[med-svn] r6149 - in trunk/packages/qiime/trunk/debian: . patches

[Steffen Möller]

Author: moeller
Date: 2011-03-02 21:35:05 +0000 (Wed, 02 Mar 2011)
New Revision: 6149

Added:
   trunk/packages/qiime/trunk/debian/compat
   trunk/packages/qiime/trunk/debian/patches/
   trunk/packages/qiime/trunk/debian/patches/python26_trim_sff_primers.patch
   trunk/packages/qiime/trunk/debian/patches/series
Modified:
   trunk/packages/qiime/trunk/debian/changelog
Log:
Fixed python 2.6 incompatibility


Modified: trunk/packages/qiime/trunk/debian/changelog
===================================================================
--- trunk/packages/qiime/trunk/debian/changelog	2011-03-02 18:18:31 UTC (rev 6148)
+++ trunk/packages/qiime/trunk/debian/changelog	2011-03-02 21:35:05 UTC (rev 6149)
@@ -1,6 +1,12 @@
+qiime (1.2.1-2) experimental; urgency=low
+
+  * Initial release (Closes: #587275)
+  * Fixed Python 2.6 incompatibility.
+
+ -- Steffen Moeller <moeller at debian.org>  Wed, 02 Mar 2011 22:33:45 +0100
+
 qiime (1.2.1-1) experimental; urgency=low
 
-  * Initial release (Closes: #587275)
   * Corrected home page
   * Updated policy to 3.9.1
   * Updated debian/README.Debian

Added: trunk/packages/qiime/trunk/debian/compat
===================================================================
--- trunk/packages/qiime/trunk/debian/compat	                        (rev 0)
+++ trunk/packages/qiime/trunk/debian/compat	2011-03-02 21:35:05 UTC (rev 6149)
@@ -0,0 +1 @@
+5

Added: trunk/packages/qiime/trunk/debian/patches/python26_trim_sff_primers.patch
===================================================================
--- trunk/packages/qiime/trunk/debian/patches/python26_trim_sff_primers.patch	                        (rev 0)
+++ trunk/packages/qiime/trunk/debian/patches/python26_trim_sff_primers.patch	2011-03-02 21:35:05 UTC (rev 6149)
@@ -0,0 +1,15 @@
+Index: Qiime-1.2.1/qiime/trim_sff_primers.py
+===================================================================
+--- Qiime-1.2.1.orig/qiime/trim_sff_primers.py	2011-03-02 22:27:48.000000000 +0100
++++ Qiime-1.2.1/qiime/trim_sff_primers.py	2011-03-02 22:29:00.000000000 +0100
+@@ -101,8 +101,8 @@
+         clipped_header, clipped_reads = set_clip_qual_left(sff_data, readlength)
+         
+         _, temp_fp = tempfile.mkstemp(dir=sff_dir)
+-        with open(temp_fp, 'w') as f:
+-            write_binary_sff(f, clipped_header, clipped_reads)
++        f = open(temp_fp, 'w')
++        write_binary_sff(f, clipped_header, clipped_reads)
+ 
+         shutil.move(temp_fp, sff_fp)
+ 

Added: trunk/packages/qiime/trunk/debian/patches/series
===================================================================
--- trunk/packages/qiime/trunk/debian/patches/series	                        (rev 0)
+++ trunk/packages/qiime/trunk/debian/patches/series	2011-03-02 21:35:05 UTC (rev 6149)
@@ -0,0 +1 @@
+python26_trim_sff_primers.patch