[med-svn] r7167 - trunk/packages/phyml/trunk/debian

[Charles Plessy]

Author: plessy
Date: 2011-06-26 04:27:35 +0000 (Sun, 26 Jun 2011)
New Revision: 7167

Modified:
   trunk/packages/phyml/trunk/debian/changelog
   trunk/packages/phyml/trunk/debian/control
   trunk/packages/phyml/trunk/debian/rules
Log:
Incorporated PhyTime and uploaded.


Modified: trunk/packages/phyml/trunk/debian/changelog
===================================================================
--- trunk/packages/phyml/trunk/debian/changelog	2011-06-26 02:40:19 UTC (rev 7166)
+++ trunk/packages/phyml/trunk/debian/changelog	2011-06-26 04:27:35 UTC (rev 7167)
@@ -1,4 +1,4 @@
-phyml (2:20110526-1) UNRELEASED; urgency=low
+phyml (2:20110526-1) unstable; urgency=low
 
   * New upstream version.
   * debian/control:
@@ -7,8 +7,9 @@
     - Enhances bioperl-run (that has a PhyML wrapper).
     - Standards-Version incremented to reflect compliance with Policy 3.9.2.
   * Added build-arch and build-indep targets to debian/rules.
+  * Build and distribute PhyTime (debian/rules, debian/control).
 
- -- Charles Plessy <plessy at debian.org>  Sun, 26 Jun 2011 11:35:27 +0900
+ -- Charles Plessy <plessy at debian.org>  Sun, 26 Jun 2011 12:14:54 +0900
 
 phyml (2:20100720-1) unstable; urgency=low
 

Modified: trunk/packages/phyml/trunk/debian/control
===================================================================
--- trunk/packages/phyml/trunk/debian/control	2011-06-26 02:40:19 UTC (rev 7166)
+++ trunk/packages/phyml/trunk/debian/control	2011-06-26 04:27:35 UTC (rev 7167)
@@ -35,3 +35,5 @@
  they are not numerous. With most standard personal computers, the “comfort
  zone” for PhyML generally lies around 3 to 500 sequences less than 2,000
  character long.
+ .
+ This pakcage also includes PhyTime.

Modified: trunk/packages/phyml/trunk/debian/rules
===================================================================
--- trunk/packages/phyml/trunk/debian/rules	2011-06-26 02:40:19 UTC (rev 7166)
+++ trunk/packages/phyml/trunk/debian/rules	2011-06-26 04:27:35 UTC (rev 7167)
@@ -18,33 +18,36 @@
 #    MAKEFLAGS += -j$(NUMJOBS)
 #endif
 
+build:
+	dh build
 
-src/Makefile:
-	aclocal ; autoconf -f ; automake -f ; ./configure --prefix=/usr
-
-build: src/Makefile build-stamp
-build-stamp:
-	dh_testdir
-	$(MAKE) CFLAGS="$(CFLAGS)"
-	touch build-stamp
-
 clean:
 	dh clean
 
-install: build
+binary-indep:
+	dh binary-indep
+binary-arch: 
+	dh binary-arch
+
+override_dh_auto_configure:
+override_dh_auto_build:
 	dh_testdir
-	dh_testroot
-	dh_prep
-	dh_installdirs
+	aclocal ; autoconf -f ; automake -f ; ./configure --prefix=/usr
+	$(MAKE) CFLAGS="$(CFLAGS)"
 	$(MAKE) prefix=`pwd`/debian/`dh_listpackages`/usr install
+	$(MAKE) distclean
+	aclocal ; autoconf -f ; automake -f ; ./configure --prefix=/usr --enable-phytime
+	$(MAKE) CFLAGS="$(CFLAGS)"
+	$(MAKE) prefix=`pwd`/debian/`dh_listpackages`/usr install
+	touch build-stamp
+override_dh_auto_install:
 
-binary-indep: build install
-binary-arch: build install
-	dh binary-arch
+override_dh_prep:
+	dh_prep -X debian/phyml
 
 binary: binary-indep binary-arch
 
 build-arch: build
 build-indep:
 
-.PHONY: build build-arch build-indep clean binary-indep binary-arch binary install
+.PHONY: build-arch build-indep clean binary-indep binary-arch binary