[med-svn] r7155 - in trunk/packages/kalign/tags: . 1:2.03+20110620-1/debian
Charles Plessy
plessy at alioth.debian.org
Sat Jun 25 08:29:03 UTC 2011
Author: plessy
Date: 2011-06-25 08:29:03 +0000 (Sat, 25 Jun 2011)
New Revision: 7155
Added:
trunk/packages/kalign/tags/1:2.03+20110620-1/
trunk/packages/kalign/tags/1:2.03+20110620-1/debian/changelog
trunk/packages/kalign/tags/1:2.03+20110620-1/debian/compat
trunk/packages/kalign/tags/1:2.03+20110620-1/debian/control
trunk/packages/kalign/tags/1:2.03+20110620-1/debian/copyright
Removed:
trunk/packages/kalign/tags/1:2.03+20110620-1/debian/changelog
trunk/packages/kalign/tags/1:2.03+20110620-1/debian/compat
trunk/packages/kalign/tags/1:2.03+20110620-1/debian/control
trunk/packages/kalign/tags/1:2.03+20110620-1/debian/copyright
Log:
[svn-buildpackage] Tagging kalign 1:2.03+20110620-1
Deleted: trunk/packages/kalign/tags/1:2.03+20110620-1/debian/changelog
===================================================================
--- trunk/packages/kalign/trunk/debian/changelog 2011-06-24 06:02:17 UTC (rev 7149)
+++ trunk/packages/kalign/tags/1:2.03+20110620-1/debian/changelog 2011-06-25 08:29:03 UTC (rev 7155)
@@ -1,80 +0,0 @@
-kalign (2.04-3) UNRELEASED; urgency=low
-
- * Collected informations about Upstream in ‘debian/upstream-metadata.yaml’.
-
- -- Charles Plessy <plessy at debian.org> Wed, 02 Dec 2009 13:22:04 +0900
-
-kalign (2.04-2) unstable; urgency=low
-
- [ David Paleino ]
- * Removed myself from Uploaders
-
- [ Andreas Tille ]
- * debian/control:
- - Standards-Version: 3.8.3
- - debhelper (>= 7.1) to use override facility
- * debian/rules:
- - removed code to create manpage - just keep the created one
- - short rules file using dh
- * debian/watch:
- - deactivated; upstream does not seem to respond to our request
- to enable versioned tarballs - so the watch file makes no sense
- Closes: #456479
- * Applied patch to enable bash completion. Thanks to David Paleino
- <d.paleino at gmail.com>
- Closes: #446047
-
- -- Andreas Tille <tille at debian.org> Tue, 06 Oct 2009 16:21:45 +0200
-
-kalign (2.04-1) unstable; urgency=low
-
- * New upstream release.
- * debian/copyright made machine-readable.
- * debian/rules: replaced deprecated dh_clean -k by dh_prep.
- * debian/control:
- - Updated my email address (debian/control).
- - Checked compliance with Policy 3.8.0 (no changes needed).
- - Using debhelper 7 (also in debian/compat).
- - Upadated description and moved reference to debian/reference.
- * debian/kalign.1*: updated the manual pages.
-
- -- Charles Plessy <plessy at debian.org> Thu, 26 Feb 2009 00:19:44 +0900
-
-kalign (2.03-2) unstable; urgency=low
-
- [ Charles Plessy ]
- * debian/control:
- - Add Subversion repository URL to debian/control.
- - Moved the Homepage: field out from the package's description.
- - Enhances: t-coffee.
-
- [ David Paleino ]
- * debian/kalign.1 added - manpages are now statically generated
- * debian/control:
- - B-D updated (see above)
- - added myself to Uploaders
- - moved XS-Vcs-* fields to Vcs-*
- * debian/rules:
- - reflecting static build of manpages
- - minor changes
- * Updated to Standards-Version 3.7.3 (no changes needed)
-
- [ Andreas Tille ]
- * Added myself to Uploaders
-
- -- Andreas Tille <tille at debian.org> Tue, 18 Mar 2008 09:54:17 +0100
-
-kalign (2.03-1) unstable; urgency=low
-
- * New upstream release.
- * Mended the watch file.
- * Updated the manpage.
-
- -- Charles Plessy <charles-debian-nospam at plessy.org> Wed, 21 Feb 2007 09:07:33 +0900
-
-kalign (1.04-1) unstable; urgency=low
-
- * Initial release Closes: #365344
-
- -- Charles Plessy <charles-debian-nospam at plessy.org> Sat, 29 Apr 2006 23:02:57 +0900
-
Copied: trunk/packages/kalign/tags/1:2.03+20110620-1/debian/changelog (from rev 7154, trunk/packages/kalign/trunk/debian/changelog)
===================================================================
--- trunk/packages/kalign/tags/1:2.03+20110620-1/debian/changelog (rev 0)
+++ trunk/packages/kalign/tags/1:2.03+20110620-1/debian/changelog 2011-06-25 08:29:03 UTC (rev 7155)
@@ -0,0 +1,89 @@
+kalign (1:2.03+20110620-1) unstable; urgency=low
+
+ * New upstream release.
+ Using 2.04 as a version number was a mistake of mine, it should have been
+ called 2.03+20081031 as Upstream sometimes updates the source archive
+ ‘current.tar.gz’ without incrementing the version number.
+ * Collected information about Upstream in ‘debian/upstream-metadata.yaml’.
+ * Using Debhelper 8 (debian/compat, debian/control).
+ * Corrected VCS information in debian/control.
+ * Enhances: bioperl-run, that has a kalign wrapper (debian/control).
+ * Incremented Standards-Version to reflect conformance with Policy 3.9.2.
+ (debian/control, no changes needed).
+
+ -- Charles Plessy <plessy at debian.org> Sat, 25 Jun 2011 17:23:01 +0900
+
+kalign (2.04-2) unstable; urgency=low
+
+ [ David Paleino ]
+ * Removed myself from Uploaders
+
+ [ Andreas Tille ]
+ * debian/control:
+ - Standards-Version: 3.8.3
+ - debhelper (>= 7.1) to use override facility
+ * debian/rules:
+ - removed code to create manpage - just keep the created one
+ - short rules file using dh
+ * debian/watch:
+ - deactivated; upstream does not seem to respond to our request
+ to enable versioned tarballs - so the watch file makes no sense
+ Closes: #456479
+ * Applied patch to enable bash completion. Thanks to David Paleino
+ <d.paleino at gmail.com>
+ Closes: #446047
+
+ -- Andreas Tille <tille at debian.org> Tue, 06 Oct 2009 16:21:45 +0200
+
+kalign (2.04-1) unstable; urgency=low
+
+ * New upstream release.
+ * debian/copyright made machine-readable.
+ * debian/rules: replaced deprecated dh_clean -k by dh_prep.
+ * debian/control:
+ - Updated my email address (debian/control).
+ - Checked compliance with Policy 3.8.0 (no changes needed).
+ - Using debhelper 7 (also in debian/compat).
+ - Upadated description and moved reference to debian/reference.
+ * debian/kalign.1*: updated the manual pages.
+
+ -- Charles Plessy <plessy at debian.org> Thu, 26 Feb 2009 00:19:44 +0900
+
+kalign (2.03-2) unstable; urgency=low
+
+ [ Charles Plessy ]
+ * debian/control:
+ - Add Subversion repository URL to debian/control.
+ - Moved the Homepage: field out from the package's description.
+ - Enhances: t-coffee.
+
+ [ David Paleino ]
+ * debian/kalign.1 added - manpages are now statically generated
+ * debian/control:
+ - B-D updated (see above)
+ - added myself to Uploaders
+ - moved XS-Vcs-* fields to Vcs-*
+ * debian/rules:
+ - reflecting static build of manpages
+ - minor changes
+ * Updated to Standards-Version 3.7.3 (no changes needed)
+
+ [ Andreas Tille ]
+ * Added myself to Uploaders
+
+ -- Andreas Tille <tille at debian.org> Tue, 18 Mar 2008 09:54:17 +0100
+
+kalign (2.03-1) unstable; urgency=low
+
+ * New upstream release.
+ * Mended the watch file.
+ * Updated the manpage.
+
+ -- Charles Plessy <charles-debian-nospam at plessy.org> Wed, 21 Feb 2007 09:07:33 +0900
+
+kalign (1.04-1) unstable; urgency=low
+
+ * Initial release Closes: #365344
+
+ -- Charles Plessy <charles-debian-nospam at plessy.org> Sat, 29 Apr 2006 23:02:57 +0900
+
Deleted: trunk/packages/kalign/tags/1:2.03+20110620-1/debian/compat
===================================================================
--- trunk/packages/kalign/trunk/debian/compat 2011-06-24 06:02:17 UTC (rev 7149)
+++ trunk/packages/kalign/tags/1:2.03+20110620-1/debian/compat 2011-06-25 08:29:03 UTC (rev 7155)
@@ -1 +0,0 @@
-7
Copied: trunk/packages/kalign/tags/1:2.03+20110620-1/debian/compat (from rev 7152, trunk/packages/kalign/trunk/debian/compat)
===================================================================
--- trunk/packages/kalign/tags/1:2.03+20110620-1/debian/compat (rev 0)
+++ trunk/packages/kalign/tags/1:2.03+20110620-1/debian/compat 2011-06-25 08:29:03 UTC (rev 7155)
@@ -0,0 +1 @@
+8
Deleted: trunk/packages/kalign/tags/1:2.03+20110620-1/debian/control
===================================================================
--- trunk/packages/kalign/trunk/debian/control 2011-06-24 06:02:17 UTC (rev 7149)
+++ trunk/packages/kalign/tags/1:2.03+20110620-1/debian/control 2011-06-25 08:29:03 UTC (rev 7155)
@@ -1,25 +0,0 @@
-Source: kalign
-Section: science
-Priority: optional
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-DM-Upload-Allowed: yes
-Uploaders: Charles Plessy <plessy at debian.org>,
- Andreas Tille <tille at debian.org>
-Build-Depends: debhelper (>= 7.1)
-Standards-Version: 3.8.3
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/kalign/trunk/?rev=0&sc=0
-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/kalign/trunk/
-Homepage: http://msa.cgb.ki.se
-
-Package: kalign
-Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}
-Enhances: t-coffee
-Description: Global and progressive multiple sequence alignment
- Kalign is a command line tool to perform multiple alignment of
- biological sequences. It employs the Muth-Manber string-matching
- algorithm, to improve both the accuracy and speed of the alignment.
- It uses global, progressive alignment approach, enriched by employing
- an approximate string-matching algorithm to calculate sequence
- distances and by incorporating local matches into the otherwise global
- alignment.
Copied: trunk/packages/kalign/tags/1:2.03+20110620-1/debian/control (from rev 7154, trunk/packages/kalign/trunk/debian/control)
===================================================================
--- trunk/packages/kalign/tags/1:2.03+20110620-1/debian/control (rev 0)
+++ trunk/packages/kalign/tags/1:2.03+20110620-1/debian/control 2011-06-25 08:29:03 UTC (rev 7155)
@@ -0,0 +1,25 @@
+Source: kalign
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+DM-Upload-Allowed: yes
+Uploaders: Charles Plessy <plessy at debian.org>,
+ Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 8)
+Standards-Version: 3.9.2
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/kalign/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/kalign/trunk/
+Homepage: http://msa.cgb.ki.se
+
+Package: kalign
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Enhances: t-coffee, bioperl-run
+Description: Global and progressive multiple sequence alignment
+ Kalign is a command line tool to perform multiple alignment of
+ biological sequences. It employs the Muth-Manber string-matching
+ algorithm, to improve both the accuracy and speed of the alignment.
+ It uses global, progressive alignment approach, enriched by employing
+ an approximate string-matching algorithm to calculate sequence
+ distances and by incorporating local matches into the otherwise global
+ alignment.
Deleted: trunk/packages/kalign/tags/1:2.03+20110620-1/debian/copyright
===================================================================
--- trunk/packages/kalign/trunk/debian/copyright 2011-06-24 06:02:17 UTC (rev 7149)
+++ trunk/packages/kalign/tags/1:2.03+20110620-1/debian/copyright 2011-06-25 08:29:03 UTC (rev 7155)
@@ -1,47 +0,0 @@
-Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat?action=recall&rev=440
-Upstream-Name: Kalign
-Upstream-Maintainer: Timo Lassmann <timolassmann at gmail.com>
-Upstream-Source: http://msa.cgb.ki.se/downloads/kalign/current.tar.gz
-
-Files : *
-Copyright: © 2004–2008 Timo Lassmann <timolassmann at gmail.com>
-License: GPL-2+
- This package is free software; you can redistribute it and/or modify
- it under the terms of the GNU General Public License as published by
- the Free Software Foundation; either version 2 of the License, or
- (at your option) any later version.
- .
- This package is distributed in the hope that it will be useful,
- but WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- GNU General Public License for more details.
- .
- You should have received a copy of the GNU General Public License
- along with this package; if not, write to the Free Software
- Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-X-Debian-Comment: On Debian systems, the complete text of the GNU General
- Public License version 2 can be found in `/usr/share/common-licenses/GPL-2'.
-
-Files: COPYING
-Copyright: © 1989, 1991 Free Software Foundation, Inc.
-License: changing it is not allowed.
- Everyone is permitted to copy and distribute verbatim copies
- of this license document, but changing it is not allowed.
-
-Files: configure
-Copyright: © 2003 Free Software Foundation, Inc.
-License: unlimited permission to copy, distribute and modify it.
- This configure script is free software; the Free Software Foundation
- gives unlimited permission to copy, distribute and modify it.
-
-Files: debian/*
-Copyright: © 2006–2009 Charles Plessy <plessy at debian.org>
- © 2008 David Paleino <d.paleino at gmail.com>
- © 2008 Andreas Tille <tille at debian.org>
-Licence: As if in public domain.
- The packaging work is in the public domain unless stated otherwise.
-
-Files: debian/kalign.1*
-Copyright: © 2006–2009 Charles Plessy <plessy at debian.org>
-License: Same as kalign.
- (See above)
Copied: trunk/packages/kalign/tags/1:2.03+20110620-1/debian/copyright (from rev 7151, trunk/packages/kalign/trunk/debian/copyright)
===================================================================
--- trunk/packages/kalign/tags/1:2.03+20110620-1/debian/copyright (rev 0)
+++ trunk/packages/kalign/tags/1:2.03+20110620-1/debian/copyright 2011-06-25 08:29:03 UTC (rev 7155)
@@ -0,0 +1,45 @@
+Format: http://dep.debian.net/deps/dep5/
+Source: http://msa.cgb.ki.se/downloads/kalign/current.tar.gz
+
+Files : *
+Copyright: © 2004–2008 Timo Lassmann <timolassmann at gmail.com>
+License: GPL-2+
+ This package is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+ .
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this package; if not, write to the Free Software
+ Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+Comment: On Debian systems, the complete text of the GNU General Public
+ License version 2 can be found in ‘/usr/share/common-licenses/GPL-2’.
+
+Files: COPYING
+Copyright: © 1989, 1991 Free Software Foundation, Inc.
+License: no-change
+ Everyone is permitted to copy and distribute verbatim copies
+ of this license document, but changing it is not allowed.
+
+Files: configure
+Copyright: © 2003 Free Software Foundation, Inc.
+License: unlimited-permission
+ This configure script is free software; the Free Software Foundation
+ gives unlimited permission to copy, distribute and modify it.
+
+Files: debian/*
+Copyright: © 2006–2011 Charles Plessy <plessy at debian.org>
+ © 2008 David Paleino <d.paleino at gmail.com>
+ © 2008 Andreas Tille <tille at debian.org>
+Licence: as-public-domain.
+ The packaging work is in the public domain unless stated otherwise.
+
+Files: debian/kalign.1*
+Copyright: © 2006–2009 Charles Plessy <plessy at debian.org>
+License: same-as-kalign.
+ (See above)
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