[med-svn] r7304 - in trunk/packages: . gmod gmod/jbrowse/trunk/debian

Steffen Möller moeller at alioth.debian.org
Tue Jul 19 07:50:34 UTC 2011


Author: moeller
Date: 2011-07-19 07:50:34 +0000 (Tue, 19 Jul 2011)
New Revision: 7304

Added:
   trunk/packages/gmod/
   trunk/packages/gmod/chado/
   trunk/packages/gmod/gbrowse/
   trunk/packages/gmod/jbrowse/
Removed:
   trunk/packages/chado/
   trunk/packages/gbrowse/
   trunk/packages/gmod/jbrowse/trunk/debian/init.d.ex
   trunk/packages/gmod/jbrowse/trunk/debian/manpage.1.ex
   trunk/packages/gmod/jbrowse/trunk/debian/manpage.sgml.ex
   trunk/packages/gmod/jbrowse/trunk/debian/manpage.xml.ex
   trunk/packages/gmod/jbrowse/trunk/debian/postinst.ex
   trunk/packages/gmod/jbrowse/trunk/debian/postrm.ex
   trunk/packages/gmod/jbrowse/trunk/debian/preinst.ex
   trunk/packages/gmod/jbrowse/trunk/debian/prerm.ex
Modified:
   trunk/packages/gmod/jbrowse/trunk/debian/README.Debian
Log:
Moved chado and gbrowse directories into gmod subdir.


Modified: trunk/packages/gmod/jbrowse/trunk/debian/README.Debian
===================================================================
--- trunk/packages/jbrowse/trunk/debian/README.Debian	2011-07-14 19:17:02 UTC (rev 7286)
+++ trunk/packages/gmod/jbrowse/trunk/debian/README.Debian	2011-07-19 07:50:34 UTC (rev 7304)
@@ -1,6 +1,8 @@
 jbrowse for Debian
 ------------------
 
-<possible notes regarding this package - if none, delete this file>
+This was just a quick start of a packaging to help communication with
+upstream. The package seems to be functional, just that there is yet 
+no example data installed with it.
 
  -- Steffen Moeller <moeller at debian.org>  Thu, 14 Jul 2011 18:38:37 +0200

Deleted: trunk/packages/gmod/jbrowse/trunk/debian/init.d.ex
===================================================================
--- trunk/packages/jbrowse/trunk/debian/init.d.ex	2011-07-14 19:17:02 UTC (rev 7286)
+++ trunk/packages/gmod/jbrowse/trunk/debian/init.d.ex	2011-07-19 07:50:34 UTC (rev 7304)
@@ -1,154 +0,0 @@
-#!/bin/sh
-### BEGIN INIT INFO
-# Provides:          jbrowse
-# Required-Start:    $network $local_fs
-# Required-Stop:
-# Default-Start:     2 3 4 5
-# Default-Stop:      0 1 6
-# Short-Description: <Enter a short description of the sortware>
-# Description:       <Enter a long description of the software>
-#                    <...>
-#                    <...>
-### END INIT INFO
-
-# Author: Steffen Moeller <moeller at debian.org>
-
-# PATH should only include /usr/* if it runs after the mountnfs.sh script
-PATH=/sbin:/usr/sbin:/bin:/usr/bin
-DESC=jbrowse             # Introduce a short description here
-NAME=jbrowse             # Introduce the short server's name here
-DAEMON=/usr/sbin/jbrowse # Introduce the server's location here
-DAEMON_ARGS=""             # Arguments to run the daemon with
-PIDFILE=/var/run/$NAME.pid
-SCRIPTNAME=/etc/init.d/$NAME
-
-# Exit if the package is not installed
-[ -x $DAEMON ] || exit 0
-
-# Read configuration variable file if it is present
-[ -r /etc/default/$NAME ] && . /etc/default/$NAME
-
-# Load the VERBOSE setting and other rcS variables
-. /lib/init/vars.sh
-
-# Define LSB log_* functions.
-# Depend on lsb-base (>= 3.0-6) to ensure that this file is present.
-. /lib/lsb/init-functions
-
-#
-# Function that starts the daemon/service
-#
-do_start()
-{
-	# Return
-	#   0 if daemon has been started
-	#   1 if daemon was already running
-	#   2 if daemon could not be started
-	start-stop-daemon --start --quiet --pidfile $PIDFILE --exec $DAEMON --test > /dev/null \
-		|| return 1
-	start-stop-daemon --start --quiet --pidfile $PIDFILE --exec $DAEMON -- \
-		$DAEMON_ARGS \
-		|| return 2
-	# Add code here, if necessary, that waits for the process to be ready
-	# to handle requests from services started subsequently which depend
-	# on this one.  As a last resort, sleep for some time.
-}
-
-#
-# Function that stops the daemon/service
-#
-do_stop()
-{
-	# Return
-	#   0 if daemon has been stopped
-	#   1 if daemon was already stopped
-	#   2 if daemon could not be stopped
-	#   other if a failure occurred
-	start-stop-daemon --stop --quiet --retry=TERM/30/KILL/5 --pidfile $PIDFILE --name $NAME
-	RETVAL="$?"
-	[ "$RETVAL" = 2 ] && return 2
-	# Wait for children to finish too if this is a daemon that forks
-	# and if the daemon is only ever run from this initscript.
-	# If the above conditions are not satisfied then add some other code
-	# that waits for the process to drop all resources that could be
-	# needed by services started subsequently.  A last resort is to
-	# sleep for some time.
-	start-stop-daemon --stop --quiet --oknodo --retry=0/30/KILL/5 --exec $DAEMON
-	[ "$?" = 2 ] && return 2
-	# Many daemons don't delete their pidfiles when they exit.
-	rm -f $PIDFILE
-	return "$RETVAL"
-}
-
-#
-# Function that sends a SIGHUP to the daemon/service
-#
-do_reload() {
-	#
-	# If the daemon can reload its configuration without
-	# restarting (for example, when it is sent a SIGHUP),
-	# then implement that here.
-	#
-	start-stop-daemon --stop --signal 1 --quiet --pidfile $PIDFILE --name $NAME
-	return 0
-}
-
-case "$1" in
-  start)
-    [ "$VERBOSE" != no ] && log_daemon_msg "Starting $DESC " "$NAME"
-    do_start
-    case "$?" in
-		0|1) [ "$VERBOSE" != no ] && log_end_msg 0 ;;
-		2) [ "$VERBOSE" != no ] && log_end_msg 1 ;;
-	esac
-  ;;
-  stop)
-	[ "$VERBOSE" != no ] && log_daemon_msg "Stopping $DESC" "$NAME"
-	do_stop
-	case "$?" in
-		0|1) [ "$VERBOSE" != no ] && log_end_msg 0 ;;
-		2) [ "$VERBOSE" != no ] && log_end_msg 1 ;;
-	esac
-	;;
-  status)
-       status_of_proc "$DAEMON" "$NAME" && exit 0 || exit $?
-       ;;
-  #reload|force-reload)
-	#
-	# If do_reload() is not implemented then leave this commented out
-	# and leave 'force-reload' as an alias for 'restart'.
-	#
-	#log_daemon_msg "Reloading $DESC" "$NAME"
-	#do_reload
-	#log_end_msg $?
-	#;;
-  restart|force-reload)
-	#
-	# If the "reload" option is implemented then remove the
-	# 'force-reload' alias
-	#
-	log_daemon_msg "Restarting $DESC" "$NAME"
-	do_stop
-	case "$?" in
-	  0|1)
-		do_start
-		case "$?" in
-			0) log_end_msg 0 ;;
-			1) log_end_msg 1 ;; # Old process is still running
-			*) log_end_msg 1 ;; # Failed to start
-		esac
-		;;
-	  *)
-	  	# Failed to stop
-		log_end_msg 1
-		;;
-	esac
-	;;
-  *)
-	#echo "Usage: $SCRIPTNAME {start|stop|restart|reload|force-reload}" >&2
-	echo "Usage: $SCRIPTNAME {start|stop|status|restart|force-reload}" >&2
-	exit 3
-	;;
-esac
-
-:

Deleted: trunk/packages/gmod/jbrowse/trunk/debian/manpage.1.ex
===================================================================
--- trunk/packages/jbrowse/trunk/debian/manpage.1.ex	2011-07-14 19:17:02 UTC (rev 7286)
+++ trunk/packages/gmod/jbrowse/trunk/debian/manpage.1.ex	2011-07-19 07:50:34 UTC (rev 7304)
@@ -1,59 +0,0 @@
-.\"                                      Hey, EMACS: -*- nroff -*-
-.\" First parameter, NAME, should be all caps
-.\" Second parameter, SECTION, should be 1-8, maybe w/ subsection
-.\" other parameters are allowed: see man(7), man(1)
-.TH JBROWSE SECTION "July 14, 2011"
-.\" Please adjust this date whenever revising the manpage.
-.\"
-.\" Some roff macros, for reference:
-.\" .nh        disable hyphenation
-.\" .hy        enable hyphenation
-.\" .ad l      left justify
-.\" .ad b      justify to both left and right margins
-.\" .nf        disable filling
-.\" .fi        enable filling
-.\" .br        insert line break
-.\" .sp <n>    insert n+1 empty lines
-.\" for manpage-specific macros, see man(7)
-.SH NAME
-jbrowse \- program to do something
-.SH SYNOPSIS
-.B jbrowse
-.RI [ options ] " files" ...
-.br
-.B bar
-.RI [ options ] " files" ...
-.SH DESCRIPTION
-This manual page documents briefly the
-.B jbrowse
-and
-.B bar
-commands.
-.PP
-.\" TeX users may be more comfortable with the \fB<whatever>\fP and
-.\" \fI<whatever>\fP escape sequences to invode bold face and italics,
-.\" respectively.
-\fBjbrowse\fP is a program that...
-.SH OPTIONS
-These programs follow the usual GNU command line syntax, with long
-options starting with two dashes (`-').
-A summary of options is included below.
-For a complete description, see the Info files.
-.TP
-.B \-h, \-\-help
-Show summary of options.
-.TP
-.B \-v, \-\-version
-Show version of program.
-.SH SEE ALSO
-.BR bar (1),
-.BR baz (1).
-.br
-The programs are documented fully by
-.IR "The Rise and Fall of a Fooish Bar" ,
-available via the Info system.
-.SH AUTHOR
-jbrowse was written by <upstream author>.
-.PP
-This manual page was written by Steffen Moeller <moeller at debian.org>,
-for the Debian project (and may be used by others).

Deleted: trunk/packages/gmod/jbrowse/trunk/debian/manpage.sgml.ex
===================================================================
--- trunk/packages/jbrowse/trunk/debian/manpage.sgml.ex	2011-07-14 19:17:02 UTC (rev 7286)
+++ trunk/packages/gmod/jbrowse/trunk/debian/manpage.sgml.ex	2011-07-19 07:50:34 UTC (rev 7304)
@@ -1,154 +0,0 @@
-<!doctype refentry PUBLIC "-//OASIS//DTD DocBook V4.1//EN" [
-
-<!-- Process this file with docbook-to-man to generate an nroff manual
-     page: `docbook-to-man manpage.sgml > manpage.1'.  You may view
-     the manual page with: `docbook-to-man manpage.sgml | nroff -man |
-     less'.  A typical entry in a Makefile or Makefile.am is:
-
-manpage.1: manpage.sgml
-	docbook-to-man $< > $@
-
-
-	The docbook-to-man binary is found in the docbook-to-man package.
-	Please remember that if you create the nroff version in one of the
-	debian/rules file targets (such as build), you will need to include
-	docbook-to-man in your Build-Depends control field.
-
-  -->
-
-  <!-- Fill in your name for FIRSTNAME and SURNAME. -->
-  <!ENTITY dhfirstname "<firstname>FIRSTNAME</firstname>">
-  <!ENTITY dhsurname   "<surname>SURNAME</surname>">
-  <!-- Please adjust the date whenever revising the manpage. -->
-  <!ENTITY dhdate      "<date>July 14, 2011</date>">
-  <!-- SECTION should be 1-8, maybe w/ subsection other parameters are
-       allowed: see man(7), man(1). -->
-  <!ENTITY dhsection   "<manvolnum>SECTION</manvolnum>">
-  <!ENTITY dhemail     "<email>moeller at debian.org</email>">
-  <!ENTITY dhusername  "Steffen Moeller">
-  <!ENTITY dhucpackage "<refentrytitle>JBROWSE</refentrytitle>">
-  <!ENTITY dhpackage   "jbrowse">
-
-  <!ENTITY debian      "<productname>Debian</productname>">
-  <!ENTITY gnu         "<acronym>GNU</acronym>">
-  <!ENTITY gpl         "&gnu; <acronym>GPL</acronym>">
-]>
-
-<refentry>
-  <refentryinfo>
-    <address>
-      &dhemail;
-    </address>
-    <author>
-      &dhfirstname;
-      &dhsurname;
-    </author>
-    <copyright>
-      <year>2003</year>
-      <holder>&dhusername;</holder>
-    </copyright>
-    &dhdate;
-  </refentryinfo>
-  <refmeta>
-    &dhucpackage;
-
-    &dhsection;
-  </refmeta>
-  <refnamediv>
-    <refname>&dhpackage;</refname>
-
-    <refpurpose>program to do something</refpurpose>
-  </refnamediv>
-  <refsynopsisdiv>
-    <cmdsynopsis>
-      <command>&dhpackage;</command>
-
-      <arg><option>-e <replaceable>this</replaceable></option></arg>
-
-      <arg><option>--example <replaceable>that</replaceable></option></arg>
-    </cmdsynopsis>
-  </refsynopsisdiv>
-  <refsect1>
-    <title>DESCRIPTION</title>
-
-    <para>This manual page documents briefly the
-      <command>&dhpackage;</command> and <command>bar</command>
-      commands.</para>
-
-    <para>This manual page was written for the &debian; distribution
-      because the original program does not have a manual page.
-      Instead, it has documentation in the &gnu;
-      <application>Info</application> format; see below.</para>
-
-    <para><command>&dhpackage;</command> is a program that...</para>
-
-  </refsect1>
-  <refsect1>
-    <title>OPTIONS</title>
-
-    <para>These programs follow the usual &gnu; command line syntax,
-      with long options starting with two dashes (`-').  A summary of
-      options is included below.  For a complete description, see the
-      <application>Info</application> files.</para>
-
-    <variablelist>
-      <varlistentry>
-        <term><option>-h</option>
-          <option>--help</option>
-        </term>
-        <listitem>
-          <para>Show summary of options.</para>
-        </listitem>
-      </varlistentry>
-      <varlistentry>
-        <term><option>-v</option>
-          <option>--version</option>
-        </term>
-        <listitem>
-          <para>Show version of program.</para>
-        </listitem>
-      </varlistentry>
-    </variablelist>
-  </refsect1>
-  <refsect1>
-    <title>SEE ALSO</title>
-
-    <para>bar (1), baz (1).</para>
-
-    <para>The programs are documented fully by <citetitle>The Rise and
-      Fall of a Fooish Bar</citetitle> available via the
-      <application>Info</application> system.</para>
-  </refsect1>
-  <refsect1>
-    <title>AUTHOR</title>
-
-    <para>This manual page was written by &dhusername; &dhemail; for
-      the &debian; system (and may be used by others).  Permission is
-      granted to copy, distribute and/or modify this document under
-      the terms of the &gnu; General Public License, Version 2 any
-      later version published by the Free Software Foundation.
-    </para>
-    <para>
-      On Debian systems, the complete text of the GNU General Public
-      License can be found in /usr/share/common-licenses/GPL.
-    </para>
-
-  </refsect1>
-</refentry>
-
-<!-- Keep this comment at the end of the file
-Local variables:
-mode: sgml
-sgml-omittag:t
-sgml-shorttag:t
-sgml-minimize-attributes:nil
-sgml-always-quote-attributes:t
-sgml-indent-step:2
-sgml-indent-data:t
-sgml-parent-document:nil
-sgml-default-dtd-file:nil
-sgml-exposed-tags:nil
-sgml-local-catalogs:nil
-sgml-local-ecat-files:nil
-End:
--->

Deleted: trunk/packages/gmod/jbrowse/trunk/debian/manpage.xml.ex
===================================================================
--- trunk/packages/jbrowse/trunk/debian/manpage.xml.ex	2011-07-14 19:17:02 UTC (rev 7286)
+++ trunk/packages/gmod/jbrowse/trunk/debian/manpage.xml.ex	2011-07-19 07:50:34 UTC (rev 7304)
@@ -1,291 +0,0 @@
-<?xml version='1.0' encoding='UTF-8'?>
-<!DOCTYPE refentry PUBLIC "-//OASIS//DTD DocBook XML V4.5//EN"
-"http://www.oasis-open.org/docbook/xml/4.5/docbookx.dtd" [
-
-<!--
-
-`xsltproc -''-nonet \
-          -''-param man.charmap.use.subset "0" \
-          -''-param make.year.ranges "1" \
-          -''-param make.single.year.ranges "1" \
-          /usr/share/xml/docbook/stylesheet/docbook-xsl/manpages/docbook.xsl \
-          manpage.xml'
-
-A manual page <package>.<section> will be generated. You may view the
-manual page with: nroff -man <package>.<section> | less'. A typical entry
-in a Makefile or Makefile.am is:
-
-DB2MAN = /usr/share/sgml/docbook/stylesheet/xsl/docbook-xsl/manpages/docbook.xsl
-XP     = xsltproc -''-nonet -''-param man.charmap.use.subset "0"
-
-manpage.1: manpage.xml
-        $(XP) $(DB2MAN) $<
-
-The xsltproc binary is found in the xsltproc package. The XSL files are in
-docbook-xsl. A description of the parameters you can use can be found in the
-docbook-xsl-doc-* packages. Please remember that if you create the nroff
-version in one of the debian/rules file targets (such as build), you will need
-to include xsltproc and docbook-xsl in your Build-Depends control field.
-Alternatively use the xmlto command/package. That will also automatically
-pull in xsltproc and docbook-xsl.
-
-Notes for using docbook2x: docbook2x-man does not automatically create the
-AUTHOR(S) and COPYRIGHT sections. In this case, please add them manually as
-<refsect1> ... </refsect1>.
-
-To disable the automatic creation of the AUTHOR(S) and COPYRIGHT sections
-read /usr/share/doc/docbook-xsl/doc/manpages/authors.html. This file can be
-found in the docbook-xsl-doc-html package.
-
-Validation can be done using: `xmllint -''-noout -''-valid manpage.xml`
-
-General documentation about man-pages and man-page-formatting:
-man(1), man(7), http://www.tldp.org/HOWTO/Man-Page/
-
--->
-
-  <!-- Fill in your name for FIRSTNAME and SURNAME. -->
-  <!ENTITY dhfirstname "FIRSTNAME">
-  <!ENTITY dhsurname   "SURNAME">
-  <!-- dhusername could also be set to "&dhfirstname; &dhsurname;". -->
-  <!ENTITY dhusername  "Steffen Moeller">
-  <!ENTITY dhemail     "moeller at debian.org">
-  <!-- SECTION should be 1-8, maybe w/ subsection other parameters are
-       allowed: see man(7), man(1) and
-       http://www.tldp.org/HOWTO/Man-Page/q2.html. -->
-  <!ENTITY dhsection   "SECTION">
-  <!-- TITLE should be something like "User commands" or similar (see
-       http://www.tldp.org/HOWTO/Man-Page/q2.html). -->
-  <!ENTITY dhtitle     "jbrowse User Manual">
-  <!ENTITY dhucpackage "JBROWSE">
-  <!ENTITY dhpackage   "jbrowse">
-]>
-
-<refentry>
-  <refentryinfo>
-    <title>&dhtitle;</title>
-    <productname>&dhpackage;</productname>
-    <authorgroup>
-      <author>
-       <firstname>&dhfirstname;</firstname>
-        <surname>&dhsurname;</surname>
-        <contrib>Wrote this manpage for the Debian system.</contrib>
-        <address>
-          <email>&dhemail;</email>
-        </address>
-      </author>
-    </authorgroup>
-    <copyright>
-      <year>2007</year>
-      <holder>&dhusername;</holder>
-    </copyright>
-    <legalnotice>
-      <para>This manual page was written for the Debian system
-        (and may be used by others).</para>
-      <para>Permission is granted to copy, distribute and/or modify this
-        document under the terms of the GNU General Public License,
-        Version 2 or (at your option) any later version published by
-        the Free Software Foundation.</para>
-      <para>On Debian systems, the complete text of the GNU General Public
-        License can be found in
-        <filename>/usr/share/common-licenses/GPL</filename>.</para>
-    </legalnotice>
-  </refentryinfo>
-  <refmeta>
-    <refentrytitle>&dhucpackage;</refentrytitle>
-    <manvolnum>&dhsection;</manvolnum>
-  </refmeta>
-  <refnamediv>
-    <refname>&dhpackage;</refname>
-    <refpurpose>program to do something</refpurpose>
-  </refnamediv>
-  <refsynopsisdiv>
-    <cmdsynopsis>
-      <command>&dhpackage;</command>
-      <!-- These are several examples, how syntaxes could look -->
-      <arg choice="plain"><option>-e <replaceable>this</replaceable></option></arg>
-      <arg choice="opt"><option>--example=<parameter>that</parameter></option></arg>
-      <arg choice="opt">
-        <group choice="req">
-          <arg choice="plain"><option>-e</option></arg>
-          <arg choice="plain"><option>--example</option></arg>
-        </group>
-        <replaceable class="option">this</replaceable>
-      </arg>
-      <arg choice="opt">
-        <group choice="req">
-          <arg choice="plain"><option>-e</option></arg>
-          <arg choice="plain"><option>--example</option></arg>
-        </group>
-        <group choice="req">
-          <arg choice="plain"><replaceable>this</replaceable></arg>
-          <arg choice="plain"><replaceable>that</replaceable></arg>
-        </group>
-      </arg>
-    </cmdsynopsis>
-    <cmdsynopsis>
-      <command>&dhpackage;</command>
-      <!-- Normally the help and version options make the programs stop
-           right after outputting the requested information. -->
-      <group choice="opt">
-        <arg choice="plain">
-          <group choice="req">
-            <arg choice="plain"><option>-h</option></arg>
-            <arg choice="plain"><option>--help</option></arg>
-          </group>
-        </arg>
-        <arg choice="plain">
-          <group choice="req">
-            <arg choice="plain"><option>-v</option></arg>
-            <arg choice="plain"><option>--version</option></arg>
-          </group>
-        </arg>
-      </group>
-    </cmdsynopsis>
-  </refsynopsisdiv>
-  <refsect1 id="description">
-    <title>DESCRIPTION</title>
-    <para>This manual page documents briefly the
-      <command>&dhpackage;</command> and <command>bar</command>
-      commands.</para>
-    <para>This manual page was written for the Debian distribution
-      because the original program does not have a manual page.
-      Instead, it has documentation in the GNU <citerefentry>
-        <refentrytitle>info</refentrytitle>
-        <manvolnum>1</manvolnum>
-      </citerefentry> format; see below.</para>
-    <para><command>&dhpackage;</command> is a program that...</para>
-  </refsect1>
-  <refsect1 id="options">
-    <title>OPTIONS</title>
-    <para>The program follows the usual GNU command line syntax,
-      with long options starting with two dashes (`-').  A summary of
-      options is included below.  For a complete description, see the
-      <citerefentry>
-        <refentrytitle>info</refentrytitle>
-        <manvolnum>1</manvolnum>
-      </citerefentry> files.</para>
-    <variablelist>
-      <!-- Use the variablelist.term.separator and the
-           variablelist.term.break.after parameters to
-           control the term elements. -->
-      <varlistentry>
-        <term><option>-e <replaceable>this</replaceable></option></term>
-        <term><option>--example=<replaceable>that</replaceable></option></term>
-        <listitem>
-          <para>Does this and that.</para>
-        </listitem>
-      </varlistentry>
-      <varlistentry>
-        <term><option>-h</option></term>
-        <term><option>--help</option></term>
-        <listitem>
-          <para>Show summary of options.</para>
-        </listitem>
-      </varlistentry>
-      <varlistentry>
-        <term><option>-v</option></term>
-        <term><option>--version</option></term>
-        <listitem>
-          <para>Show version of program.</para>
-        </listitem>
-      </varlistentry>
-    </variablelist>
-  </refsect1>
-  <refsect1 id="files">
-    <title>FILES</title>
-    <variablelist>
-      <varlistentry>
-        <term><filename>/etc/foo.conf</filename></term>
-        <listitem>
-          <para>The system-wide configuration file to control the
-            behaviour of <application>&dhpackage;</application>. See
-            <citerefentry>
-              <refentrytitle>foo.conf</refentrytitle>
-              <manvolnum>5</manvolnum>
-            </citerefentry> for further details.</para>
-        </listitem>
-      </varlistentry>
-      <varlistentry>
-        <term><filename>${HOME}/.foo.conf</filename></term>
-        <listitem>
-          <para>The per-user configuration file to control the
-             behaviour of <application>&dhpackage;</application>. See
-             <citerefentry>
-               <refentrytitle>foo.conf</refentrytitle>
-               <manvolnum>5</manvolnum>
-             </citerefentry> for further details.</para>
-        </listitem>
-      </varlistentry>
-    </variablelist>
-  </refsect1>
-  <refsect1 id="environment">
-    <title>ENVIONMENT</title>
-    <variablelist>
-      <varlistentry>
-        <term><envar>FOO_CONF</envar></term>
-        <listitem>
-          <para>If used, the defined file is used as configuration
-            file (see also <xref linkend="files"/>).</para>
-        </listitem>
-      </varlistentry>
-    </variablelist>
-  </refsect1>
-  <refsect1 id="diagnostics">
-    <title>DIAGNOSTICS</title>
-    <para>The following diagnostics may be issued
-      on <filename class="devicefile">stderr</filename>:</para>
-    <variablelist>
-      <varlistentry>
-        <term><errortext>Bad configuration file. Exiting.</errortext></term>
-        <listitem>
-          <para>The configuration file seems to contain a broken configuration
-            line. Use the <option>--verbose</option> option, to get more info.
-          </para>
-        </listitem>
-      </varlistentry>
-    </variablelist>
-    <para><command>&dhpackage;</command> provides some return codes, that can
-      be used in scripts:</para>
-    <segmentedlist>
-      <segtitle>Code</segtitle>
-      <segtitle>Diagnostic</segtitle>
-      <seglistitem>
-        <seg><errorcode>0</errorcode></seg>
-        <seg>Program exited successfully.</seg>
-      </seglistitem>
-      <seglistitem>
-        <seg><errorcode>1</errorcode></seg>
-        <seg>The configuration file seems to be broken.</seg>
-      </seglistitem>
-    </segmentedlist>
-  </refsect1>
-  <refsect1 id="bugs">
-    <!-- Or use this section to tell about upstream BTS. -->
-    <title>BUGS</title>
-    <para>The program is currently limited to only work
-      with the <package>foobar</package> library.</para>
-    <para>The upstreams <acronym>BTS</acronym> can be found
-      at <ulink url="http://bugzilla.foo.tld"/>.</para>
-  </refsect1>
-  <refsect1 id="see_also">
-    <title>SEE ALSO</title>
-    <!-- In alpabetical order. -->
-    <para><citerefentry>
-        <refentrytitle>bar</refentrytitle>
-        <manvolnum>1</manvolnum>
-      </citerefentry>, <citerefentry>
-        <refentrytitle>baz</refentrytitle>
-        <manvolnum>1</manvolnum>
-      </citerefentry>, <citerefentry>
-        <refentrytitle>foo.conf</refentrytitle>
-        <manvolnum>5</manvolnum>
-      </citerefentry></para>
-    <para>The programs are documented fully by <citetitle>The Rise and
-      Fall of a Fooish Bar</citetitle> available via the <citerefentry>
-        <refentrytitle>info</refentrytitle>
-        <manvolnum>1</manvolnum>
-      </citerefentry> system.</para>
-  </refsect1>
-</refentry>
-

Deleted: trunk/packages/gmod/jbrowse/trunk/debian/postinst.ex
===================================================================
--- trunk/packages/jbrowse/trunk/debian/postinst.ex	2011-07-14 19:17:02 UTC (rev 7286)
+++ trunk/packages/gmod/jbrowse/trunk/debian/postinst.ex	2011-07-19 07:50:34 UTC (rev 7304)
@@ -1,39 +0,0 @@
-#!/bin/sh
-# postinst script for jbrowse
-#
-# see: dh_installdeb(1)
-
-set -e
-
-# summary of how this script can be called:
-#        * <postinst> `configure' <most-recently-configured-version>
-#        * <old-postinst> `abort-upgrade' <new version>
-#        * <conflictor's-postinst> `abort-remove' `in-favour' <package>
-#          <new-version>
-#        * <postinst> `abort-remove'
-#        * <deconfigured's-postinst> `abort-deconfigure' `in-favour'
-#          <failed-install-package> <version> `removing'
-#          <conflicting-package> <version>
-# for details, see http://www.debian.org/doc/debian-policy/ or
-# the debian-policy package
-
-
-case "$1" in
-    configure)
-    ;;
-
-    abort-upgrade|abort-remove|abort-deconfigure)
-    ;;
-
-    *)
-        echo "postinst called with unknown argument \`$1'" >&2
-        exit 1
-    ;;
-esac
-
-# dh_installdeb will replace this with shell code automatically
-# generated by other debhelper scripts.
-
-#DEBHELPER#
-
-exit 0

Deleted: trunk/packages/gmod/jbrowse/trunk/debian/postrm.ex
===================================================================
--- trunk/packages/jbrowse/trunk/debian/postrm.ex	2011-07-14 19:17:02 UTC (rev 7286)
+++ trunk/packages/gmod/jbrowse/trunk/debian/postrm.ex	2011-07-19 07:50:34 UTC (rev 7304)
@@ -1,37 +0,0 @@
-#!/bin/sh
-# postrm script for jbrowse
-#
-# see: dh_installdeb(1)
-
-set -e
-
-# summary of how this script can be called:
-#        * <postrm> `remove'
-#        * <postrm> `purge'
-#        * <old-postrm> `upgrade' <new-version>
-#        * <new-postrm> `failed-upgrade' <old-version>
-#        * <new-postrm> `abort-install'
-#        * <new-postrm> `abort-install' <old-version>
-#        * <new-postrm> `abort-upgrade' <old-version>
-#        * <disappearer's-postrm> `disappear' <overwriter>
-#          <overwriter-version>
-# for details, see http://www.debian.org/doc/debian-policy/ or
-# the debian-policy package
-
-
-case "$1" in
-    purge|remove|upgrade|failed-upgrade|abort-install|abort-upgrade|disappear)
-    ;;
-
-    *)
-        echo "postrm called with unknown argument \`$1'" >&2
-        exit 1
-    ;;
-esac
-
-# dh_installdeb will replace this with shell code automatically
-# generated by other debhelper scripts.
-
-#DEBHELPER#
-
-exit 0

Deleted: trunk/packages/gmod/jbrowse/trunk/debian/preinst.ex
===================================================================
--- trunk/packages/jbrowse/trunk/debian/preinst.ex	2011-07-14 19:17:02 UTC (rev 7286)
+++ trunk/packages/gmod/jbrowse/trunk/debian/preinst.ex	2011-07-19 07:50:34 UTC (rev 7304)
@@ -1,35 +0,0 @@
-#!/bin/sh
-# preinst script for jbrowse
-#
-# see: dh_installdeb(1)
-
-set -e
-
-# summary of how this script can be called:
-#        * <new-preinst> `install'
-#        * <new-preinst> `install' <old-version>
-#        * <new-preinst> `upgrade' <old-version>
-#        * <old-preinst> `abort-upgrade' <new-version>
-# for details, see http://www.debian.org/doc/debian-policy/ or
-# the debian-policy package
-
-
-case "$1" in
-    install|upgrade)
-    ;;
-
-    abort-upgrade)
-    ;;
-
-    *)
-        echo "preinst called with unknown argument \`$1'" >&2
-        exit 1
-    ;;
-esac
-
-# dh_installdeb will replace this with shell code automatically
-# generated by other debhelper scripts.
-
-#DEBHELPER#
-
-exit 0

Deleted: trunk/packages/gmod/jbrowse/trunk/debian/prerm.ex
===================================================================
--- trunk/packages/jbrowse/trunk/debian/prerm.ex	2011-07-14 19:17:02 UTC (rev 7286)
+++ trunk/packages/gmod/jbrowse/trunk/debian/prerm.ex	2011-07-19 07:50:34 UTC (rev 7304)
@@ -1,38 +0,0 @@
-#!/bin/sh
-# prerm script for jbrowse
-#
-# see: dh_installdeb(1)
-
-set -e
-
-# summary of how this script can be called:
-#        * <prerm> `remove'
-#        * <old-prerm> `upgrade' <new-version>
-#        * <new-prerm> `failed-upgrade' <old-version>
-#        * <conflictor's-prerm> `remove' `in-favour' <package> <new-version>
-#        * <deconfigured's-prerm> `deconfigure' `in-favour'
-#          <package-being-installed> <version> `removing'
-#          <conflicting-package> <version>
-# for details, see http://www.debian.org/doc/debian-policy/ or
-# the debian-policy package
-
-
-case "$1" in
-    remove|upgrade|deconfigure)
-    ;;
-
-    failed-upgrade)
-    ;;
-
-    *)
-        echo "prerm called with unknown argument \`$1'" >&2
-        exit 1
-    ;;
-esac
-
-# dh_installdeb will replace this with shell code automatically
-# generated by other debhelper scripts.
-
-#DEBHELPER#
-
-exit 0




More information about the debian-med-commit mailing list