[med-svn] r6930 - in trunk/packages/mgltools: cmolkit/trunk/debian mglutil/trunk/debian mglutil/trunk/debian/patches molkit/trunk/debian molkit/trunk/debian/patches molkit/trunk/debian/source mslib/trunk/debian networkeditor/trunk/debian pmv/trunk/debian pyautodock/trunk/debian pybabel/trunk/debian qslimlib/trunk/debian scenario2/trunk/debian support/trunk/debian symserv/trunk/debian viewerframework/trunk/debian vision/trunk/debian volume/trunk/debian

Thorsten Alteholz alteholz-guest at alioth.debian.org
Tue Jun 7 17:30:59 UTC 2011 

Author: alteholz-guest
Date: 2011-06-07 17:30:59 +0000 (Tue, 07 Jun 2011)
New Revision: 6930

Added:
   trunk/packages/mgltools/mglutil/trunk/debian/mgltools-mglutil.lintian-overrides
   trunk/packages/mgltools/molkit/trunk/debian/mgltools-molkit.lintian-overrides
   trunk/packages/mgltools/molkit/trunk/debian/source/lintian-overrides
Removed:
   trunk/packages/mgltools/molkit/trunk/debian/lintian-overrides
Modified:
   trunk/packages/mgltools/cmolkit/trunk/debian/control
   trunk/packages/mgltools/cmolkit/trunk/debian/rules
   trunk/packages/mgltools/mglutil/trunk/debian/control
   trunk/packages/mgltools/mglutil/trunk/debian/patches/fix_assertion.patch
   trunk/packages/mgltools/mglutil/trunk/debian/patches/fix_shebangs.patch
   trunk/packages/mgltools/mglutil/trunk/debian/patches/series
   trunk/packages/mgltools/mglutil/trunk/debian/rules
   trunk/packages/mgltools/molkit/trunk/debian/patches/fix_import_star.patch
   trunk/packages/mgltools/molkit/trunk/debian/patches/fix_string_exceptions.patch
   trunk/packages/mgltools/mslib/trunk/debian/control
   trunk/packages/mgltools/mslib/trunk/debian/rules
   trunk/packages/mgltools/networkeditor/trunk/debian/control
   trunk/packages/mgltools/networkeditor/trunk/debian/rules
   trunk/packages/mgltools/pmv/trunk/debian/control
   trunk/packages/mgltools/pmv/trunk/debian/rules
   trunk/packages/mgltools/pyautodock/trunk/debian/control
   trunk/packages/mgltools/pyautodock/trunk/debian/rules
   trunk/packages/mgltools/pybabel/trunk/debian/control
   trunk/packages/mgltools/pybabel/trunk/debian/rules
   trunk/packages/mgltools/qslimlib/trunk/debian/control
   trunk/packages/mgltools/qslimlib/trunk/debian/rules
   trunk/packages/mgltools/scenario2/trunk/debian/control
   trunk/packages/mgltools/scenario2/trunk/debian/rules
   trunk/packages/mgltools/support/trunk/debian/control
   trunk/packages/mgltools/support/trunk/debian/rules
   trunk/packages/mgltools/symserv/trunk/debian/control
   trunk/packages/mgltools/symserv/trunk/debian/rules
   trunk/packages/mgltools/viewerframework/trunk/debian/control
   trunk/packages/mgltools/viewerframework/trunk/debian/rules
   trunk/packages/mgltools/vision/trunk/debian/control
   trunk/packages/mgltools/vision/trunk/debian/rules
   trunk/packages/mgltools/volume/trunk/debian/control
   trunk/packages/mgltools/volume/trunk/debian/rules
Log:
more progress towards new version: especially debhelper >= 8 and no more cdbs

Modified: trunk/packages/mgltools/cmolkit/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/cmolkit/trunk/debian/control	2011-06-07 17:20:18 UTC (rev 6929)
+++ trunk/packages/mgltools/cmolkit/trunk/debian/control	2011-06-07 17:30:59 UTC (rev 6930)
@@ -5,7 +5,7 @@
 DM-Upload-Allowed: yes
 XS-Autobuild: yes
 Uploaders: Steffen Moeller <moeller at debian.org>, Sargis Dallakyan <sargis at scripps.edu>, Thorsten Alteholz <debian at alteholz.de>
-Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4), python-all-dev
+Build-Depends: debhelper (>= 8), python-all-dev (>= 2.6)
 Standards-Version: 3.9.2
 XS-Python-Version: >= 2.5
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/cmolkit/trunk/?rev=0&sc=0

Modified: trunk/packages/mgltools/cmolkit/trunk/debian/rules
===================================================================
--- trunk/packages/mgltools/cmolkit/trunk/debian/rules	2011-06-07 17:20:18 UTC (rev 6929)
+++ trunk/packages/mgltools/cmolkit/trunk/debian/rules	2011-06-07 17:30:59 UTC (rev 6930)
@@ -1,20 +1,16 @@
 #!/usr/bin/make -f
 # -*- makefile -*-
-# Sample debian/rules that uses debhelper.
-# This file was originally written by Joey Hess and Craig Small.
-# As a special exception, when this file is copied by dh-make into a
-# dh-make output file, you may use that output file without restriction.
-# This special exception was added by Craig Small in version 0.37 of dh-make.
+# debian/rules for mgltools-cmolkit
 
 # Uncomment this to turn on verbose mode.
 #export DH_VERBOSE=1
 
-export DEB_PYTHON_SYSTEM=pycentral
+PYVERS := $(shell pyversions -vs)
 
-include /usr/share/cdbs/1/rules/debhelper.mk
-include /usr/share/cdbs/1/class/python-distutils.mk
-#include /usr/share/cdbs/1/rules/simple-patchsys.mk
+%:
+	dh $@ --with python2
 
-clean::
+override_dh_clean:
+	dh_clean
 	find . -name CVS -a -type d| xargs -r rm -r
-	rm -rf build build-stamp debian/Pmv
+	rm -rf build build-stamp

Modified: trunk/packages/mgltools/mglutil/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/mglutil/trunk/debian/control	2011-06-07 17:20:18 UTC (rev 6929)
+++ trunk/packages/mgltools/mglutil/trunk/debian/control	2011-06-07 17:30:59 UTC (rev 6930)
@@ -7,7 +7,7 @@
 Uploaders: Steffen Moeller <moeller at debian.org>, Sargis Dallakyan <sargis at scripps.edu>,
  Andreas Tille <tille at debian.org>,
  Thorsten Alteholz <debian at alteholz.de>
-Build-Depends: debhelper (>= 8), python-all-dev  (>= 2.6)
+Build-Depends: debhelper (>= 8), python-all  (>= 2.6)
 Standards-Version: 3.9.2
 XS-Python-Version: >= 2.6
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/pybabel/trunk/?rev=0&sc=0

Added: trunk/packages/mgltools/mglutil/trunk/debian/mgltools-mglutil.lintian-overrides
===================================================================
--- trunk/packages/mgltools/mglutil/trunk/debian/mgltools-mglutil.lintian-overrides	                        (rev 0)
+++ trunk/packages/mgltools/mglutil/trunk/debian/mgltools-mglutil.lintian-overrides	2011-06-07 17:30:59 UTC (rev 6930)
@@ -0,0 +1,2 @@
+# the license is in debian/copyright but upstream wants to have it there as well
+mgltools-mglutil: extra-license-file

Modified: trunk/packages/mgltools/mglutil/trunk/debian/patches/fix_assertion.patch
===================================================================
--- trunk/packages/mgltools/mglutil/trunk/debian/patches/fix_assertion.patch	2011-06-07 17:20:18 UTC (rev 6929)
+++ trunk/packages/mgltools/mglutil/trunk/debian/patches/fix_assertion.patch	2011-06-07 17:30:59 UTC (rev 6930)
@@ -1,3 +1,6 @@
+Description: fix compatibility with Python 2.6
+Author: Piotr Ożarowski <piotr at debian.org>
+Last-Update: 2010-06-30
 Index: mgltools-mglutil-1.5.4.cvs.20090603/mglutil/math/Tests/test_matToAxis.py
 ===================================================================
 --- mgltools-mglutil-1.5.4.cvs.20090603.orig/mglutil/math/Tests/test_matToAxis.py

Modified: trunk/packages/mgltools/mglutil/trunk/debian/patches/fix_shebangs.patch
===================================================================
--- trunk/packages/mgltools/mglutil/trunk/debian/patches/fix_shebangs.patch	2011-06-07 17:20:18 UTC (rev 6929)
+++ trunk/packages/mgltools/mglutil/trunk/debian/patches/fix_shebangs.patch	2011-06-07 17:30:59 UTC (rev 6930)
@@ -1,3 +1,6 @@
+Description: drop hardcoded pythoh2.5 dependency
+Author: Piotr Ożarowski <piotr at debian.org>
+Last-Update: 2010-06-30
 Index: mgltools-mglutil-1.5.4.cvs.20090603/mglutil/TestUtil/bin/publish
 ===================================================================
 --- mgltools-mglutil-1.5.4.cvs.20090603.orig/mglutil/TestUtil/bin/publish
@@ -16,8 +19,8 @@
 -#!/usr/bin/env python2.5
 +#!/usr/bin/env python
  #
- 
- from optparse import OptionParser
+ import sys
+ print "running Python:", sys.executable
 Index: mgltools-mglutil-1.5.4.cvs.20090603/mglutil/TestUtil/publishPack.csh
 ===================================================================
 --- mgltools-mglutil-1.5.4.cvs.20090603.orig/mglutil/TestUtil/publishPack.csh

Modified: trunk/packages/mgltools/mglutil/trunk/debian/patches/series
===================================================================
--- trunk/packages/mgltools/mglutil/trunk/debian/patches/series	2011-06-07 17:20:18 UTC (rev 6929)
+++ trunk/packages/mgltools/mglutil/trunk/debian/patches/series	2011-06-07 17:30:59 UTC (rev 6930)
@@ -1,2 +1,2 @@
 fix_assertion.patch
-#fix_shebangs.patch
+fix_shebangs.patch

Modified: trunk/packages/mgltools/mglutil/trunk/debian/rules
===================================================================
--- trunk/packages/mgltools/mglutil/trunk/debian/rules	2011-06-07 17:20:18 UTC (rev 6929)
+++ trunk/packages/mgltools/mglutil/trunk/debian/rules	2011-06-07 17:30:59 UTC (rev 6930)
@@ -15,4 +15,4 @@
 	find . -name CVS -a -type d| xargs -r rm -r
 	find . -name "*.gif" | xargs -r chmod -x
 	find . -name "*.csh" -o -name "getlatest" | xargs -r chmod +x
-	rm -rf build build-stamp debian/Pmv
+	rm -rf build build-stamp debian/mglutil

Deleted: trunk/packages/mgltools/molkit/trunk/debian/lintian-overrides
===================================================================
--- trunk/packages/mgltools/molkit/trunk/debian/lintian-overrides	2011-06-07 17:20:18 UTC (rev 6929)
+++ trunk/packages/mgltools/molkit/trunk/debian/lintian-overrides	2011-06-07 17:30:59 UTC (rev 6930)
@@ -1,9 +0,0 @@
-# These outdated autotools files are not used in the build process - so there is no need to warn about them
-mgltools-molkit source: ancient-autotools-helper-file MolKit/pdb2pqr/config/config.guess 2002-11-30
-mgltools-molkit source: ancient-autotools-helper-file MolKit/pdb2pqr/config/config.sub 2002-11-30
-mgltools-molkit source: ancient-autotools-helper-file MolKit/pdb2pqr/propka/config/config.guess 2002-11-30
-mgltools-molkit source: ancient-autotools-helper-file MolKit/pdb2pqr/propka/config/config.sub 2002-11-30
-mgltools-molkit source: ancient-libtool MolKit/pdb2pqr/config/ltconfig
-mgltools-molkit source: ancient-libtool MolKit/pdb2pqr/config/ltmain.sh 1.4.3
-mgltools-molkit source: ancient-libtool MolKit/pdb2pqr/propka/config/ltconfig
-mgltools-molkit source: ancient-libtool MolKit/pdb2pqr/propka/config/ltmain.sh 1.4.3

Added: trunk/packages/mgltools/molkit/trunk/debian/mgltools-molkit.lintian-overrides
===================================================================
--- trunk/packages/mgltools/molkit/trunk/debian/mgltools-molkit.lintian-overrides	                        (rev 0)
+++ trunk/packages/mgltools/molkit/trunk/debian/mgltools-molkit.lintian-overrides	2011-06-07 17:30:59 UTC (rev 6930)
@@ -0,0 +1,2 @@
+# the license is in debian/copyright but upstream wants to have it there as well
+mgltools-molkit: extra-license-file

Modified: trunk/packages/mgltools/molkit/trunk/debian/patches/fix_import_star.patch
===================================================================
--- trunk/packages/mgltools/molkit/trunk/debian/patches/fix_import_star.patch	2011-06-07 17:20:18 UTC (rev 6929)
+++ trunk/packages/mgltools/molkit/trunk/debian/patches/fix_import_star.patch	2011-06-07 17:30:59 UTC (rev 6930)
@@ -1,3 +1,6 @@
+Description: Build for all supported Python versions
+Author: Piotr Ożarowski <piotr at debian.org> 
+Last-Update: 2010-06-30
 Index: mgltools-molkit-1.5.4.cvs.20090603/MolKit/pdb2pqr/pdb2pka/ligand_topology.py
 ===================================================================
 --- mgltools-molkit-1.5.4.cvs.20090603.orig/MolKit/pdb2pqr/pdb2pka/ligand_topology.py

Modified: trunk/packages/mgltools/molkit/trunk/debian/patches/fix_string_exceptions.patch
===================================================================
--- trunk/packages/mgltools/molkit/trunk/debian/patches/fix_string_exceptions.patch	2011-06-07 17:20:18 UTC (rev 6929)
+++ trunk/packages/mgltools/molkit/trunk/debian/patches/fix_string_exceptions.patch	2011-06-07 17:30:59 UTC (rev 6930)
@@ -1,3 +1,6 @@
+Description: use 'raise exception()' instead of simple 'raise'
+Author: Piotr Ożarowski <piotr at debian.org>
+Last-Update: 2010-06-30
 Index: mgltools-molkit-1.5.4.cvs.20090603/MolKit/pdb2pqr/pdb2pka/NEWligand_topology.py
 ===================================================================
 --- mgltools-molkit-1.5.4.cvs.20090603.orig/MolKit/pdb2pqr/pdb2pka/NEWligand_topology.py

Added: trunk/packages/mgltools/molkit/trunk/debian/source/lintian-overrides
===================================================================
--- trunk/packages/mgltools/molkit/trunk/debian/source/lintian-overrides	                        (rev 0)
+++ trunk/packages/mgltools/molkit/trunk/debian/source/lintian-overrides	2011-06-07 17:30:59 UTC (rev 6930)
@@ -0,0 +1,4 @@
+# These outdated autotools files are not used in the build process 
+# - so there is no need to warn about them
+mgltools-molkit source: ancient-autotools-helper-file
+mgltools-molkit source: ancient-libtool

Modified: trunk/packages/mgltools/mslib/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/mslib/trunk/debian/control	2011-06-07 17:20:18 UTC (rev 6929)
+++ trunk/packages/mgltools/mslib/trunk/debian/control	2011-06-07 17:30:59 UTC (rev 6930)
@@ -5,7 +5,7 @@
 DM-Upload-Allowed: yes
 XS-Autobuild: no
 Uploaders: Steffen Moeller <moeller at debian.org>, Sargis Dallakyan <sargis at scripps.edu>, Thorsten Alteholz <debian at alteholz.de>
-Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4), python-all-dev
+Build-Depends: debhelper (>= 8), python-all-dev (>= 2.6)
 Standards-Version: 3.9.2
 XS-Python-Version: >= 2.5
 Homepage: http://mgltools.scripps.edu/

Modified: trunk/packages/mgltools/mslib/trunk/debian/rules
===================================================================
--- trunk/packages/mgltools/mslib/trunk/debian/rules	2011-06-07 17:20:18 UTC (rev 6929)
+++ trunk/packages/mgltools/mslib/trunk/debian/rules	2011-06-07 17:30:59 UTC (rev 6930)
@@ -1,36 +1,16 @@
 #!/usr/bin/make -f
 # -*- makefile -*-
-# Sample debian/rules that uses debhelper.
-# This file was originally written by Joey Hess and Craig Small.
-# As a special exception, when this file is copied by dh-make into a
-# dh-make output file, you may use that output file without restriction.
-# This special exception was added by Craig Small in version 0.37 of dh-make.
+# debian/rules for mgltools-mslib
 
 # Uncomment this to turn on verbose mode.
 #export DH_VERBOSE=1
 
-export DEB_PYTHON_SYSTEM=pycentral
+%:
+	dh $@ --with python2
 
-include /usr/share/cdbs/1/rules/debhelper.mk
-include /usr/share/cdbs/1/class/python-distutils.mk
-#include /usr/share/cdbs/1/rules/simple-patchsys.mk
-
-# The static libraries are not needed once the
-# extension is built.
-#BUILDARCH=$(shell dpkg-architecture -qDEB_BUILD_ARCH)
-#install::
-#	if [ "amd64" = $(BUILDARCH) ]; then \
-#		echo "Installing libs for amd64" ; \
-#		cp lib/linux2/* $(CURDIR)/debian/mslib/usr/lib/ ; \
-#	elif [ "i386" = $(BUILDARCH) ]; then \
-#		echo "Installing libs for i386" ; \
-#		cp lib/linux2/* $(CURDIR)/debian/mslib/usr/lib/ ; \
-#	else \
-#		echo "Not prepared for architecture $(BUILDARCH)."; \
-#	fi
-
-
-clean::
-	rm -rf build build-stamp debian/Pmv
-	find . -name runPmv -exec chmod 755 {} \;
+override_dh_clean:
+	dh_clean
+	find . -name CVS -a -type d| xargs -r rm -r
+	rm -rf build build-stamp 
 	find . -name "*.pdb" -exec chmod 644 {} \;
+	find . -name runPmv -exec chmod 755 {} \;

Modified: trunk/packages/mgltools/networkeditor/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/networkeditor/trunk/debian/control	2011-06-07 17:20:18 UTC (rev 6929)
+++ trunk/packages/mgltools/networkeditor/trunk/debian/control	2011-06-07 17:30:59 UTC (rev 6930)
@@ -5,7 +5,7 @@
 DM-Upload-Allowed: yes
 XS-Autobuild: yes
 Uploaders: Steffen Moeller <moeller at debian.org>, Sargis Dallakyan <sargis at scripps.edu>, Thorsten Alteholz <debian at alteholz.de>
-Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4), python-all
+Build-Depends: debhelper (>= 8), python-all (>= 2.6)
 Standards-Version: 3.9.2
 XS-Python-Version: >= 2.5
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/networkeditor/trunk/?rev=0&sc=0

Modified: trunk/packages/mgltools/networkeditor/trunk/debian/rules
===================================================================
--- trunk/packages/mgltools/networkeditor/trunk/debian/rules	2011-06-07 17:20:18 UTC (rev 6929)
+++ trunk/packages/mgltools/networkeditor/trunk/debian/rules	2011-06-07 17:30:59 UTC (rev 6930)
@@ -1,20 +1,14 @@
 #!/usr/bin/make -f
 # -*- makefile -*-
-# Sample debian/rules that uses debhelper.
-# This file was originally written by Joey Hess and Craig Small.
-# As a special exception, when this file is copied by dh-make into a
-# dh-make output file, you may use that output file without restriction.
-# This special exception was added by Craig Small in version 0.37 of dh-make.
+# debian/rules for mgltools-networkeditor
 
 # Uncomment this to turn on verbose mode.
 #export DH_VERBOSE=1
 
-export DEB_PYTHON_SYSTEM=pycentral
+%:
+	dh $@ --with python2
 
-include /usr/share/cdbs/1/rules/debhelper.mk
-include /usr/share/cdbs/1/class/python-distutils.mk
-#include /usr/share/cdbs/1/rules/simple-patchsys.mk
-
-clean::
+override_dh_clean:
+	dh_clean
 	find . -name CVS -a -type d| xargs -r rm -r
-	rm -rf build build-stamp debian/Pmv
+	rm -rf build build-stamp

Modified: trunk/packages/mgltools/pmv/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/pmv/trunk/debian/control	2011-06-07 17:20:18 UTC (rev 6929)
+++ trunk/packages/mgltools/pmv/trunk/debian/control	2011-06-07 17:30:59 UTC (rev 6930)
@@ -7,7 +7,7 @@
 Uploaders: Steffen Moeller <moeller at debian.org>, Sargis Dallakyan <sargis at scripps.edu>,
  Andreas Tille <tille at debian.org>,
  Thorsten Alteholz <debian at alteholz.de>
-Build-Depends: debhelper (>= 7), python-central (>= 0.5.6), cdbs (>= 0.4), python-all
+Build-Depends: debhelper (>= 8), python-all (>= 2.6)
 Standards-Version: 3.9.2
 XS-Python-Version: >= 2.5
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/pmv/trunk/?rev=0&sc=0

Modified: trunk/packages/mgltools/pmv/trunk/debian/rules
===================================================================
--- trunk/packages/mgltools/pmv/trunk/debian/rules	2011-06-07 17:20:18 UTC (rev 6929)
+++ trunk/packages/mgltools/pmv/trunk/debian/rules	2011-06-07 17:30:59 UTC (rev 6930)
@@ -1,24 +1,18 @@
 #!/usr/bin/make -f
 # -*- makefile -*-
-# Sample debian/rules that uses debhelper.
-# This file was originally written by Joey Hess and Craig Small.
-# As a special exception, when this file is copied by dh-make into a
-# dh-make output file, you may use that output file without restriction.
-# This special exception was added by Craig Small in version 0.37 of dh-make.
+# debian/rules for mgltools-pmv
 
 # Uncomment this to turn on verbose mode.
 #export DH_VERBOSE=1
 
-export DEB_PYTHON_SYSTEM=pycentral
+%:
+	dh $@ --with python2
 
-include /usr/share/cdbs/1/rules/debhelper.mk
-include /usr/share/cdbs/1/class/python-distutils.mk
-# no longer required since source format 3.0
-#include /usr/share/cdbs/1/rules/patchsys-quilt.mk
-
-clean::
+override_dh_clean:
+	dh_clean
+	find . -name CVS -a -type d| xargs -r rm -r
 	rm -rf build build-stamp debian/Pmv
 	find . -name runPmv -delete
-	find . -name CVS -a -type d | xargs -r rm -r
 	find . -name "*.pdb" -exec chmod 644 {} \;
 	sed -i -e 's/# update the widget entr.*$$/# update the widget entryfields/' Pmv/sdCommands.py
+

Modified: trunk/packages/mgltools/pyautodock/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/pyautodock/trunk/debian/control	2011-06-07 17:20:18 UTC (rev 6929)
+++ trunk/packages/mgltools/pyautodock/trunk/debian/control	2011-06-07 17:30:59 UTC (rev 6930)
@@ -5,7 +5,7 @@
 DM-Upload-Allowed: yes
 XS-Autobuild: yes
 Uploaders: Steffen Moeller <moeller at debian.org>, Sargis Dallakyan <sargis at scripps.edu>, Thorsten Alteholz <debian at alteholz.de>
-Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4), python-all-dev (>= 2.5)
+Build-Depends: debhelper (>= 8), python-all-dev (>= 2.6)
 Standards-Version: 3.9.2
 XS-Python-Version: >= 2.5
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/pyautodock/trunk/?rev=0&sc=0

Modified: trunk/packages/mgltools/pyautodock/trunk/debian/rules
===================================================================
--- trunk/packages/mgltools/pyautodock/trunk/debian/rules	2011-06-07 17:20:18 UTC (rev 6929)
+++ trunk/packages/mgltools/pyautodock/trunk/debian/rules	2011-06-07 17:30:59 UTC (rev 6930)
@@ -1,21 +1,15 @@
 #!/usr/bin/make -f
 # -*- makefile -*-
-# Sample debian/rules that uses debhelper.
-# This file was originally written by Joey Hess and Craig Small.
-# As a special exception, when this file is copied by dh-make into a
-# dh-make output file, you may use that output file without restriction.
-# This special exception was added by Craig Small in version 0.37 of dh-make.
+# debian/rules for mgltools-pyautodock
 
 # Uncomment this to turn on verbose mode.
 #export DH_VERBOSE=1
 
-export DEB_PYTHON_SYSTEM=pycentral
+%:
+	dh $@ --with python2
 
-include /usr/share/cdbs/1/rules/debhelper.mk
-include /usr/share/cdbs/1/class/python-distutils.mk
-#include /usr/share/cdbs/1/rules/simple-patchsys.mk
-
-clean::
-	find . -name CVS -a -type d | xargs -r rm -r
+override_dh_clean:
+	dh_clean
+	find . -name CVS -a -type d| xargs -r rm -r
 	find . -name runAdt | xargs -r chmod +x 
 	rm -rf build build-stamp

Modified: trunk/packages/mgltools/pybabel/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/pybabel/trunk/debian/control	2011-06-07 17:20:18 UTC (rev 6929)
+++ trunk/packages/mgltools/pybabel/trunk/debian/control	2011-06-07 17:30:59 UTC (rev 6930)
@@ -5,7 +5,7 @@
 DM-Upload-Allowed: yes
 XS-Autobuild: yes
 Uploaders: Steffen Moeller <moeller at debian.org>, Sargis Dallakyan <sargis at scripps.edu>, Thorsten Alteholz <debian at alteholz.de>
-Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4), python-all
+Build-Depends: debhelper (>= 8), python-all (>= 2.6)
 Standards-Version: 3.9.2
 XS-Python-Version: >= 2.5
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/pybabel/trunk/?rev=0&sc=0

Modified: trunk/packages/mgltools/pybabel/trunk/debian/rules
===================================================================
--- trunk/packages/mgltools/pybabel/trunk/debian/rules	2011-06-07 17:20:18 UTC (rev 6929)
+++ trunk/packages/mgltools/pybabel/trunk/debian/rules	2011-06-07 17:30:59 UTC (rev 6930)
@@ -1,20 +1,14 @@
 #!/usr/bin/make -f
 # -*- makefile -*-
-# Sample debian/rules that uses debhelper.
-# This file was originally written by Joey Hess and Craig Small.
-# As a special exception, when this file is copied by dh-make into a
-# dh-make output file, you may use that output file without restriction.
-# This special exception was added by Craig Small in version 0.37 of dh-make.
+# debian/rules for mgltools-pybabel
 
 # Uncomment this to turn on verbose mode.
 #export DH_VERBOSE=1
 
-export DEB_PYTHON_SYSTEM=pycentral
+%:
+	dh $@ --with python2
 
-include /usr/share/cdbs/1/rules/debhelper.mk
-include /usr/share/cdbs/1/class/python-distutils.mk
-#include /usr/share/cdbs/1/rules/simple-patchsys.mk
-
-clean::
+override_dh_clean:
+	dh_clean
 	find . -name CVS -a -type d| xargs -r rm -r
-	rm -rf build build-stamp debian/Pmv
+	rm -rf build build-stamp

Modified: trunk/packages/mgltools/qslimlib/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/qslimlib/trunk/debian/control	2011-06-07 17:20:18 UTC (rev 6929)
+++ trunk/packages/mgltools/qslimlib/trunk/debian/control	2011-06-07 17:30:59 UTC (rev 6930)
@@ -5,7 +5,7 @@
 DM-Upload-Allowed: yes
 XS-Autobuild: yes
 Uploaders: Steffen Moeller <moeller at debian.org>, Sargis Dallakyan <sargis at scripps.edu>, Thorsten Alteholz <debian at alteholz.de>
-Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4), python-all, swig (>= 1.3.20), mesa-common-dev, libglu1-mesa-dev, python-numpy
+Build-Depends: debhelper (>= 8), python-all-dev (>= 2.6) , swig (>= 1.3.20), mesa-common-dev, libglu1-mesa-dev, python-numpy
 Standards-Version: 3.9.2
 XS-Python-Version: >= 2.5
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/qslimlib/trunk/?rev=0&sc=0

Modified: trunk/packages/mgltools/qslimlib/trunk/debian/rules
===================================================================
--- trunk/packages/mgltools/qslimlib/trunk/debian/rules	2011-06-07 17:20:18 UTC (rev 6929)
+++ trunk/packages/mgltools/qslimlib/trunk/debian/rules	2011-06-07 17:30:59 UTC (rev 6930)
@@ -1,19 +1,20 @@
 #!/usr/bin/make -f
 # -*- makefile -*-
-# Sample debian/rules that uses debhelper.
-# This file was originally written by Joey Hess and Craig Small.
-# As a special exception, when this file is copied by dh-make into a
-# dh-make output file, you may use that output file without restriction.
-# This special exception was added by Craig Small in version 0.37 of dh-make.
+# debian/rules for mgltools-qslimlib
 
 # Uncomment this to turn on verbose mode.
 #export DH_VERBOSE=1
 
-export DEB_PYTHON_SYSTEM=pycentral
+PYVERS := $(shell pyversions -vs)
 
-include /usr/share/cdbs/1/rules/debhelper.mk
-include /usr/share/cdbs/1/class/python-distutils.mk
+%:
+	dh $@ --with python2
 
-clean::
+override_dh_clean:
+	dh_clean
 	find . -name CVS -a -type d| xargs -r rm -r
 	rm -rf build build-stamp config.status config.log
+	# this is automatically build and might change during configure
+	# so go away
+	pwd
+	rm src/libgfx/include/gfx/config.h

Modified: trunk/packages/mgltools/scenario2/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/scenario2/trunk/debian/control	2011-06-07 17:20:18 UTC (rev 6929)
+++ trunk/packages/mgltools/scenario2/trunk/debian/control	2011-06-07 17:30:59 UTC (rev 6930)
@@ -5,7 +5,7 @@
 DM-Upload-Allowed: yes
 XS-Autobuild: yes
 Uploaders: Steffen Moeller <moeller at debian.org>, Sargis Dallakyan <sargis at scripps.edu>, Thorsten Alteholz <debian at alteholz.de>
-Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4), python-all (>= 2.5)
+Build-Depends: debhelper (>= 8), python-all (>= 2.6)
 Standards-Version: 3.9.2
 XS-Python-Version: >= 2.5
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/scenario/trunk/?rev=0&sc=0

Modified: trunk/packages/mgltools/scenario2/trunk/debian/rules
===================================================================
--- trunk/packages/mgltools/scenario2/trunk/debian/rules	2011-06-07 17:20:18 UTC (rev 6929)
+++ trunk/packages/mgltools/scenario2/trunk/debian/rules	2011-06-07 17:30:59 UTC (rev 6930)
@@ -1,20 +1,15 @@
 #!/usr/bin/make -f
 # -*- makefile -*-
-# Sample debian/rules that uses debhelper.
-# This file was originally written by Joey Hess and Craig Small.
-# As a special exception, when this file is copied by dh-make into a
-# dh-make output file, you may use that output file without restriction.
-# This special exception was added by Craig Small in version 0.37 of dh-make.
+# debian/rules for mgltools-scenario2
 
 # Uncomment this to turn on verbose mode.
 #export DH_VERBOSE=1
 
-export DEB_PYTHON_SYSTEM=pycentral
+%:
+	dh $@ --with python2
 
-include /usr/share/cdbs/1/rules/debhelper.mk
-include /usr/share/cdbs/1/class/python-distutils.mk
-#include /usr/share/cdbs/1/rules/simple-patchsys.mk
-
-clean::
+override_dh_clean:
+	dh_clean
 	find . -name CVS -a -type d| xargs -r rm -r
 	rm -rf build build-stamp debian/Pmv
+

Modified: trunk/packages/mgltools/support/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/support/trunk/debian/control	2011-06-07 17:20:18 UTC (rev 6929)
+++ trunk/packages/mgltools/support/trunk/debian/control	2011-06-07 17:30:59 UTC (rev 6930)
@@ -5,7 +5,7 @@
 DM-Upload-Allowed: yes
 XS-Autobuild: yes
 Uploaders: Steffen Moeller <moeller at debian.org>, Sargis Dallakyan <sargis at scripps.edu>, Thorsten Alteholz <debian at alteholz.de>
-Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4), python-all
+Build-Depends: debhelper (>= 8), python-all (>= 2.6)
 Standards-Version: 3.9.2
 XS-Python-Version: >= 2.5
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/support/trunk/?rev=0&sc=0

Modified: trunk/packages/mgltools/support/trunk/debian/rules
===================================================================
--- trunk/packages/mgltools/support/trunk/debian/rules	2011-06-07 17:20:18 UTC (rev 6929)
+++ trunk/packages/mgltools/support/trunk/debian/rules	2011-06-07 17:30:59 UTC (rev 6930)
@@ -1,19 +1,16 @@
 #!/usr/bin/make -f
 # -*- makefile -*-
-# Sample debian/rules that uses debhelper.
-# This file was originally written by Joey Hess and Craig Small.
-# As a special exception, when this file is copied by dh-make into a
-# dh-make output file, you may use that output file without restriction.
-# This special exception was added by Craig Small in version 0.37 of dh-make.
+# debian/rules for mgltools-support
 
 # Uncomment this to turn on verbose mode.
 #export DH_VERBOSE=1
 
-export DEB_PYTHON_SYSTEM=pycentral
+PYVERS := $(shell pyversions -vs)
 
-include /usr/share/cdbs/1/rules/debhelper.mk
-include /usr/share/cdbs/1/class/python-distutils.mk
-#include /usr/share/cdbs/1/rules/simple-patchsys.mk
+%:
+	dh $@ --with python2
 
-clean::
+override_dh_clean:
+	dh_clean
+	find . -name CVS -a -type d| xargs -r rm -r
 	rm -rf build build-stamp

Modified: trunk/packages/mgltools/symserv/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/symserv/trunk/debian/control	2011-06-07 17:20:18 UTC (rev 6929)
+++ trunk/packages/mgltools/symserv/trunk/debian/control	2011-06-07 17:30:59 UTC (rev 6930)
@@ -5,7 +5,7 @@
 DM-Upload-Allowed: yes
 XS-Autobuild: yes
 Uploaders: Steffen Moeller <moeller at debian.org>, Sargis Dallakyan <sargis at scripps.edu>, Thorsten Alteholz <debian at alteholz.de>
-Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4), python-all
+Build-Depends: debhelper (>= 8), python-all (>= 2.6)
 Standards-Version: 3.9.2
 XS-Python-Version: >= 2.5
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/symserv/trunk/?rev=0&sc=0

Modified: trunk/packages/mgltools/symserv/trunk/debian/rules
===================================================================
--- trunk/packages/mgltools/symserv/trunk/debian/rules	2011-06-07 17:20:18 UTC (rev 6929)
+++ trunk/packages/mgltools/symserv/trunk/debian/rules	2011-06-07 17:30:59 UTC (rev 6930)
@@ -1,21 +1,15 @@
 #!/usr/bin/make -f
 # -*- makefile -*-
-# Sample debian/rules that uses debhelper.
-# This file was originally written by Joey Hess and Craig Small.
-# As a special exception, when this file is copied by dh-make into a
-# dh-make output file, you may use that output file without restriction.
-# This special exception was added by Craig Small in version 0.37 of dh-make.
+# debian/rules for mgltools-symserv
 
 # Uncomment this to turn on verbose mode.
 #export DH_VERBOSE=1
 
-export DEB_PYTHON_SYSTEM=pycentral
+%:
+	dh $@ --with python2
 
-include /usr/share/cdbs/1/rules/debhelper.mk
-include /usr/share/cdbs/1/class/python-distutils.mk
-#include /usr/share/cdbs/1/rules/simple-patchsys.mk
-
-clean::
+override_dh_clean:
+	dh_clean
 	find . -name CVS -a -type d| xargs -r rm -r
-	rm -rf build build-stamp debian/Pmv
+	rm -rf build build-stamp
 	find . -name *.png -o -name *.pdb -o -name *.gif -exec file chmod 644 '{}' \;

Modified: trunk/packages/mgltools/viewerframework/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/viewerframework/trunk/debian/control	2011-06-07 17:20:18 UTC (rev 6929)
+++ trunk/packages/mgltools/viewerframework/trunk/debian/control	2011-06-07 17:30:59 UTC (rev 6930)
@@ -5,7 +5,7 @@
 DM-Upload-Allowed: yes
 XS-Autobuild: yes
 Uploaders: Steffen Moeller <moeller at debian.org>, Sargis Dallakyan <sargis at scripps.edu>, Thorsten Alteholz <debian at alteholz.de>
-Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4), python-all
+Build-Depends: debhelper (>= 8), python-all (>= 2.6)
 Standards-Version: 3.9.2
 XS-Python-Version: >= 2.5
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/viewerframework/trunk/?rev=0&sc=0

Modified: trunk/packages/mgltools/viewerframework/trunk/debian/rules
===================================================================
--- trunk/packages/mgltools/viewerframework/trunk/debian/rules	2011-06-07 17:20:18 UTC (rev 6929)
+++ trunk/packages/mgltools/viewerframework/trunk/debian/rules	2011-06-07 17:30:59 UTC (rev 6930)
@@ -1,21 +1,15 @@
 #!/usr/bin/make -f
 # -*- makefile -*-
-# Sample debian/rules that uses debhelper.
-# This file was originally written by Joey Hess and Craig Small.
-# As a special exception, when this file is copied by dh-make into a
-# dh-make output file, you may use that output file without restriction.
-# This special exception was added by Craig Small in version 0.37 of dh-make.
+# debian/rules for mgltools-viewerframework
 
 # Uncomment this to turn on verbose mode.
 #export DH_VERBOSE=1
 
-export DEB_PYTHON_SYSTEM=pycentral
+%:
+	dh $@ --with python2
 
-include /usr/share/cdbs/1/rules/debhelper.mk
-include /usr/share/cdbs/1/class/python-distutils.mk
-#include /usr/share/cdbs/1/rules/simple-patchsys.mk
-
-clean::
+override_dh_clean:
+	dh_clean
 	find . -name CVS -a -type d| xargs -r rm -r
-	rm -rf build build-stamp debian/Pmv
 	find . -name *.png -o -name *.pdb -o -name *.gif -exec chmod 644 '{}' \;
+	rm -rf build build-stamp 

Modified: trunk/packages/mgltools/vision/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/vision/trunk/debian/control	2011-06-07 17:20:18 UTC (rev 6929)
+++ trunk/packages/mgltools/vision/trunk/debian/control	2011-06-07 17:30:59 UTC (rev 6930)
@@ -7,7 +7,7 @@
 Uploaders: Steffen Moeller <moeller at debian.org>, Sargis Dallakyan <sargis at scripps.edu>,
  Andreas Tille <tille at debian.org>,
  Thorsten Alteholz <debian at alteholz.de>
-Build-Depends: debhelper (>= 7), python-central (>= 0.5.6), cdbs (>= 0.4), python-all
+Build-Depends: debhelper (>= 8), python-all (>= 2.6)
 Standards-Version: 3.9.2
 XS-Python-Version: >= 2.5
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/vision/trunk/?rev=0&sc=0

Modified: trunk/packages/mgltools/vision/trunk/debian/rules
===================================================================
--- trunk/packages/mgltools/vision/trunk/debian/rules	2011-06-07 17:20:18 UTC (rev 6929)
+++ trunk/packages/mgltools/vision/trunk/debian/rules	2011-06-07 17:30:59 UTC (rev 6930)
@@ -1,23 +1,16 @@
 #!/usr/bin/make -f
 # -*- makefile -*-
-# Sample debian/rules that uses debhelper.
-# This file was originally written by Joey Hess and Craig Small.
-# As a special exception, when this file is copied by dh-make into a
-# dh-make output file, you may use that output file without restriction.
-# This special exception was added by Craig Small in version 0.37 of dh-make.
+# debian/rules for mgltools-vision
 
 # Uncomment this to turn on verbose mode.
 #export DH_VERBOSE=1
 
-export DEB_PYTHON_SYSTEM=pycentral
+%:
+	dh $@ --with python2
 
-include /usr/share/cdbs/1/rules/debhelper.mk
-include /usr/share/cdbs/1/class/python-distutils.mk
-
-install::
-	find . -name "runVision" | xargs -r chmod +x 
-
-clean::
+override_dh_clean:
+	dh_clean
 	find . -name CVS -a -type d| xargs -r rm -r
 	find . -name "runVision" | xargs -r chmod +x 
 	find . -name *.jpg -o -name *.png -o -name *.pdb -o -name *.gif | xargs -r chmod 644
+

Modified: trunk/packages/mgltools/volume/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/volume/trunk/debian/control	2011-06-07 17:20:18 UTC (rev 6929)
+++ trunk/packages/mgltools/volume/trunk/debian/control	2011-06-07 17:30:59 UTC (rev 6930)
@@ -6,7 +6,7 @@
 Uploaders: Steffen Moeller <moeller at debian.org>, Sargis Dallakyan <sargis at scripps.edu>,
  Andreas Tille <tille at debian.org>,
  Thorsten Alteholz <debian at alteholz.de>
-Build-Depends: debhelper (>= 7), python-central (>= 0.5.6), cdbs (>= 0.4), python-all
+Build-Depends: debhelper (>= 8),python-all (>= 2.6)
 Standards-Version: 3.9.2
 XS-Python-Version: >= 2.5
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/volume/trunk/?rev=0&sc=0

Modified: trunk/packages/mgltools/volume/trunk/debian/rules
===================================================================
--- trunk/packages/mgltools/volume/trunk/debian/rules	2011-06-07 17:20:18 UTC (rev 6929)
+++ trunk/packages/mgltools/volume/trunk/debian/rules	2011-06-07 17:30:59 UTC (rev 6930)
@@ -1,21 +1,15 @@
 #!/usr/bin/make -f
 # -*- makefile -*-
-# Sample debian/rules that uses debhelper.
-# This file was originally written by Joey Hess and Craig Small.
-# As a special exception, when this file is copied by dh-make into a
-# dh-make output file, you may use that output file without restriction.
-# This special exception was added by Craig Small in version 0.37 of dh-make.
+# debian/rules for mgltools-volume
 
 # Uncomment this to turn on verbose mode.
 #export DH_VERBOSE=1
 
-export DEB_PYTHON_SYSTEM=pycentral
+%:
+	dh $@ --with python2
 
-include /usr/share/cdbs/1/rules/debhelper.mk
-include /usr/share/cdbs/1/class/python-distutils.mk
-#include /usr/share/cdbs/1/rules/simple-patchsys.mk
-
-clean::
+override_dh_clean:
+	dh_clean
 	find . -name CVS -a -type d| xargs -r rm -r
 	rm -rf build build-stamp debian/Pmv
 	find . -name *.png -o -name *.pdb -o -name *.gif -exec file chmod 644 '{}' \;

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