[med-svn] r7055 - in trunk/packages: . snap snap/trunk snap/trunk/debian snap/trunk/debian/source
Steffen Möller
moeller at alioth.debian.org
Thu Jun 16 23:37:57 UTC 2011
Author: moeller
Date: 2011-06-16 23:37:56 +0000 (Thu, 16 Jun 2011)
New Revision: 7055
Added:
trunk/packages/snap/
trunk/packages/snap/trunk/
trunk/packages/snap/trunk/debian/
trunk/packages/snap/trunk/debian/README.Debian
trunk/packages/snap/trunk/debian/changelog
trunk/packages/snap/trunk/debian/compat
trunk/packages/snap/trunk/debian/control
trunk/packages/snap/trunk/debian/copyright
trunk/packages/snap/trunk/debian/docs
trunk/packages/snap/trunk/debian/rules
trunk/packages/snap/trunk/debian/snap.dirs
trunk/packages/snap/trunk/debian/snap.examples
trunk/packages/snap/trunk/debian/snap.install
trunk/packages/snap/trunk/debian/source/
trunk/packages/snap/trunk/debian/source/format
trunk/packages/snap/trunk/debian/watch
Log:
Builds, as committed to experimental.
The package needs testing and man pages, still.
Property changes on: trunk/packages/snap/trunk/debian
___________________________________________________________________
Added: mergeWithUpstream
+ 1
Added: trunk/packages/snap/trunk/debian/README.Debian
===================================================================
--- trunk/packages/snap/trunk/debian/README.Debian (rev 0)
+++ trunk/packages/snap/trunk/debian/README.Debian 2011-06-16 23:37:56 UTC (rev 7055)
@@ -0,0 +1,9 @@
+snap for Debian
+---------------
+
+This is a very first package, uploaded to experimental and the
+Debian Med PPA to attract attention and initial feedback.
+
+The HMM folder is placed in /usr/share/snap.
+
+ -- Steffen Moeller <moeller at debian.org> Fri, 17 Jun 2011 00:52:12 +0200
Added: trunk/packages/snap/trunk/debian/changelog
===================================================================
--- trunk/packages/snap/trunk/debian/changelog (rev 0)
+++ trunk/packages/snap/trunk/debian/changelog 2011-06-16 23:37:56 UTC (rev 7055)
@@ -0,0 +1,5 @@
+snap (2010-07-28-1) experimental; urgency=low
+
+ * Crude initial release, lacking man pages (Closes: #630753).
+
+ -- Steffen Moeller <moeller at debian.org> Fri, 17 Jun 2011 00:52:12 +0200
Added: trunk/packages/snap/trunk/debian/compat
===================================================================
--- trunk/packages/snap/trunk/debian/compat (rev 0)
+++ trunk/packages/snap/trunk/debian/compat 2011-06-16 23:37:56 UTC (rev 7055)
@@ -0,0 +1 @@
+7
Added: trunk/packages/snap/trunk/debian/control
===================================================================
--- trunk/packages/snap/trunk/debian/control (rev 0)
+++ trunk/packages/snap/trunk/debian/control 2011-06-16 23:37:56 UTC (rev 7055)
@@ -0,0 +1,17 @@
+Source: snap
+Section: science
+Priority: extra
+Maintainer: Steffen Moeller <moeller at debian.org>
+Build-Depends: debhelper (>= 7.0.50~)
+Standards-Version: 3.9.2
+Homepage: http://homepage.mac.com/iankorf/
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/snap/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/snap/trunk/
+
+Package: snap
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: location of genes from DNA sequence with hidden markov model
+ SNAP is a general purpose gene finding program suitable for both eukaryotic
+ and prokaryotic genomes. SNAP is an acroynm for Semi-HMM-based Nucleic Acid
+ Parser.
Added: trunk/packages/snap/trunk/debian/copyright
===================================================================
--- trunk/packages/snap/trunk/debian/copyright (rev 0)
+++ trunk/packages/snap/trunk/debian/copyright 2011-06-16 23:37:56 UTC (rev 7055)
@@ -0,0 +1,29 @@
+Format: http://dep.debian.net/deps/dep5
+Upstream-Name: snap
+Source: http://homepage.mac.com/iankorf/snap-2010-07-28.tar.gz
+
+Files: *
+Copyright: 2002-2005 Ian Korf <ifkorf at ucdavis.edu>
+ UC Davis Genome Center, Davis, CA, USA
+License: GPL-2.0+
+
+Files: debian/*
+Copyright: 2011 Steffen Moeller <moeller at debian.org>
+License: GPL-2.0+
+
+License: GPL-2.0+
+ This package is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+ .
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>
+ .
+ On Debian systems, the complete text of the GNU General
+ Public License version 2 can be found in "/usr/share/common-licenses/GPL-2".
Added: trunk/packages/snap/trunk/debian/docs
===================================================================
--- trunk/packages/snap/trunk/debian/docs (rev 0)
+++ trunk/packages/snap/trunk/debian/docs 2011-06-16 23:37:56 UTC (rev 7055)
@@ -0,0 +1 @@
+00README
Added: trunk/packages/snap/trunk/debian/rules
===================================================================
--- trunk/packages/snap/trunk/debian/rules (rev 0)
+++ trunk/packages/snap/trunk/debian/rules 2011-06-16 23:37:56 UTC (rev 7055)
@@ -0,0 +1,13 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+# Sample debian/rules that uses debhelper.
+# This file was originally written by Joey Hess and Craig Small.
+# As a special exception, when this file is copied by dh-make into a
+# dh-make output file, you may use that output file without restriction.
+# This special exception was added by Craig Small in version 0.37 of dh-make.
+
+# Uncomment this to turn on verbose mode.
+#export DH_VERBOSE=1
+
+%:
+ dh $@
Property changes on: trunk/packages/snap/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/snap/trunk/debian/snap.dirs
===================================================================
--- trunk/packages/snap/trunk/debian/snap.dirs (rev 0)
+++ trunk/packages/snap/trunk/debian/snap.dirs 2011-06-16 23:37:56 UTC (rev 7055)
@@ -0,0 +1,2 @@
+usr/bin
+usr/share/snap/Zoe
Added: trunk/packages/snap/trunk/debian/snap.examples
===================================================================
--- trunk/packages/snap/trunk/debian/snap.examples (rev 0)
+++ trunk/packages/snap/trunk/debian/snap.examples 2011-06-16 23:37:56 UTC (rev 7055)
@@ -0,0 +1 @@
+DNA
Added: trunk/packages/snap/trunk/debian/snap.install
===================================================================
--- trunk/packages/snap/trunk/debian/snap.install (rev 0)
+++ trunk/packages/snap/trunk/debian/snap.install 2011-06-16 23:37:56 UTC (rev 7055)
@@ -0,0 +1,13 @@
+exonpairs usr/bin
+hmm-info usr/bin
+forge usr/bin
+fathom usr/bin
+snap usr/bin
+cds-trainer.pl usr/bin
+hmm-assembler.pl usr/bin
+noncoding-trainer.pl usr/bin
+patch-hmm.pl usr/bin
+zff2gff3.pl usr/bin
+HMM usr/share/snap
+Zoe/zoe-loop usr/bin
+Zoe/blosum62 usr/share/snap/Zoe
Added: trunk/packages/snap/trunk/debian/source/format
===================================================================
--- trunk/packages/snap/trunk/debian/source/format (rev 0)
+++ trunk/packages/snap/trunk/debian/source/format 2011-06-16 23:37:56 UTC (rev 7055)
@@ -0,0 +1 @@
+3.0 (quilt)
Added: trunk/packages/snap/trunk/debian/watch
===================================================================
--- trunk/packages/snap/trunk/debian/watch (rev 0)
+++ trunk/packages/snap/trunk/debian/watch 2011-06-16 23:37:56 UTC (rev 7055)
@@ -0,0 +1,2 @@
+version=3
+http://homepage.mac.com/iankorf/snap-([0-9-]+)\.tar\.gz
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