[med-svn] r7057 - trunk/packages/bioperl/trunk/debian

[Charles Plessy]

Author: plessy
Date: 2011-06-17 00:34:49 +0000 (Fri, 17 Jun 2011)
New Revision: 7057

Added:
   trunk/packages/bioperl/trunk/debian/bioperl.install
   trunk/packages/bioperl/trunk/debian/libbio-perl-perl.install
Modified:
   trunk/packages/bioperl/trunk/debian/changelog
   trunk/packages/bioperl/trunk/debian/control
Log:
Split into libbio-perl-perl, as discussed with the Debian Perl team.

See ?\226?\128?\152http://lists.debian.org/debian-perl/2010/02/msg00074.html?\226?\128?\153.


Added: trunk/packages/bioperl/trunk/debian/bioperl.install
===================================================================
--- trunk/packages/bioperl/trunk/debian/bioperl.install	                        (rev 0)
+++ trunk/packages/bioperl/trunk/debian/bioperl.install	2011-06-17 00:34:49 UTC (rev 7057)
@@ -0,0 +1,2 @@
+usr/bin
+usr/share/man/man1

Modified: trunk/packages/bioperl/trunk/debian/changelog
===================================================================
--- trunk/packages/bioperl/trunk/debian/changelog	2011-06-17 00:07:11 UTC (rev 7056)
+++ trunk/packages/bioperl/trunk/debian/changelog	2011-06-17 00:34:49 UTC (rev 7057)
@@ -5,6 +5,8 @@
   * Build using dh and overrides:
     - Use Debhelper 8 (debian/rules, debian/control).
     - Simplified debian/rules.
+  * Split into libbio-perl-perl, as discussed with the Debian Perl team.
+    (debian/control, debian/bioperl.install, debian libbio-perl-perl.install)
 
  -- Charles Plessy <plessy at debian.org>  Mon, 09 May 2011 23:07:30 +0900
 

Modified: trunk/packages/bioperl/trunk/debian/control
===================================================================
--- trunk/packages/bioperl/trunk/debian/control	2011-06-17 00:07:11 UTC (rev 7056)
+++ trunk/packages/bioperl/trunk/debian/control	2011-06-17 00:34:49 UTC (rev 7057)
@@ -53,8 +53,21 @@
 
 Package: bioperl
 Architecture: all
+Depends: libbio-perl-perl ( = ${source:Version} ), ${misc:Depends}, ${perl:Depends}
+Recommends: bioperl-run ( >= 1.6.0 )
+Description: Perl tools for computational molecular biology
+ The Bioperl project is a coordinated effort to collect computational methods
+ routinely used in bioinformatics into a set of standard CPAN-style,
+ well-documented, and freely available Perl modules. It is well-accepted
+ throughout the community and used in many high-profile projects, e.g.,
+ Ensembl.
+
+Package: libbio-perl-perl
+Section: perl
+Architecture: all
 Depends: libio-string-perl, libdata-stag-perl, ${misc:Depends}, ${perl:Depends}
-Recommends: bioperl-run ( >= 1.6.0 ),
+# Temporary workaround as bioperl-run has not been split
+Recommends: bioperl-run ( >= 1.6.0 ) | libbio-perl-run-perl ( >= 1.6.0 ),
 # Recommended in Build.PL
  libace-perl,
  libalgorithm-munkres-perl,
@@ -89,13 +102,13 @@
  libxml-writer-perl,
  libxml-libxml-perl,
  libwww-perl
-Suggests: libmath-random-perl,
+Suggests: bioperl,
+ libmath-random-perl,
 # libmath-random-perl is non-free.
  libxml-sax-expatxs-perl
 # Needed to avoid downloading DTDs.
-Description: Perl tools for computational molecular biology
- The Bioperl project is a coordinated effort to collect computational methods
- routinely used in bioinformatics into a set of standard CPAN-style,
- well-documented, and freely available Perl modules. It is well-accepted
- throughout the community and used in many high-profile projects, e.g., 
- Ensembl.
+Description: BioPerl core perl modules
+ BioPerl is a toolkit of perl modules useful in building bioinformatics
+ solutions in Perl. It is built in an object-oriented manner so that many
+ modules depend on each other to achieve a task. The collection of modules in
+ libbio-perl-perl consist of the core of the functionality of bioperl.

Added: trunk/packages/bioperl/trunk/debian/libbio-perl-perl.install
===================================================================
--- trunk/packages/bioperl/trunk/debian/libbio-perl-perl.install	                        (rev 0)
+++ trunk/packages/bioperl/trunk/debian/libbio-perl-perl.install	2011-06-17 00:34:49 UTC (rev 7057)
@@ -0,0 +1,2 @@
+usr/share/perl5
+usr/share/man/man3