renamer fastx_renamer.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_renamer'
+make[4]: Entering directory `/«PKGBUILDDIR»/src/fastx_renamer'
+gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_renamer.c
+/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastx_renamer fastx_renamer.o ../libfastx/libfastx.a
+libtool: link: gcc -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastx_renamer fastx_renamer.o ../libfastx/libfastx.a
+make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastx_renamer'
Making all in fastq_masker
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastq_masker'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_masker.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastq_masker fastq_masker.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastq_masker fastq_masker.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastq_masker'
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src'
+make[4]: Entering directory `/«PKGBUILDDIR»/src/fastq_masker'
+gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_masker.c
+/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastq_masker fastq_masker.o ../libfastx/libfastx.a
+libtool: link: gcc -g -O2 -g -O2 -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastq_masker fastq_masker.o ../libfastx/libfastx.a
+make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastq_masker'
+make[4]: Entering directory `/«PKGBUILDDIR»/src'
make[4]: Nothing to be done for `all-am'.
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src'
-make[3]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src'
+make[4]: Leaving directory `/«PKGBUILDDIR»/src'
+make[3]: Leaving directory `/«PKGBUILDDIR»/src'
Making all in doc
-make[3]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/doc'
+make[3]: Entering directory `/«PKGBUILDDIR»/doc'
make[3]: Nothing to be done for `all'.
-make[3]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/doc'
+make[3]: Leaving directory `/«PKGBUILDDIR»/doc'
Making all in galaxy
-make[3]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy'
+make[3]: Entering directory `/«PKGBUILDDIR»/galaxy'
Making all in tools
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/tools'
+make[4]: Entering directory `/«PKGBUILDDIR»/galaxy/tools'
Making all in fastx_toolkit
-make[5]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/tools/fastx_toolkit'
+make[5]: Entering directory `/«PKGBUILDDIR»/galaxy/tools/fastx_toolkit'
make[5]: Nothing to be done for `all'.
-make[5]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/tools/fastx_toolkit'
+make[5]: Leaving directory `/«PKGBUILDDIR»/galaxy/tools/fastx_toolkit'
Making all in cshl_custom_fastx_toolkit
-make[5]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/tools/cshl_custom_fastx_toolkit'
+make[5]: Entering directory `/«PKGBUILDDIR»/galaxy/tools/cshl_custom_fastx_toolkit'
make[5]: Nothing to be done for `all'.
-make[5]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/tools/cshl_custom_fastx_toolkit'
-make[5]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/tools'
+make[5]: Leaving directory `/«PKGBUILDDIR»/galaxy/tools/cshl_custom_fastx_toolkit'
+make[5]: Entering directory `/«PKGBUILDDIR»/galaxy/tools'
make[5]: Nothing to be done for `all-am'.
-make[5]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/tools'
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/tools'
+make[5]: Leaving directory `/«PKGBUILDDIR»/galaxy/tools'
+make[4]: Leaving directory `/«PKGBUILDDIR»/galaxy/tools'
Making all in test-data
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/test-data'
+make[4]: Entering directory `/«PKGBUILDDIR»/galaxy/test-data'
make[4]: Nothing to be done for `all'.
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/test-data'
+make[4]: Leaving directory `/«PKGBUILDDIR»/galaxy/test-data'
Making all in static
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/static'
+make[4]: Entering directory `/«PKGBUILDDIR»/galaxy/static'
Making all in fastx_icons
-make[5]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/static/fastx_icons'
+make[5]: Entering directory `/«PKGBUILDDIR»/galaxy/static/fastx_icons'
make[5]: Nothing to be done for `all'.
-make[5]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/static/fastx_icons'
-make[5]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/static'
+make[5]: Leaving directory `/«PKGBUILDDIR»/galaxy/static/fastx_icons'
+make[5]: Entering directory `/«PKGBUILDDIR»/galaxy/static'
make[5]: Nothing to be done for `all-am'.
-make[5]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/static'
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/static'
+make[5]: Leaving directory `/«PKGBUILDDIR»/galaxy/static'
+make[4]: Leaving directory `/«PKGBUILDDIR»/galaxy/static'
Making all in tool-data
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/tool-data'
+make[4]: Entering directory `/«PKGBUILDDIR»/galaxy/tool-data'
make[4]: Nothing to be done for `all'.
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/tool-data'
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy'
+make[4]: Leaving directory `/«PKGBUILDDIR»/galaxy/tool-data'
+make[4]: Entering directory `/«PKGBUILDDIR»/galaxy'
make[4]: Nothing to be done for `all-am'.
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy'
-make[3]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy'
+make[4]: Leaving directory `/«PKGBUILDDIR»/galaxy'
+make[3]: Leaving directory `/«PKGBUILDDIR»/galaxy'
Making all in scripts
-make[3]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/scripts'
+make[3]: Entering directory `/«PKGBUILDDIR»/scripts'
make[3]: Nothing to be done for `all'.
-make[3]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/scripts'
+make[3]: Leaving directory `/«PKGBUILDDIR»/scripts'
Making all in build_scripts
-make[3]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/build_scripts'
+make[3]: Entering directory `/«PKGBUILDDIR»/build_scripts'
make[3]: Nothing to be done for `all'.
-make[3]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/build_scripts'
-make[3]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13'
-make[3]: Nothing to be done for `all-am'.
-make[3]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13'
-make[2]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13'
-make[1]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13'
+make[3]: Leaving directory `/«PKGBUILDDIR»/build_scripts'
+make[3]: Entering directory `/«PKGBUILDDIR»'
+make[3]: Leaving directory `/«PKGBUILDDIR»'
+make[2]: Leaving directory `/«PKGBUILDDIR»'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
touch debian/stamp-makefile-build
DEB_MAKE_CHECK_TARGET unset, not running checks
fakeroot debian/rules binary
@@ -591,274 +596,274 @@ if test -e /usr/share/misc/config.sub ; then \
done ; \
fi
DEB_MAKE_CHECK_TARGET unset, not running checks
-/usr/bin/make -C . install DESTDIR=/«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit/
-make[1]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13'
+/usr/bin/make -C . install DESTDIR=/«PKGBUILDDIR»/debian/fastx-toolkit/
+make[1]: Entering directory `/«PKGBUILDDIR»'
Making install in m4
-make[2]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/m4'
-make[3]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/m4'
+make[2]: Entering directory `/«PKGBUILDDIR»/m4'
+make[3]: Entering directory `/«PKGBUILDDIR»/m4'
make[3]: Nothing to be done for `install-exec-am'.
-test -z "/usr/share/aclocal" || /bin/mkdir -p "/«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/share/aclocal"
- /usr/bin/install -c -m 644 'ax_c_long_long.m4' '/«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/share/aclocal/ax_c_long_long.m4'
- /usr/bin/install -c -m 644 'ax_cxx_header_stdcxx_tr1.m4' '/«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/share/aclocal/ax_cxx_header_stdcxx_tr1.m4'
-make[3]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/m4'
-make[2]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/m4'
+test -z "/usr/share/aclocal" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/fastx-toolkit//usr/share/aclocal"
+ /usr/bin/install -c -m 644 'ax_c_long_long.m4' '/«PKGBUILDDIR»/debian/fastx-toolkit//usr/share/aclocal/ax_c_long_long.m4'
+ /usr/bin/install -c -m 644 'ax_cxx_header_stdcxx_tr1.m4' '/«PKGBUILDDIR»/debian/fastx-toolkit//usr/share/aclocal/ax_cxx_header_stdcxx_tr1.m4'
+make[3]: Leaving directory `/«PKGBUILDDIR»/m4'
+make[2]: Leaving directory `/«PKGBUILDDIR»/m4'
Making install in src
-make[2]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src'
+make[2]: Entering directory `/«PKGBUILDDIR»/src'
Making install in libfastx
-make[3]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/libfastx'
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/libfastx'
+make[3]: Entering directory `/«PKGBUILDDIR»/src/libfastx'
+make[4]: Entering directory `/«PKGBUILDDIR»/src/libfastx'
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/libfastx'
-make[3]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/libfastx'
+make[4]: Leaving directory `/«PKGBUILDDIR»/src/libfastx'
+make[3]: Leaving directory `/«PKGBUILDDIR»/src/libfastx'
Making install in fastx_clipper
-make[3]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_clipper'
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_clipper'
-test -z "/usr/bin" || /bin/mkdir -p "/«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fastx_clipper' '/«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin/fastx_clipper'
-libtool: install: /usr/bin/install -c fastx_clipper /«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin/fastx_clipper
+make[3]: Entering directory `/«PKGBUILDDIR»/src/fastx_clipper'
+make[4]: Entering directory `/«PKGBUILDDIR»/src/fastx_clipper'
+test -z "/usr/bin" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin"
+ /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fastx_clipper' '/«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin/fastx_clipper'
+libtool: install: /usr/bin/install -c fastx_clipper /«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin/fastx_clipper
make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_clipper'
-make[3]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_clipper'
+make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastx_clipper'
+make[3]: Leaving directory `/«PKGBUILDDIR»/src/fastx_clipper'
Making install in fastx_trimmer
-make[3]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_trimmer'
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_trimmer'
-test -z "/usr/bin" || /bin/mkdir -p "/«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fastx_trimmer' '/«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin/fastx_trimmer'
-libtool: install: /usr/bin/install -c fastx_trimmer /«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin/fastx_trimmer
+make[3]: Entering directory `/«PKGBUILDDIR»/src/fastx_trimmer'
+make[4]: Entering directory `/«PKGBUILDDIR»/src/fastx_trimmer'
+test -z "/usr/bin" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin"
+ /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fastx_trimmer' '/«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin/fastx_trimmer'
+libtool: install: /usr/bin/install -c fastx_trimmer /«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin/fastx_trimmer
make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_trimmer'
-make[3]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_trimmer'
+make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastx_trimmer'
+make[3]: Leaving directory `/«PKGBUILDDIR»/src/fastx_trimmer'
Making install in fastx_quality_stats
-make[3]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_quality_stats'
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_quality_stats'
-test -z "/usr/bin" || /bin/mkdir -p "/«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fastx_quality_stats' '/«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin/fastx_quality_stats'
-libtool: install: /usr/bin/install -c fastx_quality_stats /«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin/fastx_quality_stats
+make[3]: Entering directory `/«PKGBUILDDIR»/src/fastx_quality_stats'
+make[4]: Entering directory `/«PKGBUILDDIR»/src/fastx_quality_stats'
+test -z "/usr/bin" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin"
+ /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fastx_quality_stats' '/«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin/fastx_quality_stats'
+libtool: install: /usr/bin/install -c fastx_quality_stats /«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin/fastx_quality_stats
make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_quality_stats'
-make[3]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_quality_stats'
+make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastx_quality_stats'
+make[3]: Leaving directory `/«PKGBUILDDIR»/src/fastx_quality_stats'
Making install in fastq_quality_converter
-make[3]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastq_quality_converter'
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastq_quality_converter'
-test -z "/usr/bin" || /bin/mkdir -p "/«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fastq_quality_converter' '/«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin/fastq_quality_converter'
-libtool: install: /usr/bin/install -c fastq_quality_converter /«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin/fastq_quality_converter
+make[3]: Entering directory `/«PKGBUILDDIR»/src/fastq_quality_converter'
+make[4]: Entering directory `/«PKGBUILDDIR»/src/fastq_quality_converter'
+test -z "/usr/bin" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin"
+ /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fastq_quality_converter' '/«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin/fastq_quality_converter'
+libtool: install: /usr/bin/install -c fastq_quality_converter /«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin/fastq_quality_converter
make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastq_quality_converter'
-make[3]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastq_quality_converter'
+make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastq_quality_converter'
+make[3]: Leaving directory `/«PKGBUILDDIR»/src/fastq_quality_converter'
Making install in fastq_to_fasta
-make[3]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastq_to_fasta'
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastq_to_fasta'
-test -z "/usr/bin" || /bin/mkdir -p "/«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fastq_to_fasta' '/«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin/fastq_to_fasta'
-libtool: install: /usr/bin/install -c fastq_to_fasta /«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin/fastq_to_fasta
+make[3]: Entering directory `/«PKGBUILDDIR»/src/fastq_to_fasta'
+make[4]: Entering directory `/«PKGBUILDDIR»/src/fastq_to_fasta'
+test -z "/usr/bin" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin"
+ /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fastq_to_fasta' '/«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin/fastq_to_fasta'
+libtool: install: /usr/bin/install -c fastq_to_fasta /«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin/fastq_to_fasta
make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastq_to_fasta'
-make[3]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastq_to_fasta'
+make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastq_to_fasta'
+make[3]: Leaving directory `/«PKGBUILDDIR»/src/fastq_to_fasta'
Making install in fastq_quality_filter
-make[3]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastq_quality_filter'
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastq_quality_filter'
-test -z "/usr/bin" || /bin/mkdir -p "/«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fastq_quality_filter' '/«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin/fastq_quality_filter'
-libtool: install: /usr/bin/install -c fastq_quality_filter /«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin/fastq_quality_filter
+make[3]: Entering directory `/«PKGBUILDDIR»/src/fastq_quality_filter'
+make[4]: Entering directory `/«PKGBUILDDIR»/src/fastq_quality_filter'
+test -z "/usr/bin" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin"
+ /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fastq_quality_filter' '/«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin/fastq_quality_filter'
+libtool: install: /usr/bin/install -c fastq_quality_filter /«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin/fastq_quality_filter
make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastq_quality_filter'
-make[3]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastq_quality_filter'
+make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastq_quality_filter'
+make[3]: Leaving directory `/«PKGBUILDDIR»/src/fastq_quality_filter'
Making install in fastq_quality_trimmer
-make[3]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastq_quality_trimmer'
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastq_quality_trimmer'
-test -z "/usr/bin" || /bin/mkdir -p "/«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fastq_quality_trimmer' '/«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin/fastq_quality_trimmer'
-libtool: install: /usr/bin/install -c fastq_quality_trimmer /«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin/fastq_quality_trimmer
+make[3]: Entering directory `/«PKGBUILDDIR»/src/fastq_quality_trimmer'
+make[4]: Entering directory `/«PKGBUILDDIR»/src/fastq_quality_trimmer'
+test -z "/usr/bin" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin"
+ /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fastq_quality_trimmer' '/«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin/fastq_quality_trimmer'
+libtool: install: /usr/bin/install -c fastq_quality_trimmer /«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin/fastq_quality_trimmer
make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastq_quality_trimmer'
-make[3]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastq_quality_trimmer'
+make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastq_quality_trimmer'
+make[3]: Leaving directory `/«PKGBUILDDIR»/src/fastq_quality_trimmer'
Making install in fastx_artifacts_filter
-make[3]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_artifacts_filter'
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_artifacts_filter'
-test -z "/usr/bin" || /bin/mkdir -p "/«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fastx_artifacts_filter' '/«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin/fastx_artifacts_filter'
-libtool: install: /usr/bin/install -c fastx_artifacts_filter /«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin/fastx_artifacts_filter
+make[3]: Entering directory `/«PKGBUILDDIR»/src/fastx_artifacts_filter'
+make[4]: Entering directory `/«PKGBUILDDIR»/src/fastx_artifacts_filter'
+test -z "/usr/bin" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin"
+ /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fastx_artifacts_filter' '/«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin/fastx_artifacts_filter'
+libtool: install: /usr/bin/install -c fastx_artifacts_filter /«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin/fastx_artifacts_filter
make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_artifacts_filter'
-make[3]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_artifacts_filter'
+make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastx_artifacts_filter'
+make[3]: Leaving directory `/«PKGBUILDDIR»/src/fastx_artifacts_filter'
Making install in fastx_reverse_complement
-make[3]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_reverse_complement'
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_reverse_complement'
-test -z "/usr/bin" || /bin/mkdir -p "/«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fastx_reverse_complement' '/«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin/fastx_reverse_complement'
-libtool: install: /usr/bin/install -c fastx_reverse_complement /«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin/fastx_reverse_complement
+make[3]: Entering directory `/«PKGBUILDDIR»/src/fastx_reverse_complement'
+make[4]: Entering directory `/«PKGBUILDDIR»/src/fastx_reverse_complement'
+test -z "/usr/bin" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin"
+ /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fastx_reverse_complement' '/«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin/fastx_reverse_complement'
+libtool: install: /usr/bin/install -c fastx_reverse_complement /«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin/fastx_reverse_complement
make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_reverse_complement'
-make[3]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_reverse_complement'
+make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastx_reverse_complement'
+make[3]: Leaving directory `/«PKGBUILDDIR»/src/fastx_reverse_complement'
Making install in fastx_collapser
-make[3]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_collapser'
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_collapser'
-test -z "/usr/bin" || /bin/mkdir -p "/«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fastx_collapser' '/«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin/fastx_collapser'
-libtool: install: /usr/bin/install -c fastx_collapser /«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin/fastx_collapser
+make[3]: Entering directory `/«PKGBUILDDIR»/src/fastx_collapser'
+make[4]: Entering directory `/«PKGBUILDDIR»/src/fastx_collapser'
+test -z "/usr/bin" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin"
+ /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fastx_collapser' '/«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin/fastx_collapser'
+libtool: install: /usr/bin/install -c fastx_collapser /«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin/fastx_collapser
make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_collapser'
-make[3]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_collapser'
+make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastx_collapser'
+make[3]: Leaving directory `/«PKGBUILDDIR»/src/fastx_collapser'
Making install in fastx_uncollapser
-make[3]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_uncollapser'
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_uncollapser'
-test -z "/usr/bin" || /bin/mkdir -p "/«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fastx_uncollapser' '/«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin/fastx_uncollapser'
-libtool: install: /usr/bin/install -c fastx_uncollapser /«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin/fastx_uncollapser
+make[3]: Entering directory `/«PKGBUILDDIR»/src/fastx_uncollapser'
+make[4]: Entering directory `/«PKGBUILDDIR»/src/fastx_uncollapser'
+test -z "/usr/bin" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin"
+ /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fastx_uncollapser' '/«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin/fastx_uncollapser'
+libtool: install: /usr/bin/install -c fastx_uncollapser /«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin/fastx_uncollapser
make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_uncollapser'
-make[3]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_uncollapser'
+make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastx_uncollapser'
+make[3]: Leaving directory `/«PKGBUILDDIR»/src/fastx_uncollapser'
Making install in seqalign_test
-make[3]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/seqalign_test'
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/seqalign_test'
+make[3]: Entering directory `/«PKGBUILDDIR»/src/seqalign_test'
+make[4]: Entering directory `/«PKGBUILDDIR»/src/seqalign_test'
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/seqalign_test'
-make[3]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/seqalign_test'
+make[4]: Leaving directory `/«PKGBUILDDIR»/src/seqalign_test'
+make[3]: Leaving directory `/«PKGBUILDDIR»/src/seqalign_test'
Making install in fasta_formatter
-make[3]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fasta_formatter'
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fasta_formatter'
-test -z "/usr/bin" || /bin/mkdir -p "/«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fasta_formatter' '/«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin/fasta_formatter'
-libtool: install: /usr/bin/install -c fasta_formatter /«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin/fasta_formatter
+make[3]: Entering directory `/«PKGBUILDDIR»/src/fasta_formatter'
+make[4]: Entering directory `/«PKGBUILDDIR»/src/fasta_formatter'
+test -z "/usr/bin" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin"
+ /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fasta_formatter' '/«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin/fasta_formatter'
+libtool: install: /usr/bin/install -c fasta_formatter /«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin/fasta_formatter
make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fasta_formatter'
-make[3]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fasta_formatter'
+make[4]: Leaving directory `/«PKGBUILDDIR»/src/fasta_formatter'
+make[3]: Leaving directory `/«PKGBUILDDIR»/src/fasta_formatter'
Making install in fasta_nucleotide_changer
-make[3]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fasta_nucleotide_changer'
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fasta_nucleotide_changer'
-test -z "/usr/bin" || /bin/mkdir -p "/«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fasta_nucleotide_changer' '/«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin/fasta_nucleotide_changer'
-libtool: install: /usr/bin/install -c fasta_nucleotide_changer /«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin/fasta_nucleotide_changer
+make[3]: Entering directory `/«PKGBUILDDIR»/src/fasta_nucleotide_changer'
+make[4]: Entering directory `/«PKGBUILDDIR»/src/fasta_nucleotide_changer'
+test -z "/usr/bin" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin"
+ /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fasta_nucleotide_changer' '/«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin/fasta_nucleotide_changer'
+libtool: install: /usr/bin/install -c fasta_nucleotide_changer /«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin/fasta_nucleotide_changer
make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fasta_nucleotide_changer'
-make[3]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fasta_nucleotide_changer'
+make[4]: Leaving directory `/«PKGBUILDDIR»/src/fasta_nucleotide_changer'
+make[3]: Leaving directory `/«PKGBUILDDIR»/src/fasta_nucleotide_changer'
Making install in fastx_renamer
-make[3]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_renamer'
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_renamer'
-test -z "/usr/bin" || /bin/mkdir -p "/«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fastx_renamer' '/«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin/fastx_renamer'
-libtool: install: /usr/bin/install -c fastx_renamer /«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin/fastx_renamer
+make[3]: Entering directory `/«PKGBUILDDIR»/src/fastx_renamer'
+make[4]: Entering directory `/«PKGBUILDDIR»/src/fastx_renamer'
+test -z "/usr/bin" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin"
+ /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fastx_renamer' '/«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin/fastx_renamer'
+libtool: install: /usr/bin/install -c fastx_renamer /«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin/fastx_renamer
make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_renamer'
-make[3]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastx_renamer'
+make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastx_renamer'
+make[3]: Leaving directory `/«PKGBUILDDIR»/src/fastx_renamer'
Making install in fastq_masker
-make[3]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastq_masker'
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastq_masker'
-test -z "/usr/bin" || /bin/mkdir -p "/«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fastq_masker' '/«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin/fastq_masker'
-libtool: install: /usr/bin/install -c fastq_masker /«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin/fastq_masker
+make[3]: Entering directory `/«PKGBUILDDIR»/src/fastq_masker'
+make[4]: Entering directory `/«PKGBUILDDIR»/src/fastq_masker'
+test -z "/usr/bin" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin"
+ /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fastq_masker' '/«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin/fastq_masker'
+libtool: install: /usr/bin/install -c fastq_masker /«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin/fastq_masker
make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastq_masker'
-make[3]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src/fastq_masker'
-make[3]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src'
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src'
+make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastq_masker'
+make[3]: Leaving directory `/«PKGBUILDDIR»/src/fastq_masker'
+make[3]: Entering directory `/«PKGBUILDDIR»/src'
+make[4]: Entering directory `/«PKGBUILDDIR»/src'
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src'
-make[3]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src'
-make[2]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/src'
+make[4]: Leaving directory `/«PKGBUILDDIR»/src'
+make[3]: Leaving directory `/«PKGBUILDDIR»/src'
+make[2]: Leaving directory `/«PKGBUILDDIR»/src'
Making install in doc
-make[2]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/doc'
-make[3]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/doc'
+make[2]: Entering directory `/«PKGBUILDDIR»/doc'
+make[3]: Entering directory `/«PKGBUILDDIR»/doc'
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/doc'
-make[2]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/doc'
+make[3]: Leaving directory `/«PKGBUILDDIR»/doc'
+make[2]: Leaving directory `/«PKGBUILDDIR»/doc'
Making install in galaxy
-make[2]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy'
+make[2]: Entering directory `/«PKGBUILDDIR»/galaxy'
Making install in tools
-make[3]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/tools'
+make[3]: Entering directory `/«PKGBUILDDIR»/galaxy/tools'
Making install in fastx_toolkit
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/tools/fastx_toolkit'
-make[5]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/tools/fastx_toolkit'
+make[4]: Entering directory `/«PKGBUILDDIR»/galaxy/tools/fastx_toolkit'
+make[5]: Entering directory `/«PKGBUILDDIR»/galaxy/tools/fastx_toolkit'
make[5]: Nothing to be done for `install-exec-am'.
make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/tools/fastx_toolkit'
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/tools/fastx_toolkit'
+make[5]: Leaving directory `/«PKGBUILDDIR»/galaxy/tools/fastx_toolkit'
+make[4]: Leaving directory `/«PKGBUILDDIR»/galaxy/tools/fastx_toolkit'
Making install in cshl_custom_fastx_toolkit
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/tools/cshl_custom_fastx_toolkit'
-make[5]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/tools/cshl_custom_fastx_toolkit'
+make[4]: Entering directory `/«PKGBUILDDIR»/galaxy/tools/cshl_custom_fastx_toolkit'
+make[5]: Entering directory `/«PKGBUILDDIR»/galaxy/tools/cshl_custom_fastx_toolkit'
make[5]: Nothing to be done for `install-exec-am'.
make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/tools'
-make[5]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/tools'
+make[5]: Leaving directory `/«PKGBUILDDIR»/galaxy/tools/cshl_custom_fastx_toolkit'
+make[4]: Leaving directory `/«PKGBUILDDIR»/galaxy/tools/cshl_custom_fastx_toolkit'
+make[4]: Entering directory `/«PKGBUILDDIR»/galaxy/tools'
+make[5]: Entering directory `/«PKGBUILDDIR»/galaxy/tools'
make[5]: Nothing to be done for `install-exec-am'.
make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/tools'
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/tools'
-make[3]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/tools'
+make[5]: Leaving directory `/«PKGBUILDDIR»/galaxy/tools'
+make[4]: Leaving directory `/«PKGBUILDDIR»/galaxy/tools'
+make[3]: Leaving directory `/«PKGBUILDDIR»/galaxy/tools'
Making install in test-data
-make[3]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/test-data'
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/test-data'
+make[3]: Entering directory `/«PKGBUILDDIR»/galaxy/test-data'
+make[4]: Entering directory `/«PKGBUILDDIR»/galaxy/test-data'
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/test-data'
-make[3]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/test-data'
+make[4]: Leaving directory `/«PKGBUILDDIR»/galaxy/test-data'
+make[3]: Leaving directory `/«PKGBUILDDIR»/galaxy/test-data'
Making install in static
-make[3]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/static'
+make[3]: Entering directory `/«PKGBUILDDIR»/galaxy/static'
Making install in fastx_icons
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/static/fastx_icons'
-make[5]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/static/fastx_icons'
+make[4]: Entering directory `/«PKGBUILDDIR»/galaxy/static/fastx_icons'
+make[5]: Entering directory `/«PKGBUILDDIR»/galaxy/static/fastx_icons'
make[5]: Nothing to be done for `install-exec-am'.
make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/static/fastx_icons'
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/static/fastx_icons'
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/static'
-make[5]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/static'
+make[5]: Leaving directory `/«PKGBUILDDIR»/galaxy/static/fastx_icons'
+make[4]: Leaving directory `/«PKGBUILDDIR»/galaxy/static/fastx_icons'
+make[4]: Entering directory `/«PKGBUILDDIR»/galaxy/static'
+make[5]: Entering directory `/«PKGBUILDDIR»/galaxy/static'
make[5]: Nothing to be done for `install-exec-am'.
make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/static'
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/static'
-make[3]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/static'
+make[5]: Leaving directory `/«PKGBUILDDIR»/galaxy/static'
+make[4]: Leaving directory `/«PKGBUILDDIR»/galaxy/static'
+make[3]: Leaving directory `/«PKGBUILDDIR»/galaxy/static'
Making install in tool-data
-make[3]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/tool-data'
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/tool-data'
+make[3]: Entering directory `/«PKGBUILDDIR»/galaxy/tool-data'
+make[4]: Entering directory `/«PKGBUILDDIR»/galaxy/tool-data'
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/tool-data'
-make[3]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy/tool-data'
-make[3]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy'
-make[4]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy'
+make[4]: Leaving directory `/«PKGBUILDDIR»/galaxy/tool-data'
+make[3]: Leaving directory `/«PKGBUILDDIR»/galaxy/tool-data'
+make[3]: Entering directory `/«PKGBUILDDIR»/galaxy'
+make[4]: Entering directory `/«PKGBUILDDIR»/galaxy'
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy'
-make[3]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy'
-make[2]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/galaxy'
+make[4]: Leaving directory `/«PKGBUILDDIR»/galaxy'
+make[3]: Leaving directory `/«PKGBUILDDIR»/galaxy'
+make[2]: Leaving directory `/«PKGBUILDDIR»/galaxy'
Making install in scripts
-make[2]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/scripts'
-make[3]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/scripts'
-test -z "/usr/bin" || /bin/mkdir -p "/«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin"
- /usr/bin/install -c 'fastx_barcode_splitter.pl' '/«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin/fastx_barcode_splitter.pl'
- /usr/bin/install -c 'fastx_nucleotide_distribution_graph.sh' '/«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin/fastx_nucleotide_distribution_graph.sh'
- /usr/bin/install -c 'fastx_nucleotide_distribution_line_graph.sh' '/«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin/fastx_nucleotide_distribution_line_graph.sh'
- /usr/bin/install -c 'fastq_quality_boxplot_graph.sh' '/«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin/fastq_quality_boxplot_graph.sh'
- /usr/bin/install -c 'fasta_clipping_histogram.pl' '/«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit//usr/bin/fasta_clipping_histogram.pl'
+make[2]: Entering directory `/«PKGBUILDDIR»/scripts'
+make[3]: Entering directory `/«PKGBUILDDIR»/scripts'
+test -z "/usr/bin" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin"
+ /usr/bin/install -c 'fastx_barcode_splitter.pl' '/«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin/fastx_barcode_splitter.pl'
+ /usr/bin/install -c 'fastx_nucleotide_distribution_graph.sh' '/«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin/fastx_nucleotide_distribution_graph.sh'
+ /usr/bin/install -c 'fastx_nucleotide_distribution_line_graph.sh' '/«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin/fastx_nucleotide_distribution_line_graph.sh'
+ /usr/bin/install -c 'fastq_quality_boxplot_graph.sh' '/«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin/fastq_quality_boxplot_graph.sh'
+ /usr/bin/install -c 'fasta_clipping_histogram.pl' '/«PKGBUILDDIR»/debian/fastx-toolkit//usr/bin/fasta_clipping_histogram.pl'
make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/scripts'
-make[2]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/scripts'
+make[3]: Leaving directory `/«PKGBUILDDIR»/scripts'
+make[2]: Leaving directory `/«PKGBUILDDIR»/scripts'
Making install in build_scripts
-make[2]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/build_scripts'
-make[3]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13/build_scripts'
+make[2]: Entering directory `/«PKGBUILDDIR»/build_scripts'
+make[3]: Entering directory `/«PKGBUILDDIR»/build_scripts'
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/build_scripts'
-make[2]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13/build_scripts'
-make[2]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13'
-make[3]: Entering directory `/«BUILDDIR»/fastx-toolkit-0.0.13'
+make[3]: Leaving directory `/«PKGBUILDDIR»/build_scripts'
+make[2]: Leaving directory `/«PKGBUILDDIR»/build_scripts'
+make[2]: Entering directory `/«PKGBUILDDIR»'
+make[3]: Entering directory `/«PKGBUILDDIR»'
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13'
-make[2]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13'
-make[1]: Leaving directory `/«BUILDDIR»/fastx-toolkit-0.0.13'
+make[3]: Leaving directory `/«PKGBUILDDIR»'
+make[2]: Leaving directory `/«PKGBUILDDIR»'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
touch debian/stamp-makefile-install
Adding cdbs dependencies to debian/fastx-toolkit.substvars
dh_installdirs -pfastx-toolkit
-rm --recursive /«BUILDDIR»/fastx-toolkit-0.0.13/debian/fastx-toolkit/usr/share/aclocal
+rm --recursive /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/aclocal
dh_installdocs -pfastx-toolkit ./README ./NEWS ./AUTHORS ./THANKS
dh_installexamples -pfastx-toolkit
dh_installman -pfastx-toolkit
@@ -879,6 +884,7 @@ dh_bugfiles -pfastx-toolkit
dh_install -pfastx-toolkit
dh_link -pfastx-toolkit
dh_installmime -pfastx-toolkit
+dh_installgsettings -pfastx-toolkit
dh_strip -pfastx-toolkit
dh_compress -pfastx-toolkit
dh_fixperms -pfastx-toolkit
@@ -890,13 +896,13 @@ dh_gencontrol -pfastx-toolkit
dpkg-gencontrol: warning: package fastx-toolkit: unused substitution variable ${perl:Depends}
dh_md5sums -pfastx-toolkit
dh_builddeb -pfastx-toolkit
-dpkg-deb: building package `fastx-toolkit' in `../fastx-toolkit_0.0.13-1_amd64.deb'.
- dpkg-genchanges >../fastx-toolkit_0.0.13-1_amd64.changes
+dpkg-deb: building package `fastx-toolkit' in `../fastx-toolkit_0.0.13.1-1_amd64.deb'.
+ dpkg-genchanges >../fastx-toolkit_0.0.13.1-1_amd64.changes
dpkg-genchanges: including full source code in upload
- dpkg-source --after-build fastx-toolkit-0.0.13
+ dpkg-source --after-build fastx-toolkit-0.0.13.1
dpkg-buildpackage: full upload (original source is included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110414-1449
+Build finished at 20110708-1340
Finished
────────
@@ -908,60 +914,63 @@ I: Built successfully
└──────────────────────────────────────────────────────────────────────────────┘
-fastx-toolkit_0.0.13-1_amd64.changes:
-─────────────────────────────────────
+fastx-toolkit_0.0.13.1-1_amd64.changes:
+───────────────────────────────────────
Format: 1.8
-Date: Thu, 14 Apr 2011 14:00:57 +0900
+Date: Fri, 08 Jul 2011 13:11:37 +0900
Source: fastx-toolkit
Binary: fastx-toolkit
Architecture: source amd64
-Version: 0.0.13-1
+Version: 0.0.13.1-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
fastx-toolkit - FASTQ/A short nucleotide reads pre-processing tools
-Closes: 622700
+Closes: 626761
Changes:
- fastx-toolkit (0.0.13-1) unstable; urgency=low
+ fastx-toolkit (0.0.13.1-1) unstable; urgency=low
.
- * Initial release (Closes: #622700)
+ * New upstream release (Closes: #626761).
+ * Incremented Standards-Version to reflect conformance with Policy 3.9.2
+ (debian/control, no changes needed).
+ * Corrected Vcs-Git URL (debian/control).
Checksums-Sha1:
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- f2644723e6cf6022866c2a2ba6e84081b49068c3 14318 fastx-toolkit_0.0.13-1.debian.tar.gz
- c086244653f69e42242237a3eae761ae048bfbcd 110336 fastx-toolkit_0.0.13-1_amd64.deb
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Checksums-Sha256:
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- 5e1fa0efadd321644f7ff7af1732baa17408eb4ba0a839dcc44696ed1657e4d1 110336 fastx-toolkit_0.0.13-1_amd64.deb
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Files:
- ba6c78bf5de14c070c9188bddbeaa15b 1124 science optional fastx-toolkit_0.0.13-1.dsc
- 50b06d529087dd60a348902f91f55d0a 566587 science optional fastx-toolkit_0.0.13.orig.tar.bz2
- 0820662f676a79c9c76435f7193d1409 14318 science optional fastx-toolkit_0.0.13-1.debian.tar.gz
- 0ddb3e88ec52d5abdf81cd0c070b864e 110336 science optional fastx-toolkit_0.0.13-1_amd64.deb
+ 0755d68fa6b08246845cda9cb6ff8da7 1137 science optional fastx-toolkit_0.0.13.1-1.dsc
+ 3b0acec3aef0241d46f4c709d5714f09 1153417 science optional fastx-toolkit_0.0.13.1.orig.tar.bz2
+ 80c91bf5df6a27f66e7dd32d892daae3 14317 science optional fastx-toolkit_0.0.13.1-1.debian.tar.gz
+ 9369f98ae50fad5c455593636a08dcf3 107906 science optional fastx-toolkit_0.0.13.1-1_amd64.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-fastx-toolkit_0.0.13-1_amd64.deb
-────────────────────────────────
+fastx-toolkit_0.0.13.1-1_amd64.deb
+──────────────────────────────────
new debian package, version 2.0.
- size 110336 bytes: control archive= 1603 bytes.
- 1037 bytes, 19 lines control
+ size 107906 bytes: control archive= 1602 bytes.
+ 1041 bytes, 19 lines control
1798 bytes, 27 lines md5sums
Package: fastx-toolkit
- Version: 0.0.13-1
+ Version: 0.0.13.1-1
Architecture: amd64
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 444
- Depends: libc6 (>= 2.2.5), libgcc1 (>= 1:4.1.1), libgtextutils0 (>= 0.6), libstdc++6 (>= 4.5)
+ Installed-Size: 440
+ Depends: libc6 (>= 2.2.5), libgcc1 (>= 1:4.1.1), libgtextutils0 (>= 0.6.2), libstdc++6 (>= 4.6)
Section: science
Priority: optional
Homepage: http://hannonlab.cshl.edu/fastx_toolkit/
@@ -976,39 +985,39 @@ fastx-toolkit_0.0.13-1_amd64.deb
produce better mapping results. The FASTX-Toolkit tools perform some of these
preprocessing tasks.
-drwxr-xr-x root/root 0 2011-04-14 14:49 ./
-drwxr-xr-x root/root 0 2011-04-14 14:49 ./usr/
-drwxr-xr-x root/root 0 2011-04-14 14:49 ./usr/bin/
--rwxr-xr-x root/root 15416 2011-04-14 14:49 ./usr/bin/fastq_quality_trimmer
--rwxr-xr-x root/root 15160 2011-04-14 14:49 ./usr/bin/fastq_masker
--rwxr-xr-x root/root 2764 2011-04-14 14:49 ./usr/bin/fasta_clipping_histogram.pl
--rwxr-xr-x root/root 27904 2011-04-14 14:49 ./usr/bin/fastx_uncollapser
--rwxr-xr-x root/root 15048 2011-04-14 14:49 ./usr/bin/fastx_reverse_complement
--rwxr-xr-x root/root 15056 2011-04-14 14:49 ./usr/bin/fastq_to_fasta
--rwxr-xr-x root/root 5380 2011-04-14 14:49 ./usr/bin/fastq_quality_boxplot_graph.sh
--rwxr-xr-x root/root 5896 2011-04-14 14:49 ./usr/bin/fastx_nucleotide_distribution_graph.sh
--rwxr-xr-x root/root 15368 2011-04-14 14:49 ./usr/bin/fastq_quality_filter
--rwxr-xr-x root/root 14064 2011-04-14 14:49 ./usr/bin/fastq_quality_converter
--rwxr-xr-x root/root 15704 2011-04-14 14:49 ./usr/bin/fastx_trimmer
--rwxr-xr-x root/root 6069 2011-04-14 14:49 ./usr/bin/fastx_nucleotide_distribution_line_graph.sh
--rwxr-xr-x root/root 15040 2011-04-14 14:49 ./usr/bin/fastx_artifacts_filter
--rwxr-xr-x root/root 52480 2011-04-14 14:49 ./usr/bin/fastx_clipper
--rwxr-xr-x root/root 26192 2011-04-14 14:49 ./usr/bin/fastx_collapser
--rwxr-xr-x root/root 19384 2011-04-14 14:49 ./usr/bin/fasta_formatter
--rwxr-xr-x root/root 15040 2011-04-14 14:49 ./usr/bin/fasta_nucleotide_changer
--rwxr-xr-x root/root 15056 2011-04-14 14:49 ./usr/bin/fastx_renamer
--rwxr-xr-x root/root 19248 2011-04-14 14:49 ./usr/bin/fastx_quality_stats
--rwxr-xr-x root/root 13925 2011-04-14 14:49 ./usr/bin/fastx_barcode_splitter.pl
-drwxr-xr-x root/root 0 2011-04-14 14:49 ./usr/share/
-drwxr-xr-x root/root 0 2011-04-14 14:49 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-04-14 14:49 ./usr/share/doc/fastx-toolkit/
--rw-r--r-- root/root 425 2010-12-10 21:04 ./usr/share/doc/fastx-toolkit/changelog.gz
--rw-r--r-- root/root 425 2010-12-10 21:04 ./usr/share/doc/fastx-toolkit/NEWS.gz
--rw-r--r-- root/root 3728 2010-12-10 21:04 ./usr/share/doc/fastx-toolkit/README.gz
--rw-r--r-- root/root 121 2010-12-10 21:04 ./usr/share/doc/fastx-toolkit/AUTHORS
--rw-r--r-- root/root 372 2010-12-10 21:04 ./usr/share/doc/fastx-toolkit/THANKS
--rw-r--r-- root/root 37666 2011-04-13 20:55 ./usr/share/doc/fastx-toolkit/copyright
--rw-r--r-- root/root 159 2011-04-14 14:00 ./usr/share/doc/fastx-toolkit/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-07-08 13:40 ./
+drwxr-xr-x root/root 0 2011-07-08 13:40 ./usr/
+drwxr-xr-x root/root 0 2011-07-08 13:40 ./usr/bin/
+-rwxr-xr-x root/root 15392 2011-07-08 13:40 ./usr/bin/fastq_quality_trimmer
+-rwxr-xr-x root/root 15120 2011-07-08 13:40 ./usr/bin/fastq_masker
+-rwxr-xr-x root/root 2764 2011-07-08 13:40 ./usr/bin/fasta_clipping_histogram.pl
+-rwxr-xr-x root/root 27960 2011-07-08 13:40 ./usr/bin/fastx_uncollapser
+-rwxr-xr-x root/root 15048 2011-07-08 13:40 ./usr/bin/fastx_reverse_complement
+-rwxr-xr-x root/root 15056 2011-07-08 13:40 ./usr/bin/fastq_to_fasta
+-rwxr-xr-x root/root 5380 2011-07-08 13:40 ./usr/bin/fastq_quality_boxplot_graph.sh
+-rwxr-xr-x root/root 5896 2011-07-08 13:40 ./usr/bin/fastx_nucleotide_distribution_graph.sh
+-rwxr-xr-x root/root 15344 2011-07-08 13:40 ./usr/bin/fastq_quality_filter
+-rwxr-xr-x root/root 14032 2011-07-08 13:40 ./usr/bin/fastq_quality_converter
+-rwxr-xr-x root/root 15664 2011-07-08 13:40 ./usr/bin/fastx_trimmer
+-rwxr-xr-x root/root 6069 2011-07-08 13:40 ./usr/bin/fastx_nucleotide_distribution_line_graph.sh
+-rwxr-xr-x root/root 15040 2011-07-08 13:40 ./usr/bin/fastx_artifacts_filter
+-rwxr-xr-x root/root 52592 2011-07-08 13:40 ./usr/bin/fastx_clipper
+-rwxr-xr-x root/root 27816 2011-07-08 13:40 ./usr/bin/fastx_collapser
+-rwxr-xr-x root/root 15888 2011-07-08 13:40 ./usr/bin/fasta_formatter
+-rwxr-xr-x root/root 15040 2011-07-08 13:40 ./usr/bin/fasta_nucleotide_changer
+-rwxr-xr-x root/root 15056 2011-07-08 13:40 ./usr/bin/fastx_renamer
+-rwxr-xr-x root/root 19224 2011-07-08 13:40 ./usr/bin/fastx_quality_stats
+-rwxr-xr-x root/root 13925 2011-07-08 13:40 ./usr/bin/fastx_barcode_splitter.pl
+drwxr-xr-x root/root 0 2011-07-08 13:40 ./usr/share/
+drwxr-xr-x root/root 0 2011-07-08 13:40 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-07-08 13:40 ./usr/share/doc/fastx-toolkit/
+-rw-r--r-- root/root 425 2010-01-30 07:32 ./usr/share/doc/fastx-toolkit/changelog.gz
+-rw-r--r-- root/root 425 2010-01-30 07:32 ./usr/share/doc/fastx-toolkit/NEWS.gz
+-rw-r--r-- root/root 3728 2009-01-20 16:06 ./usr/share/doc/fastx-toolkit/README.gz
+-rw-r--r-- root/root 121 2008-12-27 03:51 ./usr/share/doc/fastx-toolkit/AUTHORS
+-rw-r--r-- root/root 372 2010-01-30 07:32 ./usr/share/doc/fastx-toolkit/THANKS
+-rw-r--r-- root/root 37672 2011-07-08 12:55 ./usr/share/doc/fastx-toolkit/copyright
+-rw-r--r-- root/root 306 2011-07-08 13:11 ./usr/share/doc/fastx-toolkit/changelog.Debian.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -1016,40 +1025,83 @@ drwxr-xr-x root/root 0 2011-04-14 14:49 ./usr/share/doc/fastx-toolkit/
└──────────────────────────────────────────────────────────────────────────────┘
+lintian
+───────
+
+
+bunzip2: I/O or other error, bailing out. Possible reason follows.
+bunzip2: Broken pipe
+ Input file = (stdin), output file = (stdout)
+dpkg-source: error: bunzip2 gave error exit status 1
+internal error: dpkg-source -x failed with status
+internal error: 29
+warning: collect info unpacked about package fastx-toolkit failed
+warning: skipping check of source package fastx-toolkit
+I: fastx-toolkit: spelling-error-in-binary usr/bin/fastq_masker paramter parameter
+W: fastx-toolkit: script-with-language-extension usr/bin/fasta_clipping_histogram.pl
+W: fastx-toolkit: script-with-language-extension usr/bin/fastq_quality_boxplot_graph.sh
+W: fastx-toolkit: script-with-language-extension usr/bin/fastx_barcode_splitter.pl
+W: fastx-toolkit: script-with-language-extension usr/bin/fastx_nucleotide_distribution_graph.sh
+W: fastx-toolkit: script-with-language-extension usr/bin/fastx_nucleotide_distribution_line_graph.sh
+W: fastx-toolkit: binary-without-manpage usr/bin/fasta_clipping_histogram.pl
+W: fastx-toolkit: binary-without-manpage usr/bin/fasta_formatter
+W: fastx-toolkit: binary-without-manpage usr/bin/fasta_nucleotide_changer
+W: fastx-toolkit: binary-without-manpage usr/bin/fastq_masker
+W: fastx-toolkit: binary-without-manpage usr/bin/fastq_quality_boxplot_graph.sh
+W: fastx-toolkit: binary-without-manpage usr/bin/fastq_quality_converter
+W: fastx-toolkit: binary-without-manpage usr/bin/fastq_quality_filter
+W: fastx-toolkit: binary-without-manpage usr/bin/fastq_quality_trimmer
+W: fastx-toolkit: binary-without-manpage usr/bin/fastq_to_fasta
+W: fastx-toolkit: binary-without-manpage usr/bin/fastx_artifacts_filter
+W: fastx-toolkit: binary-without-manpage usr/bin/fastx_barcode_splitter.pl
+W: fastx-toolkit: binary-without-manpage usr/bin/fastx_clipper
+W: fastx-toolkit: binary-without-manpage usr/bin/fastx_collapser
+W: fastx-toolkit: binary-without-manpage usr/bin/fastx_nucleotide_distribution_graph.sh
+W: fastx-toolkit: binary-without-manpage usr/bin/fastx_nucleotide_distribution_line_graph.sh
+W: fastx-toolkit: binary-without-manpage usr/bin/fastx_quality_stats
+W: fastx-toolkit: binary-without-manpage usr/bin/fastx_renamer
+W: fastx-toolkit: binary-without-manpage usr/bin/fastx_reverse_complement
+W: fastx-toolkit: binary-without-manpage usr/bin/fastx_trimmer
+W: fastx-toolkit: binary-without-manpage usr/bin/fastx_uncollapser
+
+E: Lintian run failed (runtime error)
+
┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /«CHROOT»/«BUILDDIR»
+Purging /«BUILDDIR»
Reading package lists...
Building dependency tree...
Reading state information...
+The following packages were automatically installed and are no longer required:
+ libncursesw5 dialog
+Use 'apt-get autoremove' to remove them.
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Reading package lists...
Building dependency tree...
Reading state information...
+The following packages were automatically installed and are no longer required:
+ gettext-base libncursesw5 dialog
+Use 'apt-get autoremove' to remove them.
The following packages will be REMOVED:
- autotools-dev* bsdmainutils* cdbs* debhelper* file* gettext* gettext-base*
- groff-base* html2text* intltool-debian* libcroco3* libglib2.0-0*
- libgtextutils-dev* libgtextutils0* libmagic1* libpcre3* libpipeline1*
- libpopt0* libunistring0* libxml2* man-db* pkg-config* po-debconf*
- sbuild-build-depends-core-dummy* sbuild-build-depends-fastx-toolkit-dummy*
-0 upgraded, 0 newly installed, 25 to remove and 0 not upgraded.
-After this operation, 29.8 MB disk space will be freed.
-(Reading database ... 11755 files and directories currently installed.)
+ autotools-dev* cdbs* debhelper* file* gettext* groff-base* html2text*
+ intltool-debian* libcroco3* libglib2.0-0* libgtextutils-dev* libgtextutils0*
+ libmagic1* libpcre3* libpipeline1* libpopt0* libunistring0* libxml2* man-db*
+ pkg-config* po-debconf* sbuild-build-depends-fastx-toolkit-dummy*
+0 upgraded, 0 newly installed, 22 to remove and 0 not upgraded.
+After this operation, 26.7 MB disk space will be freed.
+(Reading database ... 12554 files and directories currently installed.)
Removing sbuild-build-depends-fastx-toolkit-dummy ...
Removing autotools-dev ...
Removing cdbs ...
Removing debhelper ...
-Removing man-db ...
-Purging configuration files for man-db ...
-Removing bsdmainutils ...
-Purging configuration files for bsdmainutils ...
Removing file ...
Removing po-debconf ...
Removing intltool-debian ...
Removing gettext ...
-Removing gettext-base ...
+Removing man-db ...
+Purging configuration files for man-db ...
Removing groff-base ...
Purging configuration files for groff-base ...
Removing html2text ...
@@ -1074,24 +1126,24 @@ Removing libunistring0 ...
Purging configuration files for libunistring0 ...
Removing libxml2 ...
Purging configuration files for libxml2 ...
-Removing sbuild-build-depends-core-dummy ...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: amd64
-Build-Space: 11124
-Build-Time: 13
+Build-Space: 11392
+Build-Time: 16
Distribution: unstable
-Install-Time: 29
-Job: fastx-toolkit_0.0.13-1.dsc
+Install-Time: 33
+Job: fastx-toolkit_0.0.13.1-1.dsc
+Lintian: error
Package: fastx-toolkit
-Package-Time: 46
-Source-Version: 0.0.13-1
-Space: 11124
+Package-Time: 52
+Source-Version: 0.0.13.1-1
+Space: 11392
Status: successful
-Version: 0.0.13-1
+Version: 0.0.13.1-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110414-1449
-Build needed 00:00:46, 11124k disc space
+Finished at 20110708-1340
+Build needed 00:00:52, 11392k disc space
diff --git a/dsc b/dsc
index bf294c9..01ff461 100644
--- a/dsc
+++ b/dsc
@@ -1,43 +1,56 @@
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
-Format: 3.0 (quilt)
+Format: 1.8
+Date: Fri, 08 Jul 2011 13:11:37 +0900
Source: fastx-toolkit
Binary: fastx-toolkit
-Architecture: any
-Version: 0.0.13-1
+Architecture: source amd64
+Version: 0.0.13.1-1
+Distribution: unstable
+Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Charles Plessy <plessy at debian.org>
-Dm-Upload-Allowed: yes
-Homepage: http://hannonlab.cshl.edu/fastx_toolkit/
-Standards-Version: 3.9.1
-Vcs-Browser: http://git.debian.org/?p=debian-med/fastx-toolkit.git
-Vcs-Git: git://git.debian.org/git/debian-med/fastx-toolkit.git
-Build-Depends: cdbs, debhelper (>= 8), autotools-dev, pkg-config, libgtextutils-dev
+Changed-By: Charles Plessy <plessy at debian.org>
+Description:
+ fastx-toolkit - FASTQ/A short nucleotide reads pre-processing tools
+Closes: 626761
+Changes:
+ fastx-toolkit (0.0.13.1-1) unstable; urgency=low
+ .
+ * New upstream release (Closes: #626761).
+ * Incremented Standards-Version to reflect conformance with Policy 3.9.2
+ (debian/control, no changes needed).
+ * Corrected Vcs-Git URL (debian/control).
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- f2644723e6cf6022866c2a2ba6e84081b49068c3 14318 fastx-toolkit_0.0.13-1.debian.tar.gz
+ 9a6c04cc41145ff0055b182351f825f993b734ba 2023 fastx-toolkit_0.0.13.1-1.dsc
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+ 95ab1cf0d424bf1928814a863207510f 2023 science optional fastx-toolkit_0.0.13.1-1.dsc
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--
FASTQ/A short-reads pre-processing tools
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