[med-svn] r7183 - trunk/packages/last-align/trunk/debian

[Charles Plessy]

Author: plessy
Date: 2011-06-30 05:04:33 +0000 (Thu, 30 Jun 2011)
New Revision: 7183

Modified:
   trunk/packages/last-align/trunk/debian/changelog
   trunk/packages/last-align/trunk/debian/control
   trunk/packages/last-align/trunk/debian/copyright
Log:
New upstream release (no new copyright holder or license).


Modified: trunk/packages/last-align/trunk/debian/changelog
===================================================================
--- trunk/packages/last-align/trunk/debian/changelog	2011-06-29 14:40:35 UTC (rev 7182)
+++ trunk/packages/last-align/trunk/debian/changelog	2011-06-30 05:04:33 UTC (rev 7183)
@@ -1,3 +1,9 @@
+last-align (178-1) unstable; urgency=low
+
+  * New upstream release changing format of lastal output (r177).
+
+ -- Charles Plessy <plessy at debian.org>  Thu, 30 Jun 2011 13:53:03 +0900
+
 last-align (171-1) unstable; urgency=low
 
   * New upstream release accepting gcc-4.6.patch (LP: #770770).

Modified: trunk/packages/last-align/trunk/debian/control
===================================================================
--- trunk/packages/last-align/trunk/debian/control	2011-06-29 14:40:35 UTC (rev 7182)
+++ trunk/packages/last-align/trunk/debian/control	2011-06-30 05:04:33 UTC (rev 7183)
@@ -24,8 +24,8 @@
   * Mapping lots of sequence tags onto a genome.
  .
  The main technical innovation is that LAST finds initial matches based on
- their multiplicity, instead of using a fixed size (e.g. BLAST uses 11-mers).
- This allows to map tags to genomes without repeat-masking, without becoming
+ their multiplicity, instead of using a fixed size (e.g. BLAST uses 10-mers).
+ This allows one to map tags to genomes without repeat-masking, without becoming
  overwhelmed by repetitive hits. To find these variable-sized matches, it uses
  a suffix array (inspired by Vmatch). To achieve high sensitivity, it uses a
  discontiguous suffix array, analogous to spaced seeds. 

Modified: trunk/packages/last-align/trunk/debian/copyright
===================================================================
--- trunk/packages/last-align/trunk/debian/copyright	2011-06-29 14:40:35 UTC (rev 7182)
+++ trunk/packages/last-align/trunk/debian/copyright	2011-06-30 05:04:33 UTC (rev 7183)
@@ -1,31 +1,19 @@
 Format: http://dep.debian.net/deps/dep5/
-Source: http://last.cbrc.jp/archive/last-171.zip
+Source: http://last.cbrc.jp/archive/last-178.zip
 
-License: GPL-3+
- This program is free software: you can redistribute it and/or modify
- it under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
- .
- This program is distributed in the hope that it will be useful,
- but WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- GNU General Public License for more details.
- .
- You should have received a copy of the GNU General Public License
- along with this program.  If not, see <http://www.gnu.org/licenses/>.
-
 Files: *
-Copyright: © 2008–2009 Martin C. Frith, Michiaki Hamada and Paul B. Horton <last at cbrc.jp>
+Copyright: © 2008–2011 Martin C. Frith, Michiaki Hamada and Paul B. Horton <last at cbrc.jp>
 License: GPL-3+
 Comment: On Debian systems the full text of the GNU General Public License
  can be found in the `/usr/share/common-licenses/GPL-3' file.
 
+
 Files: CA_code/*
 Copyright: not copyrighted
 License: public-domain
  Public domain code from Yi-Kuo Yu & Stephen Altschul, NCBI 
 
+
 Files: src/gumbel_params/*
 Copyright: not copyrighted
 License: public-domain
@@ -49,22 +37,42 @@
  .
  Please cite the author in any work or product based on this material.
 
+
 Files: CA_code/lambda_calculator.c
 Copyright: © 2008 Michiaki Hamada
 License: GPL-3+
 Comment: Adapted from public domain code by Yi-Kuo Yu, NCBI
 
+
 Files: CA_code/lambda_calculator.h
 Copyright: © 2008 Michiaki Hamada
 License: GPL-3+
 
+
 Files: src/Xdrop3FrameAligner.hh
  src/Xdrop3FrameAligner.cc
  /src/GeneticCode.hh
 Copyright: © 2009 Toshiyuki Sato
 License: GPL-3+
 
+
 Files: debian/*
 Copyright: © 2008–2009,2011 Charles Plessy <plessy at debian.org>
 License: Same
  Same as LAST itself (See above).
+
+
+License: GPL-3+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+ .
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program.  If not, see <http://www.gnu.org/licenses/>.
+