[med-svn] r6137 - in trunk/packages/gbrowse/trunk/debian: . patches

[olivier sallou]

Author: osallou-guest
Date: 2011-03-01 15:48:53 +0000 (Tue, 01 Mar 2011)
New Revision: 6137

Added:
   trunk/packages/gbrowse/trunk/debian/lintian.overrides
Modified:
   trunk/packages/gbrowse/trunk/debian/patches/debian-packaging-patch
Log:
update lintian+patch

Added: trunk/packages/gbrowse/trunk/debian/lintian.overrides
===================================================================
--- trunk/packages/gbrowse/trunk/debian/lintian.overrides	                        (rev 0)
+++ trunk/packages/gbrowse/trunk/debian/lintian.overrides	2011-03-01 15:48:53 UTC (rev 6137)
@@ -0,0 +1,13 @@
+gbrowse: manpage-has-errors-from-man usr/share/man/man3/Bio::DB::GFF::Aggregator::match_gap.3pm.gz 158: warning [p 1, 4.2i]: can't break line
+gbrowse: manpage-has-bad-whatis-entry usr/share/man/man3/Bio::DB::GFF::Aggregator::reftranscript.3pm.gz
+gbrowse: manpage-has-errors-from-pod2man usr/share/man/man3/Bio::Graphics::Browser2::AuthorizedFeatureFile.3pm.gz:142
+gbrowse: manpage-has-errors-from-pod2man usr/share/man/man3/Bio::Graphics::Browser2::DataBase.3pm.gz:145
+gbrowse: manpage-has-bad-whatis-entry usr/share/man/man3/Bio::Graphics::Browser2::DataSource.3pm.gz
+gbrowse: manpage-has-errors-from-pod2man usr/share/man/man3/Bio::Graphics::Browser2::DataSource.3pm.gz:265
+gbrowse: manpage-has-errors-from-man usr/share/man/man3/Bio::Graphics::Browser2::PluginSet.3pm.gz 139: warning [p 1, 1.8i, div `an-div', 0.2i]: can't break line
+gbrowse: manpage-has-bad-whatis-entry usr/share/man/man3/Bio::Graphics::Browser2::Region.3pm.gz
+gbrowse: manpage-has-bad-whatis-entry usr/share/man/man3/Bio::Graphics::Browser2::Render.3pm.gz
+gbrowse: manpage-has-bad-whatis-entry usr/share/man/man3/Bio::Graphics::Browser2::RenderPanels.3pm.gz
+gbrowse: manpage-has-bad-whatis-entry usr/share/man/man3/Legacy::Graphics::Browser.3pm.gz
+gbrowse: binary-without-manpage usr/bin/gbrowse_syn_load_alignment_database
+gbrowse: binary-without-manpage usr/bin/gbrowse_syn_load_alignments_msa

Modified: trunk/packages/gbrowse/trunk/debian/patches/debian-packaging-patch
===================================================================
--- trunk/packages/gbrowse/trunk/debian/patches/debian-packaging-patch	2011-03-01 14:57:25 UTC (rev 6136)
+++ trunk/packages/gbrowse/trunk/debian/patches/debian-packaging-patch	2011-03-01 15:48:53 UTC (rev 6137)
@@ -330,3 +330,23 @@
 +.SH AUTHOR
 +Olivier Sallou (olivier.sallou (at) irisa.fr) - Man page and packaging
 +Lincoln Stein - GBrowse
+--- a/lib/Bio/DB/GFF/Aggregator/match_gap.pm
++++ b/lib/Bio/DB/GFF/Aggregator/match_gap.pm
+@@ -34,7 +34,6 @@
+ should be sufficient for simple nucleotide to nucleotide
+ alignments.
+ 
+-################################################################################
+ 
+ =cut
+ 
+--- a/lib/Bio/DB/GFF/Aggregator/reftranscript.pm
++++ b/lib/Bio/DB/GFF/Aggregator/reftranscript.pm
+@@ -1,6 +1,6 @@
+ =head1 NAME
+ 
+-package Bio::DB::GFF::Aggregator::reftranscript -- Aggregates references transcripts
++Bio::DB::GFF::Aggregator::reftranscript -- Aggregates references transcripts
+ 
+ =head1 SYNOPSIS
+