[med-svn] [SCM] sra-sdk branch, master, updated. debian/2.0.1-1-3-g204a2ca

Charles Plessy plessy at debian.org
Sun Jun 26 05:30:51 UTC 2011 

The following commit has been merged in the master branch:
commit 204a2ca14e77600b62737ab044066dac3e4173a2
Author: Charles Plessy <plessy at debian.org>
Date:   Sun Jun 26 14:30:10 2011 +0900

    New upstream release.

diff --git a/debian/changelog b/debian/changelog
index 9ff30d6..999f28e 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+sra-sdk (2.1.0-1) UNRELEASED; urgency=low
+
+  * New upstream release (Closes: #627861).
+
+ -- Charles Plessy <plessy at debian.org>  Sun, 26 Jun 2011 12:11:18 +0900
+
 sra-sdk (2.0.1-1) unstable; urgency=low
 
   * Initial release (Closes: #610603).
diff --git a/debian/control b/debian/control
index bcd6009..c1eeb8d 100644
--- a/debian/control
+++ b/debian/control
@@ -51,6 +51,7 @@ Description: Libraries for the SRA Toolkit
   libksrch              # search algorithm library
   libkxfs               # XML to filesystem library
   libkxml               # XML container support library
+  libload               # loader tool utility library
   libsra-schema         # weak-linked sra schema
   libsradb              # API for accessing sra
   libsrapath            # weak-link stubs for srapath
diff --git a/debian/copyright b/debian/copyright
index 558719d..82b7a5c 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -1,5 +1,5 @@
 Format: http://dep.debian.net/deps/dep5/
-Source: http://trace.ncbi.nlm.nih.gov/Traces/sra/static/sra_sdk-2.0.1.tar.gz
+Source: http://trace.ncbi.nlm.nih.gov/Traces/sra/static/sra_sdk-2.1.0.tar.gz
 
 Files: *
 Copyright: none claimed
diff --git a/debian/rules b/debian/rules
index 1c1d439..a261000 100755
--- a/debian/rules
+++ b/debian/rules
@@ -15,11 +15,6 @@ override_dh_auto_test:
 override_dh_prep:
 	dh_prep -X debian/tmp
 
-# Remove empty library from /usr/bin
-override_dh_install:
-	dh_install
-	rmdir $(CURDIR)/debian/sra-toolkit/usr/bin/ncbi
-
 # Temporary correction as long as libsra-schema is weak-linked.
 override_dh_link:
 	mv $(CURDIR)/debian/sra-toolkit-libs-dev/usr/lib/libsra-schema.so $(CURDIR)/debian/sra-toolkit-libs0/usr/lib/
diff --git a/debian/sra-toolkit-libs0.symbols b/debian/sra-toolkit-libs0.symbols
index c04ff50..08a4959 100644
--- a/debian/sra-toolkit-libs0.symbols
+++ b/debian/sra-toolkit-libs0.symbols
@@ -23,7 +23,7 @@ libkdb.so.1 sra-toolkit-libs0 #MINVER#
  KColumnBlobRelease at Base 2.0.1
  KColumnBlobValidate at Base 2.0.1
  KColumnByteOrder at Base 2.0.1
- KColumnCheckMD5 at Base 2.0.1
+#MISSING: 2.1.0-1# KColumnCheckMD5 at Base 2.0.1
  KColumnConsistencyCheck at Base 2.0.1
  KColumnDataOpenRead at Base 2.0.1
  KColumnDataRead at Base 2.0.1
@@ -252,6 +252,7 @@ libkfs.so.1 sra-toolkit-libs0 #MINVER#
  KArrayFileDimExtents at Base 2.0.1
  KArrayFileDimensionality at Base 2.0.1
  KArrayFileElementSize at Base 2.0.1
+ KArrayFileGetMeta at Base 2.1.0-1
  KArrayFileInit at Base 2.0.1
  KArrayFileRead at Base 2.0.1
  KArrayFileRelease at Base 2.0.1
@@ -423,6 +424,7 @@ libkfs.so.1 sra-toolkit-libs0 #MINVER#
  KMMapAddRef at Base 2.0.1
  KMMapAddrRead at Base 2.0.1
  KMMapAddrUpdate at Base 2.0.1
+ KMMapMake at Base 2.1.0-1
  KMMapMakeMaxRead at Base 2.0.1
  KMMapMakeMaxUpdate at Base 2.0.1
  KMMapMakeRead at Base 2.0.1
@@ -430,9 +432,12 @@ libkfs.so.1 sra-toolkit-libs0 #MINVER#
  KMMapMakeRgnUpdate at Base 2.0.1
  KMMapMakeUpdate at Base 2.0.1
  KMMapPosition at Base 2.0.1
+ KMMapROSys at Base 2.1.0-1
+ KMMapRWSys at Base 2.1.0-1
  KMMapRelease at Base 2.0.1
  KMMapReposition at Base 2.0.1
  KMMapSize at Base 2.0.1
+ KMMapUnmap at Base 2.1.0-1
  KMemBankAddRef at Base 2.0.1
  KMemBankAlloc at Base 2.0.1
  KMemBankFree at Base 2.0.1
@@ -568,6 +573,9 @@ libklib.so.1 sra-toolkit-libs0 #MINVER#
  G_out_handler at Base 2.0.1
  GetRCContextIdxText at Base 2.0.1
  GetRCContextText at Base 2.0.1
+ GetRCFilename at Base 2.1.0-1
+ GetRCFunction at Base 2.1.0-1
+ GetRCLineno at Base 2.1.0-1
  GetRCModuleIdxText at Base 2.0.1
  GetRCModuleText at Base 2.0.1
  GetRCObjectIdxText at Base 2.0.1
@@ -593,6 +601,7 @@ libklib.so.1 sra-toolkit-libs0 #MINVER#
  KLogDataGet at Base 2.0.1
  KLogDefaultFormatter at Base 2.0.1
  KLogFmtDataGet at Base 2.0.1
+ KLogFmtFlagsGet at Base 2.1.0-1
  KLogFmtFlagsSet at Base 2.0.1
  KLogFmtHandlerGet at Base 2.0.1
  KLogFmtHandlerSet at Base 2.0.1
@@ -613,6 +622,7 @@ libklib.so.1 sra-toolkit-libs0 #MINVER#
  KLogLevelSet at Base 2.0.1
  KLogLibDataGet at Base 2.0.1
  KLogLibFmtDataGet at Base 2.0.1
+ KLogLibFmtFlagsGet at Base 2.1.0-1
  KLogLibFmtFlagsSet at Base 2.0.1
  KLogLibFmtHandlerGet at Base 2.0.1
  KLogLibFmtHandlerSet at Base 2.0.1
@@ -645,6 +655,7 @@ libklib.so.1 sra-toolkit-libs0 #MINVER#
  KRefcountWhack at Base 2.0.1
  KStsDataGet at Base 2.0.1
  KStsFmtDataGet at Base 2.0.1
+ KStsFmtFlagsGet at Base 2.1.0-1
  KStsFmtFlagsSet at Base 2.0.1
  KStsFmtHandlerGet at Base 2.0.1
  KStsFmtHandlerSet at Base 2.0.1
@@ -660,6 +671,7 @@ libklib.so.1 sra-toolkit-libs0 #MINVER#
  KStsLevelSet at Base 2.0.1
  KStsLibDataGet at Base 2.0.1
  KStsLibFmtDataGet at Base 2.0.1
+ KStsLibFmtFlagsGet at Base 2.1.0-1
  KStsLibFmtFlagsSet at Base 2.0.1
  KStsLibFmtHandlerGet at Base 2.0.1
  KStsLibFmtHandlerSet at Base 2.0.1
@@ -764,6 +776,18 @@ libklib.so.1 sra-toolkit-libs0 #MINVER#
  RCObjectStrings at Base 2.0.1
  RCStateStrings at Base 2.0.1
  RCTargetStrings at Base 2.0.1
+ SHA1StateAppend at Base 2.1.0-1
+ SHA1StateFinish at Base 2.1.0-1
+ SHA1StateInit at Base 2.1.0-1
+ SHA256StateAppend at Base 2.1.0-1
+ SHA256StateFinish at Base 2.1.0-1
+ SHA256StateInit at Base 2.1.0-1
+ SHA384StateAppend at Base 2.1.0-1
+ SHA384StateFinish at Base 2.1.0-1
+ SHA384StateInit at Base 2.1.0-1
+ SHA512StateAppend at Base 2.1.0-1
+ SHA512StateFinish at Base 2.1.0-1
+ SHA512StateInit at Base 2.1.0-1
  SLListDoUntil at Base 2.0.1
  SLListFindFirst at Base 2.0.1
  SLListForEach at Base 2.0.1
@@ -772,6 +796,7 @@ libklib.so.1 sra-toolkit-libs0 #MINVER#
  SLListPushTail at Base 2.0.1
  SLListUnlink at Base 2.0.1
  SLListWhack at Base 2.0.1
+ SetRCFileFuncLine at Base 2.1.0-1
  StringCaseCompare at Base 2.0.1
  StringCaseEqual at Base 2.0.1
  StringCompare at Base 2.0.1
@@ -853,7 +878,9 @@ libklib.so.1 sra-toolkit-libs0 #MINVER#
  iso8859_string_size at Base 2.0.1
  iso8859_utf32 at Base 2.0.1
  kbsearch at Base 2.0.1
- knprintf at Base 2.0.1
+ kfprintf at Base 2.1.0-1
+#MISSING: 2.1.0-1# knprintf at Base 2.0.1
+ kprintf at Base 2.1.0-1
  ksort at Base 2.0.1
  pLogErr at Base 2.0.1
  pLogLibErr at Base 2.0.1
@@ -900,7 +927,9 @@ libklib.so.1 sra-toolkit-libs0 #MINVER#
  vLogLibErr at Base 2.0.1
  vLogLibMsg at Base 2.0.1
  vLogMsg at Base 2.0.1
- vknprintf at Base 2.0.1
+ vkfprintf at Base 2.1.0-1
+#MISSING: 2.1.0-1# vknprintf at Base 2.0.1
+ vkprintf at Base 2.1.0-1
  vlen_decode1 at Base 2.0.1
  vlen_decode at Base 2.0.1
  vlen_decodeU1 at Base 2.0.1
@@ -1105,6 +1134,7 @@ libkxml.so.1 sra-toolkit-libs0 #MINVER#
  KXMLDocVOpenNodesetRead at Base 2.0.1
  KXMLMgrAddRef at Base 2.0.1
  KXMLMgrMakeDocRead at Base 2.0.1
+ KXMLMgrMakeDocReadFromMemory at Base 2.1.0-1
  KXMLMgrMakeRead at Base 2.0.1
  KXMLMgrRelease at Base 2.0.1
  KXMLNodeCountChildNodes at Base 2.0.1
@@ -1157,6 +1187,7 @@ libsradb.so.3 sra-toolkit-libs0 #MINVER#
  SRAColumnGetRange at Base 2.0.1
  SRAColumnRead at Base 2.0.1
  SRAColumnRelease at Base 2.0.1
+ SRAColumnWhack at Base 2.1.0-1
  SRAMgrAddRef at Base 2.0.1
  SRAMgrAttach at Base 2.0.1
  SRAMgrFlushRepPath at Base 2.0.1
@@ -1704,6 +1735,7 @@ libvdb.so.2 sra-toolkit-libs0 #MINVER#
  VSchemaListLegacyTables at Base 2.0.1
  VSchemaMake at Base 2.0.1
  VSchemaMakeIntrinsic at Base 2.0.1
+ VSchemaMakeRuntimeTable at Base 2.1.0-1
  VSchemaParseFile at Base 2.0.1
  VSchemaParseText at Base 2.0.1
  VSchemaParseTextCallback at Base 2.0.1
@@ -1711,6 +1743,20 @@ libvdb.so.2 sra-toolkit-libs0 #MINVER#
  VSchemaResolveFmtdecl at Base 2.0.1
  VSchemaResolveTypedecl at Base 2.0.1
  VSchemaResolveTypespec at Base 2.0.1
+ VSchemaRuntimeTableAddAsciiColumn at Base 2.1.0-1
+ VSchemaRuntimeTableAddBooleanColumn at Base 2.1.0-1
+ VSchemaRuntimeTableAddColumn at Base 2.1.0-1
+ VSchemaRuntimeTableAddFloatColumn at Base 2.1.0-1
+ VSchemaRuntimeTableAddIntegerColumn at Base 2.1.0-1
+ VSchemaRuntimeTableAddUnicodeColumn at Base 2.1.0-1
+ VSchemaRuntimeTableClose at Base 2.1.0-1
+ VSchemaRuntimeTableCommit at Base 2.1.0-1
+ VSchemaRuntimeTableVAddAsciiColumn at Base 2.1.0-1
+ VSchemaRuntimeTableVAddBooleanColumn at Base 2.1.0-1
+ VSchemaRuntimeTableVAddColumn at Base 2.1.0-1
+ VSchemaRuntimeTableVAddFloatColumn at Base 2.1.0-1
+ VSchemaRuntimeTableVAddIntegerColumn at Base 2.1.0-1
+ VSchemaRuntimeTableVAddUnicodeColumn at Base 2.1.0-1
  VSchemaSever at Base 2.0.1
  VSchemaToText at Base 2.0.1
  VSchemaTypeMark at Base 2.0.1
@@ -2225,6 +2271,7 @@ libwsradb.so.3 sra-toolkit-libs0 #MINVER#
  SRAColumnGetRange at Base 2.0.1
  SRAColumnRead at Base 2.0.1
  SRAColumnRelease at Base 2.0.1
+ SRAColumnWhack at Base 2.1.0-1
  SRAMgrAddRef at Base 2.0.1
  SRAMgrAttach at Base 2.0.1
  SRAMgrCreateTable at Base 2.0.1
@@ -2759,6 +2806,7 @@ libwvdb.so.2 sra-toolkit-libs0 #MINVER#
  VSchemaListLegacyTables at Base 2.0.1
  VSchemaMake at Base 2.0.1
  VSchemaMakeIntrinsic at Base 2.0.1
+ VSchemaMakeRuntimeTable at Base 2.1.0-1
  VSchemaParseFile at Base 2.0.1
  VSchemaParseText at Base 2.0.1
  VSchemaParseTextCallback at Base 2.0.1
@@ -2766,6 +2814,20 @@ libwvdb.so.2 sra-toolkit-libs0 #MINVER#
  VSchemaResolveFmtdecl at Base 2.0.1
  VSchemaResolveTypedecl at Base 2.0.1
  VSchemaResolveTypespec at Base 2.0.1
+ VSchemaRuntimeTableAddAsciiColumn at Base 2.1.0-1
+ VSchemaRuntimeTableAddBooleanColumn at Base 2.1.0-1
+ VSchemaRuntimeTableAddColumn at Base 2.1.0-1
+ VSchemaRuntimeTableAddFloatColumn at Base 2.1.0-1
+ VSchemaRuntimeTableAddIntegerColumn at Base 2.1.0-1
+ VSchemaRuntimeTableAddUnicodeColumn at Base 2.1.0-1
+ VSchemaRuntimeTableClose at Base 2.1.0-1
+ VSchemaRuntimeTableCommit at Base 2.1.0-1
+ VSchemaRuntimeTableVAddAsciiColumn at Base 2.1.0-1
+ VSchemaRuntimeTableVAddBooleanColumn at Base 2.1.0-1
+ VSchemaRuntimeTableVAddColumn at Base 2.1.0-1
+ VSchemaRuntimeTableVAddFloatColumn at Base 2.1.0-1
+ VSchemaRuntimeTableVAddIntegerColumn at Base 2.1.0-1
+ VSchemaRuntimeTableVAddUnicodeColumn at Base 2.1.0-1
  VSchemaSever at Base 2.0.1
  VSchemaToText at Base 2.0.1
  VSchemaTypeMark at Base 2.0.1

-- 
Utilities for the NCBI Sequence Read Archive

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