[med-svn] r7190 - in trunk/packages/circos-tools/trunk: . debian debian/patches debian/source
olivier sallou
osallou-guest at alioth.debian.org
Thu Jun 30 11:40:02 UTC 2011
Author: osallou-guest
Date: 2011-06-30 11:40:02 +0000 (Thu, 30 Jun 2011)
New Revision: 7190
Added:
trunk/packages/circos-tools/trunk/debian/
trunk/packages/circos-tools/trunk/debian/README.source
trunk/packages/circos-tools/trunk/debian/changelog
trunk/packages/circos-tools/trunk/debian/circos-tools.install
trunk/packages/circos-tools/trunk/debian/compat
trunk/packages/circos-tools/trunk/debian/control
trunk/packages/circos-tools/trunk/debian/copyright
trunk/packages/circos-tools/trunk/debian/docs
trunk/packages/circos-tools/trunk/debian/patches/
trunk/packages/circos-tools/trunk/debian/patches/debianpackaging
trunk/packages/circos-tools/trunk/debian/patches/series
trunk/packages/circos-tools/trunk/debian/rules
trunk/packages/circos-tools/trunk/debian/source/
trunk/packages/circos-tools/trunk/debian/source/format
trunk/packages/circos-tools/trunk/debian/watch
Log:
[svn-inject] Applying Debian modifications (0.15.1-1) to trunk
Property changes on: trunk/packages/circos-tools/trunk/debian
___________________________________________________________________
Added: mergeWithUpstream
+ 1
Added: trunk/packages/circos-tools/trunk/debian/README.source
===================================================================
--- trunk/packages/circos-tools/trunk/debian/README.source (rev 0)
+++ trunk/packages/circos-tools/trunk/debian/README.source 2011-06-30 11:40:02 UTC (rev 7190)
@@ -0,0 +1,7 @@
+circos for Debian
+-----------------
+
+Remote upstream files (tar.gz) are delivered as full package when name xxx-dd.tar.gz, but patches named xxx-dd-pp.tar.gz contains only modified files. As such, watch/uscan cannot be used for automated update of upstream code. Major delviery should be downloaded, then latest patch should overwrite files.
+
+
+
Added: trunk/packages/circos-tools/trunk/debian/changelog
===================================================================
--- trunk/packages/circos-tools/trunk/debian/changelog (rev 0)
+++ trunk/packages/circos-tools/trunk/debian/changelog 2011-06-30 11:40:02 UTC (rev 7190)
@@ -0,0 +1,5 @@
+circos-tools (0.15.1-1) unstable; urgency=low
+
+ * First debian import (Closes: #632174)
+
+ -- Olivier Sallou <olivier.sallou at irisa.fr> Wed, 29 Jun 2011 12:04:57 +0200
Added: trunk/packages/circos-tools/trunk/debian/circos-tools.install
===================================================================
--- trunk/packages/circos-tools/trunk/debian/circos-tools.install (rev 0)
+++ trunk/packages/circos-tools/trunk/debian/circos-tools.install 2011-06-30 11:40:02 UTC (rev 7190)
@@ -0,0 +1 @@
+tools/* usr/share/circos/tools/
Added: trunk/packages/circos-tools/trunk/debian/compat
===================================================================
--- trunk/packages/circos-tools/trunk/debian/compat (rev 0)
+++ trunk/packages/circos-tools/trunk/debian/compat 2011-06-30 11:40:02 UTC (rev 7190)
@@ -0,0 +1 @@
+8
Added: trunk/packages/circos-tools/trunk/debian/control
===================================================================
--- trunk/packages/circos-tools/trunk/debian/control (rev 0)
+++ trunk/packages/circos-tools/trunk/debian/control 2011-06-30 11:40:02 UTC (rev 7190)
@@ -0,0 +1,17 @@
+Source: circos-tools
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Olivier Sallou <olivier.sallou at irisa.fr>,
+DM-Upload-Allowed: yes
+Build-Depends: debhelper (>= 8.0.0)
+Standards-Version: 3.9.2
+Homepage: http://circos.ca/
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/circos-tools/trunk/
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/circos-tools/?rev=0&sc=0
+
+Package: circos-tools
+Architecture: any
+Depends: ${misc:Depends}, ${perl:Depends}, circos (>= 0.54-1)
+Description: Helper tools for Circos
+ Helper tools designed to aid you in processing your data
Added: trunk/packages/circos-tools/trunk/debian/copyright
===================================================================
--- trunk/packages/circos-tools/trunk/debian/copyright (rev 0)
+++ trunk/packages/circos-tools/trunk/debian/copyright 2011-06-30 11:40:02 UTC (rev 7190)
@@ -0,0 +1,42 @@
+Format: http://dep.debian.net/deps/dep5
+Upstream-Name: circos-tools
+Source: http://circos.ca/
+
+Files: *
+Copyright: Copyright 2004-2011 Martin Krzywinski
+License: GPL-2+
+ This package is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+ .
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>
+ .
+ On Debian systems, the complete text of the GNU General
+ Public License version 2 can be found in "/usr/share/common-licenses/GPL-2".
+
+Files: debian/*
+Copyright: 2011 Olivier Sallou <olivier.sallou at irisa.fr>
+License: GPL-2+
+ This package is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+ .
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>
+ .
+ On Debian systems, the complete text of the GNU General
+ Public License version 2 can be found in "/usr/share/common-licenses/GPL-2".
+
Added: trunk/packages/circos-tools/trunk/debian/docs
===================================================================
Added: trunk/packages/circos-tools/trunk/debian/patches/debianpackaging
===================================================================
--- trunk/packages/circos-tools/trunk/debian/patches/debianpackaging (rev 0)
+++ trunk/packages/circos-tools/trunk/debian/patches/debianpackaging 2011-06-30 11:40:02 UTC (rev 7190)
@@ -0,0 +1,96 @@
+--- a/tools/binlinks/bin/binlinks
++++ b/tools/binlinks/bin/binlinks
+@@ -1,4 +1,4 @@
+-#!/bin/env perl
++#!/usr/bin/env perl
+
+ =pod
+
+--- a/tools/bundlelinks/bin/bundlelinks
++++ b/tools/bundlelinks/bin/bundlelinks
+@@ -1,4 +1,4 @@
+-#!/bin/env perl
++#!/usr/bin/env perl
+
+ =pod
+
+--- a/tools/categoryviewer/bin/parse-category
++++ b/tools/categoryviewer/bin/parse-category
+@@ -1,4 +1,4 @@
+-#!/bin/env perl
++#!/usr/bin/env perl
+
+ =pod
+
+--- a/tools/colorinterpolate/bin/colorinterpolate
++++ b/tools/colorinterpolate/bin/colorinterpolate
+@@ -1,4 +1,4 @@
+-#!/bin/env perl
++#!/usr/bin/env perl
+
+ =pod
+
+--- a/tools/filterlinks/bin/filterlinks
++++ b/tools/filterlinks/bin/filterlinks
+@@ -1,4 +1,4 @@
+-#!/bin/env perl
++#!/usr/bin/env perl
+
+ =pod
+
+--- a/tools/maketutorialimages/bin/make_tutorial_images
++++ b/tools/maketutorialimages/bin/make_tutorial_images
+@@ -1,4 +1,4 @@
+-#!/bin/env perl
++#!/usr/bin/env perl
+
+ =pod
+
+--- a/tools/orderchr/bin/orderchr
++++ b/tools/orderchr/bin/orderchr
+@@ -1,4 +1,4 @@
+-#!/bin/env perl
++#!/usr/bin/env perl
+
+ =pod
+
+--- a/tools/randomlinks/bin/randomlinks
++++ b/tools/randomlinks/bin/randomlinks
+@@ -1,4 +1,4 @@
+-#!/bin/env perl
++#!/usr/bin/env perl
+
+ =pod
+
+--- a/tools/resample/bin/resample
++++ b/tools/resample/bin/resample
+@@ -1,4 +1,4 @@
+-#!/bin/env perl
++#!/usr/bin/env perl
+
+ =pod
+
+--- a/tools/tableviewer/bin/make-conf
++++ b/tools/tableviewer/bin/make-conf
+@@ -1,4 +1,4 @@
+-#!/bin/env perl
++#!/usr/bin/env perl
+
+ =pod
+
+--- a/tools/tableviewer/bin/make-table
++++ b/tools/tableviewer/bin/make-table
+@@ -1,4 +1,4 @@
+-#!/bin/env perl
++#!/usr/bin/env perl
+
+ =pod
+
+--- a/tools/tableviewer/bin/parse-table
++++ b/tools/tableviewer/bin/parse-table
+@@ -1,4 +1,4 @@
+-#!/bin/env perl
++#!/usr/bin/env perl
+
+ =pod
+
Added: trunk/packages/circos-tools/trunk/debian/patches/series
===================================================================
--- trunk/packages/circos-tools/trunk/debian/patches/series (rev 0)
+++ trunk/packages/circos-tools/trunk/debian/patches/series 2011-06-30 11:40:02 UTC (rev 7190)
@@ -0,0 +1 @@
+debianpackaging
Added: trunk/packages/circos-tools/trunk/debian/rules
===================================================================
--- trunk/packages/circos-tools/trunk/debian/rules (rev 0)
+++ trunk/packages/circos-tools/trunk/debian/rules 2011-06-30 11:40:02 UTC (rev 7190)
@@ -0,0 +1,23 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+# Sample debian/rules that uses debhelper.
+# This file was originally written by Joey Hess and Craig Small.
+# As a special exception, when this file is copied by dh-make into a
+# dh-make output file, you may use that output file without restriction.
+# This special exception was added by Craig Small in version 0.37 of dh-make.
+
+# Uncomment this to turn on verbose mode.
+#export DH_VERBOSE=1
+
+%:
+ dh $@
+
+override_dh_install:
+ dh_install
+ # Update circos relative path to absolute debian paths
+ find debian/circos-tools -type f | xargs sed -i 's/include etc/include \/usr\/share\/circos\/etc/g'
+ find debian/circos-tools -type f | xargs sed -i 's/include fonts/include \/usr\/share\/circos\/fonts/g'
+ find debian/circos-tools -type f | xargs sed -i 's/include svg/include \/usr\/share\/circos\/svg/g'
+ find debian/circos-tools -type f | xargs sed -i 's/include tiles/include \/usr\/share\/circos\/tiles/g'
+ find debian/circos-tools -type f | xargs sed -i 's/include data/include \/var\/lib\/circos\/data/g'
+
Property changes on: trunk/packages/circos-tools/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/circos-tools/trunk/debian/source/format
===================================================================
--- trunk/packages/circos-tools/trunk/debian/source/format (rev 0)
+++ trunk/packages/circos-tools/trunk/debian/source/format 2011-06-30 11:40:02 UTC (rev 7190)
@@ -0,0 +1 @@
+3.0 (quilt)
Added: trunk/packages/circos-tools/trunk/debian/watch
===================================================================
--- trunk/packages/circos-tools/trunk/debian/watch (rev 0)
+++ trunk/packages/circos-tools/trunk/debian/watch 2011-06-30 11:40:02 UTC (rev 7190)
@@ -0,0 +1,2 @@
+version=3
+http://circos.ca/distribution/circos-tools-(.*).tar.gz
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