[med-svn] r6947 - in trunk/packages/mgltools: networkeditor/trunk/debian pmv/trunk/debian pmv/trunk/debian/patches pyautodock/trunk/debian pybabel/trunk/debian symserv/trunk/debian utpackages/trunk/debian vision/trunk/debian

Thorsten Alteholz alteholz-guest at alioth.debian.org
Wed Jun 8 18:12:23 UTC 2011 

Author: alteholz-guest
Date: 2011-06-08 18:12:23 +0000 (Wed, 08 Jun 2011)
New Revision: 6947

Added:
   trunk/packages/mgltools/pmv/trunk/debian/mgltools-pmv.lintian-overrides
Modified:
   trunk/packages/mgltools/networkeditor/trunk/debian/rules
   trunk/packages/mgltools/pmv/trunk/debian/patches/fix_shebangs.patch
   trunk/packages/mgltools/pmv/trunk/debian/patches/fix_string_exceptions.patch
   trunk/packages/mgltools/pmv/trunk/debian/patches/series
   trunk/packages/mgltools/pmv/trunk/debian/rules
   trunk/packages/mgltools/pmv/trunk/debian/runPmv.1
   trunk/packages/mgltools/pyautodock/trunk/debian/control
   trunk/packages/mgltools/pyautodock/trunk/debian/rules
   trunk/packages/mgltools/pybabel/trunk/debian/rules
   trunk/packages/mgltools/symserv/trunk/debian/rules
   trunk/packages/mgltools/utpackages/trunk/debian/copyright
   trunk/packages/mgltools/utpackages/trunk/debian/rules
   trunk/packages/mgltools/vision/trunk/debian/rules
Log:
almost no complaints from lintian anymore

Modified: trunk/packages/mgltools/networkeditor/trunk/debian/rules
===================================================================
--- trunk/packages/mgltools/networkeditor/trunk/debian/rules	2011-06-08 15:26:31 UTC (rev 6946)
+++ trunk/packages/mgltools/networkeditor/trunk/debian/rules	2011-06-08 18:12:23 UTC (rev 6947)
@@ -10,5 +10,10 @@
 
 override_dh_clean:
 	dh_clean
-	find . -name CVS -a -type d| xargs -r rm -r
+	find . -name CVS -a -type d| xargs -r rm -rf
 	rm -rf build build-stamp
+
+override_dh_install:
+	dh_install
+	find . -name CVS -a -type d| xargs -r rm -rf
+

Added: trunk/packages/mgltools/pmv/trunk/debian/mgltools-pmv.lintian-overrides
===================================================================
--- trunk/packages/mgltools/pmv/trunk/debian/mgltools-pmv.lintian-overrides	                        (rev 0)
+++ trunk/packages/mgltools/pmv/trunk/debian/mgltools-pmv.lintian-overrides	2011-06-08 18:12:23 UTC (rev 6947)
@@ -0,0 +1,2 @@
+# the license is in debian/copyright but upstream wants to have it there as well
+mgltools-pmv: extra-license-file

Modified: trunk/packages/mgltools/pmv/trunk/debian/patches/fix_shebangs.patch
===================================================================
--- trunk/packages/mgltools/pmv/trunk/debian/patches/fix_shebangs.patch	2011-06-08 15:26:31 UTC (rev 6946)
+++ trunk/packages/mgltools/pmv/trunk/debian/patches/fix_shebangs.patch	2011-06-08 18:12:23 UTC (rev 6947)
@@ -1,3 +1,6 @@
+Description: drop hardcoded python2.4 dependency
+Author: Piotr Ożarowski <piotr at debian.org>
+Last-Update: 2010-08-20
 Index: Pmv-1.5.6~cvs.20100820/Pmv/bin/pmv
 ===================================================================
 --- Pmv-1.5.6~cvs.20100820.orig/Pmv/bin/pmv	2007-10-29 22:26:57.000000000 +0100

Modified: trunk/packages/mgltools/pmv/trunk/debian/patches/fix_string_exceptions.patch
===================================================================
--- trunk/packages/mgltools/pmv/trunk/debian/patches/fix_string_exceptions.patch	2011-06-08 15:26:31 UTC (rev 6946)
+++ trunk/packages/mgltools/pmv/trunk/debian/patches/fix_string_exceptions.patch	2011-06-08 18:12:23 UTC (rev 6947)
@@ -1,3 +1,6 @@
+Description: 'raise exception()' instead of 'raise'
+Author: Piotr Ożarowski <piotr at debian.org>
+Last-Update: 2010-09-12
 Index: mgltools-pmv-1.5.4.cvs.20100912/Pmv/amberCommands.py
 ===================================================================
 --- mgltools-pmv-1.5.4.cvs.20100912.orig/Pmv/amberCommands.py	2007-12-04 20:25:54.000000000 +0100
@@ -2,4 +5,4 @@
 +++ mgltools-pmv-1.5.4.cvs.20100912/Pmv/amberCommands.py	2010-09-12 00:57:10.416550497 +0200
-@@ -1244,7 +1244,7 @@
-         print 'in updateLabels'
+@@ -1257,7 +1257,7 @@
+         #print 'in updateLabels'
          if numConstr==None:

Modified: trunk/packages/mgltools/pmv/trunk/debian/patches/series
===================================================================
--- trunk/packages/mgltools/pmv/trunk/debian/patches/series	2011-06-08 15:26:31 UTC (rev 6946)
+++ trunk/packages/mgltools/pmv/trunk/debian/patches/series	2011-06-08 18:12:23 UTC (rev 6947)
@@ -1,3 +1,3 @@
-#fix_shebangs.patch
-#fix_string_exceptions.patch
-##blenderPmvClientGUI.patch
+fix_shebangs.patch
+fix_string_exceptions.patch
+#blenderPmvClientGUI.patch

Modified: trunk/packages/mgltools/pmv/trunk/debian/rules
===================================================================
--- trunk/packages/mgltools/pmv/trunk/debian/rules	2011-06-08 15:26:31 UTC (rev 6946)
+++ trunk/packages/mgltools/pmv/trunk/debian/rules	2011-06-08 18:12:23 UTC (rev 6947)
@@ -16,3 +16,7 @@
 	find . -name "*.pdb" -exec chmod 644 {} \;
 	sed -i -e 's/# update the widget entr.*$$/# update the widget entryfields/' Pmv/sdCommands.py
 
+override_dh_install:
+	dh_install
+	find . -name runPmv -exec chmod 755 {} \;
+	find . -name *.xpm -o -name *.h -o -name *.bat -o -name *.str -o -name *.fti -o -name *.res -o -name *.dylib | xargs -r chmod -x

Modified: trunk/packages/mgltools/pmv/trunk/debian/runPmv.1
===================================================================
--- trunk/packages/mgltools/pmv/trunk/debian/runPmv.1	2011-06-08 15:26:31 UTC (rev 6946)
+++ trunk/packages/mgltools/pmv/trunk/debian/runPmv.1	2011-06-08 18:12:23 UTC (rev 6947)
@@ -107,9 +107,9 @@
 display protein as ribbon, non protein as sticks and balls
 and color by atom type
 .TP
-pmv -i --dmode sssb --cmode cr myprot.pdb
+pmv \-i \-\-dmode sssb \-\-cmode cr myprot.pdb
 .TP
-pmv -i -m sssb -c cr myprot.pdb
+pmv \-i \-m sssb \-c cr myprot.pdb
 
 
 .SH SEE ALSO

Modified: trunk/packages/mgltools/pyautodock/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/pyautodock/trunk/debian/control	2011-06-08 15:26:31 UTC (rev 6946)
+++ trunk/packages/mgltools/pyautodock/trunk/debian/control	2011-06-08 18:12:23 UTC (rev 6947)
@@ -5,7 +5,7 @@
 DM-Upload-Allowed: yes
 XS-Autobuild: yes
 Uploaders: Steffen Moeller <moeller at debian.org>, Sargis Dallakyan <sargis at scripps.edu>, Thorsten Alteholz <debian at alteholz.de>
-Build-Depends: debhelper (>= 8), python-all-dev (>= 2.6)
+Build-Depends: debhelper (>= 8), python-all (>= 2.6)
 Standards-Version: 3.9.2
 XS-Python-Version: >= 2.5
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/pyautodock/trunk/?rev=0&sc=0

Modified: trunk/packages/mgltools/pyautodock/trunk/debian/rules
===================================================================
--- trunk/packages/mgltools/pyautodock/trunk/debian/rules	2011-06-08 15:26:31 UTC (rev 6946)
+++ trunk/packages/mgltools/pyautodock/trunk/debian/rules	2011-06-08 18:12:23 UTC (rev 6947)
@@ -10,6 +10,11 @@
 
 override_dh_clean:
 	dh_clean
-	find . -name CVS -a -type d| xargs -r rm -r
+	find . -name CVS -a -type d| xargs -r rm -rf
 	find . -name runAdt | xargs -r chmod +x 
 	rm -rf build build-stamp
+
+override_dh_install:
+	dh_install
+	find . -name CVS -a -type d| xargs -r rm -rf
+

Modified: trunk/packages/mgltools/pybabel/trunk/debian/rules
===================================================================
--- trunk/packages/mgltools/pybabel/trunk/debian/rules	2011-06-08 15:26:31 UTC (rev 6946)
+++ trunk/packages/mgltools/pybabel/trunk/debian/rules	2011-06-08 18:12:23 UTC (rev 6947)
@@ -12,3 +12,8 @@
 	dh_clean
 	find . -name CVS -a -type d| xargs -r rm -r
 	rm -rf build build-stamp
+
+override_dh_install:
+	dh_install
+	find . -name CVS -a -type d| xargs -r rm -rf
+

Modified: trunk/packages/mgltools/symserv/trunk/debian/rules
===================================================================
--- trunk/packages/mgltools/symserv/trunk/debian/rules	2011-06-08 15:26:31 UTC (rev 6946)
+++ trunk/packages/mgltools/symserv/trunk/debian/rules	2011-06-08 18:12:23 UTC (rev 6947)
@@ -13,3 +13,8 @@
 	find . -name CVS -a -type d| xargs -r rm -r
 	rm -rf build build-stamp
 	find . -name *.png -o -name *.pdb -o -name *.gif -exec file chmod 644 '{}' \;
+
+override_dh_install:
+	dh_install
+	find . -name CVS -a -type d| xargs -r rm -rf
+

Modified: trunk/packages/mgltools/utpackages/trunk/debian/copyright
===================================================================
--- trunk/packages/mgltools/utpackages/trunk/debian/copyright	2011-06-08 15:26:31 UTC (rev 6946)
+++ trunk/packages/mgltools/utpackages/trunk/debian/copyright	2011-06-08 18:12:23 UTC (rev 6947)
@@ -172,4 +172,4 @@
 
 The Debian packaging is Copyright (C) 2007-2008, 
 Steffen Moeller <moeller at debian.org> 
-and is licensed under the GPL, see '/usr/share/common-licenses/GPL'.
+and is licensed under the GPL, see '/usr/share/common-licenses/GPL-2'.

Modified: trunk/packages/mgltools/utpackages/trunk/debian/rules
===================================================================
--- trunk/packages/mgltools/utpackages/trunk/debian/rules	2011-06-08 15:26:31 UTC (rev 6946)
+++ trunk/packages/mgltools/utpackages/trunk/debian/rules	2011-06-08 18:12:23 UTC (rev 6947)
@@ -15,3 +15,7 @@
 	rm -rf build build-stamp debian/Pmv
 	find . -name *.o -o -name *.so | xargs -r rm
 	find . -name "*.pdb" -exec chmod 644 {} \;
+
+override_dh_install:
+	dh_install
+	find . -name *.rawiv -o -name *.jpg | xargs -r chmod -x

Modified: trunk/packages/mgltools/vision/trunk/debian/rules
===================================================================
--- trunk/packages/mgltools/vision/trunk/debian/rules	2011-06-08 15:26:31 UTC (rev 6946)
+++ trunk/packages/mgltools/vision/trunk/debian/rules	2011-06-08 18:12:23 UTC (rev 6947)
@@ -14,3 +14,8 @@
 	find . -name "runVision" | xargs -r chmod +x 
 	find . -name *.jpg -o -name *.png -o -name *.pdb -o -name *.gif | xargs -r chmod 644
 
+override_dh_install:
+	dh_install
+	find . -name CVS -a -type d| xargs -r rm -rf
+	find . -name "runVision" | xargs -r chmod +x 
+

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