[med-svn] r6125 - trunk/packages/python-cogent/trunk/debian

[Andreas Tille]

Author: tille
Date: 2011-03-01 10:27:27 +0000 (Tue, 01 Mar 2011)
New Revision: 6125

Modified:
   trunk/packages/python-cogent/trunk/debian/changelog
   trunk/packages/python-cogent/trunk/debian/control
Log:
Commit current state of packaging


Modified: trunk/packages/python-cogent/trunk/debian/changelog
===================================================================
--- trunk/packages/python-cogent/trunk/debian/changelog	2011-03-01 10:16:05 UTC (rev 6124)
+++ trunk/packages/python-cogent/trunk/debian/changelog	2011-03-01 10:27:27 UTC (rev 6125)
@@ -1,3 +1,28 @@
+python-cogent (1.5-1) unstable; urgency=low
+
+  * Bumped standard to 3.9.1, no changes required.
+  * New upstream version.
+    - major additions to Cookbook
+    - added AlleleFreqs attribute to ensembl Variation objects.
+    - added getGeneByStableId method to genome objects.
+    - added Introns attribute to Transcript objects and an Intron class.
+    - added Mann-Whitney test and a Monte-Carlo version
+    - exploratory and confirmatory period estimation techniques (suitable for
+      symbolic and continuous data)
+    - Information theoretic measures (AIC and BIC) added
+    - drawing of trees with collapsed nodes
+    - progress display indicator support for terminal and GUI apps
+    - added parser for illumina HiSeq2000 and GAiix sequence files as 
+      cogent.parse.illumina_sequence.MinimalIlluminaSequenceParser.
+    - added parser to FASTQ files, one of the output options for illumina's
+      workflow, also added cookbook demo.
+    - added functionality for parsing of SFF files without the Roche tools in
+      cogent.parse.binary_sff
+    - thousand fold performance improvement to nmds
+    - >10-fold performance improvements to some Table operations
+
+ -- Steffen Moeller <moeller at debian.org>  Sat, 04 Dec 2010 22:30:35 +0100
+
 python-cogent (1.4.1-1.2) unstable; urgency=low
 
   * Non-maintainer upload.

Modified: trunk/packages/python-cogent/trunk/debian/control
===================================================================
--- trunk/packages/python-cogent/trunk/debian/control	2011-03-01 10:16:05 UTC (rev 6124)
+++ trunk/packages/python-cogent/trunk/debian/control	2011-03-01 10:27:27 UTC (rev 6125)
@@ -4,7 +4,7 @@
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Sri Girish Srinivasa Murthy <srigirish at evolbio.mpg.de>, Steffen Moeller <moeller at debian.org>
 Build-Depends: debhelper (>= 7), cdbs, python, python-central, python-numpy (>= 1.3.0), python-all-dev
-Standards-Version: 3.9.0
+Standards-Version: 3.9.1
 Homepage: http://pycogent.sourceforge.net/
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/python-cogent/trunk/?rev=0&sc=0
 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/python-cogent/trunk/