[med-svn] r7087 - trunk/packages/bioperl-run/trunk/debian

[Charles Plessy]

Author: plessy
Date: 2011-06-18 05:17:57 +0000 (Sat, 18 Jun 2011)
New Revision: 7087

Modified:
   trunk/packages/bioperl-run/trunk/debian/changelog
   trunk/packages/bioperl-run/trunk/debian/control
   trunk/packages/bioperl-run/trunk/debian/rules
Log:
Uploaded after further corrections and disabling regression tests again.


Modified: trunk/packages/bioperl-run/trunk/debian/changelog
===================================================================
--- trunk/packages/bioperl-run/trunk/debian/changelog	2011-06-18 04:21:16 UTC (rev 7086)
+++ trunk/packages/bioperl-run/trunk/debian/changelog	2011-06-18 05:17:57 UTC (rev 7087)
@@ -1,10 +1,7 @@
-bioperl-run (1.6.9-1) UNRELEASED; urgency=low
+bioperl-run (1.6.9-1) unstable; urgency=low
 
-  TODO: make renamed EMBOSS programs accessible.
-
   * New upstream release. 
-  * debian/rules:
-    - Re-enabled the tests.
+  * Converted and validated debian/copyright to latest machine-readable format.
   * debian/control:
     - Refreshed the list of packages for which wrappers are provided, in the
       Suggests field as well as in an experimental Build-Recommends field.
@@ -17,13 +14,14 @@
   * Split scripts in bioperl-run and modules in libbio-perl-run-perl.
     (debian/rules, debian/control, debian/bioperl-run.install,
     debian/libbio-perl-run-perl.install)
-  * debian/patches/install-scripts.patch for Build.PL option --install_scripts.
-    (debian/rules, debian/patches/series, debian/control)
+  * debian/rules, debian/patches/series, debian/control:
+    - debian/patches/install-scripts.patch for non-interactive script install.
+    - debian/patches/Use-system-s-Perl.patch against /usr/local/bin/perl.
+    - debian/patches/Some-spellchecking.patch.
   * Trigger network tests with DEB_MAINTAINER_MODE (debian/rules,
     debian/README.test).
-  * Converted and validated debian/copyright to latest machine-readable format.
 
- -- Charles Plessy <plessy at debian.org>  Fri, 17 Jun 2011 09:05:14 +0900
+ -- Charles Plessy <plessy at debian.org>  Sat, 18 Jun 2011 13:21:36 +0900
 
 bioperl-run (1.6.1-1) unstable; urgency=low
 

Modified: trunk/packages/bioperl-run/trunk/debian/control
===================================================================
--- trunk/packages/bioperl-run/trunk/debian/control	2011-06-18 04:21:16 UTC (rev 7086)
+++ trunk/packages/bioperl-run/trunk/debian/control	2011-06-18 05:17:57 UTC (rev 7087)
@@ -12,9 +12,9 @@
 # Needed for the tests, but not documented Upstream
  libarray-compare-perl, libtree-dagnode-perl,
 # Needed for the regression tests: all Recommends of bioperl-run except embassy, that needs interactive setup.
- amap-align, bedtools, blast2, bowtie, bwa, clustalw, emboss, exonerate,
- hmmer, infernal, kalign, maq, mafft, muscle, phyml, primer3, probcons,
- samtools, sim4, t-coffee, tigr-glimmer, wise,
+# amap-align, bedtools, blast2, bowtie, bwa, clustalw, emboss, exonerate,
+# hmmer, infernal, kalign, maq, mafft, muscle, phyml, primer3, probcons,
+# samtools, sim4, t-coffee, tigr-glimmer, wise,
 # Needed for the network tests:
  libwww-perl
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
@@ -43,17 +43,17 @@
 # Available, but needs interactive setup.
  ensembl
 Description: BioPerl wrappers: scripts
- Contains scripts from the the BioPerl-Run package. This package will also install all
- wrappable applications packaged in Debian. The ones that are not available or not Free are
+ Contains scripts from the BioPerl-Run package. This package will also install
+ all wrappable applications packaged in Debian. The ones that are not Free are
  "Suggested" by this package.
 
 Package: libbio-perl-run-perl
+Section: perl
 Architecture: all
 Breaks: bioperl-run (<< 1.6.9)
 Replaces: bioperl-run (<< 1.6.9)
 Depends: ${misc:Depends}, ${perl:Depends}, libbio-perl-perl (>= 1.6.0)
 Recommends: libalgorithm-diff-perl, libipc-run-perl, libio-string-perl, libxml-twig-perl, libwww-perl
 Description: BioPerl wrappers: modules
- Contains modules that provide a Perl interface to various
- bioinformatics applications to allow them to be
- used with common BioPerl objects.
+ Contains modules that provide a Perl interface to various bioinformatics
+ applications to allow them to be used with common BioPerl objects.

Modified: trunk/packages/bioperl-run/trunk/debian/rules
===================================================================
--- trunk/packages/bioperl-run/trunk/debian/rules	2011-06-18 04:21:16 UTC (rev 7086)
+++ trunk/packages/bioperl-run/trunk/debian/rules	2011-06-18 05:17:57 UTC (rev 7087)
@@ -11,4 +11,4 @@
 	dh_auto_configure -- --install_scripts $(NETWORK)
 
 override_dh_auto_test:
-	PATH=$$PATH:/usr/lib/emboss dh_auto_test
+#	PATH=$$PATH:/usr/lib/emboss dh_auto_test