[med-svn] [SCM] picard-tools annotated tag, debian/1.46-1, created. debian/1.46-1

[Charles Plessy]

The annotated tag, debian/1.46-1 has been created
        at  029bf1cd05d61624d41f5d86d8983a2b685d9646 (tag)
   tagging  4a39ad6ee0f0fe8e1a9df3adb5d74f606517b75f (commit)
  replaces  upstream/1.46
 tagged by  Charles Plessy
        on  Fri Jun 3 21:01:23 2011 +0900

- Shortlog ------------------------------------------------------------
Uploaded picard-tools_1.46-1_amd64.changes.
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Charles Plessy (29):
      get-orig-source target adapted from ‘http://wiki.debian.org/SandroTosi/Svn_get-orig-source’.
      Merge commit 'upstream/1.23'
      New upstream release 1.23.
      Found GPL and “All rights reserved” upstream files.
      Change the path to javac in the second place where it appears as well.
      Making sure that the empty lib directory is present at build time.
      Merge commit 'upstream/1.24'
      New upstream release 1.24.
      Renamed the patch for build.xml so that it does not need to be renamed again at each new upstream release.
      Added a DEP-3 header to the Debian patch.
      Deleted unneeded section field for binary package picard-tools (same as source package).
      Also distribute the explain_sam_flags.py script.
      * Removed the fourth number in Standards-Version (debian/control, see Policy §5.6.11).
      Merge commit 'upstream/1.26'
      * New upstream release; refreshed Debian patch.
      Merge commit 'upstream/1.27'
      * New upstream release.
      * Updated manpage version number after checking on upstream doc that no new program has been added.
      * Uploaded.
      Merge commit 'upstream/1.42'
      Merge commit 'upstream/1.43'
      Merge commit 'upstream/1.44'
      Merge commit 'upstream/1.45'
      Merge commit 'upstream/1.46'
      New upstream releases (no change in licensing or copyright, apart from the year).
      Depend on ${python:Depends} and incremented Standards-Version.
      Documented new commands.
      Corrected and validated with config-edit.
      Uploaded picard-tools_1.46-1_amd64.changes.

Shaun Jackman (10):
      Initial release.
      * debian/links: Change sam-1.22.jar to sam-1.23.jar.
      * build.xml (picard.jar): Add the R scripts.
      Merge commit 'upstream/1.25'
      * debian/changelog: New upstream release.
      * debian/bin/picard-tools: Add java -XX:MaxPermSize=256m to avoid the
      * debian/picard-tools.1: Bump the version number to 1.25.
      * debian/control (Architecture): Change to all, was any.
      Merge commit 'upstream/1.41'
      * New upstream release. Closes: #619201.

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