[med-svn] r6256 - trunk/packages/maq/trunk/debian

[Charles Plessy]

Author: plessy
Date: 2011-03-13 03:12:46 +0000 (Sun, 13 Mar 2011)
New Revision: 6256

Added:
   trunk/packages/maq/trunk/debian/upstream-metadata.yaml
Modified:
   trunk/packages/maq/trunk/debian/changelog
   trunk/packages/maq/trunk/debian/compat
   trunk/packages/maq/trunk/debian/control
   trunk/packages/maq/trunk/debian/maq.doc-base
Log:
maq (0.7.1-4) unstable; urgency=low

  * Development of Maq stopped in 2008. Its successors are BWA and SAMtools.
    (debian/control, debian/maq.doc-base).
  * DEP-5 conformant debian/copyright file, checked with ?\226?\128?\152config-edit?\226?\128?\153.
  * Use Debhelper 8 (debian/control, debian/compat).
  * Collected various information in debian/upstream-metadata.yaml.
  * Incremented Standards-Version in debian/policy to reflect
    conformance with Policy 3.9.1 (no changes needed).

 -- Charles Plessy <plessy at debian.org>  Sun, 13 Mar 2011 11:35:38 +0900


Modified: trunk/packages/maq/trunk/debian/changelog
===================================================================
--- trunk/packages/maq/trunk/debian/changelog	2011-03-13 01:26:28 UTC (rev 6255)
+++ trunk/packages/maq/trunk/debian/changelog	2011-03-13 03:12:46 UTC (rev 6256)
@@ -1,8 +1,14 @@
-maq (0.7.1-4) UNRELEASED; urgency=low
+maq (0.7.1-4) unstable; urgency=low
 
-  * Developmemt of Maq stopped in 2008. Its successors are BWA and SAMtools.
+  * Development of Maq stopped in 2008. Its successors are BWA and SAMtools.
+    (debian/control, debian/maq.doc-base).
+  * DEP-5 conformant debian/copyright file, checked with ‘config-edit’.
+  * Use Debhelper 8 (debian/control, debian/compat).
+  * Collected various information in debian/upstream-metadata.yaml.
+  * Incremented Standards-Version in debian/policy to reflect
+    conformance with Policy 3.9.1 (no changes needed).
 
- -- Charles Plessy <plessy at debian.org>  Mon, 01 Nov 2010 19:10:28 +0900
+ -- Charles Plessy <plessy at debian.org>  Sun, 13 Mar 2011 11:35:38 +0900
 
 maq (0.7.1-3) unstable; urgency=low
 

Modified: trunk/packages/maq/trunk/debian/compat
===================================================================
--- trunk/packages/maq/trunk/debian/compat	2011-03-13 01:26:28 UTC (rev 6255)
+++ trunk/packages/maq/trunk/debian/compat	2011-03-13 03:12:46 UTC (rev 6256)
@@ -1 +1 @@
-7
+8

Modified: trunk/packages/maq/trunk/debian/control
===================================================================
--- trunk/packages/maq/trunk/debian/control	2011-03-13 01:26:28 UTC (rev 6255)
+++ trunk/packages/maq/trunk/debian/control	2011-03-13 03:12:46 UTC (rev 6256)
@@ -5,8 +5,8 @@
 DM-Upload-Allowed: yes
 Uploaders: Andreas Tille <tille at debian.org>,
  Charles Plessy <plessy at debian.org>
-Build-Depends: cdbs, debhelper (>= 7), autotools-dev, zlib1g-dev, quilt
-Standards-Version: 3.8.2
+Build-Depends: cdbs, debhelper (>= 8), autotools-dev, zlib1g-dev, quilt
+Standards-Version: 3.9.1
 Homepage: http://maq.sourceforge.net/
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/maq/trunk/?rev=0&sc=0
 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/maq/trunk/
@@ -14,6 +14,7 @@
 Package: maq
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}
+Suggests: bwa, samtools
 Description: maps short fixed-length polymorphic DNA sequence reads to reference sequences
  Maq (short for Mapping and Assembly with Quality) builds mapping assemblies
  from short reads generated by the next-generation sequencing machines. It was

Modified: trunk/packages/maq/trunk/debian/maq.doc-base
===================================================================
--- trunk/packages/maq/trunk/debian/maq.doc-base	2011-03-13 01:26:28 UTC (rev 6255)
+++ trunk/packages/maq/trunk/debian/maq.doc-base	2011-03-13 03:12:46 UTC (rev 6256)
@@ -2,6 +2,8 @@
 Title: Maq — Mapping and Assembly with Quality
 Author: Heng Li <lh3 at sanger.ac.uk>
 Abstract: Maq manual page in PDF format
+ Note that Developmemt of Maq stopped in 2008. Its successors are BWA
+ and SAMtools.
 Section: Science/Biology
 
 Format: PDF

Added: trunk/packages/maq/trunk/debian/upstream-metadata.yaml
===================================================================
--- trunk/packages/maq/trunk/debian/upstream-metadata.yaml	                        (rev 0)
+++ trunk/packages/maq/trunk/debian/upstream-metadata.yaml	2011-03-13 03:12:46 UTC (rev 6256)
@@ -0,0 +1,20 @@
+Archive: SourceForge
+Contact: Heng Li <lh3 at sanger.ac.uk>
+DOI: 10.1101/gr.078212.108
+FAQ: http://maq.sourceforge.net/faq.shtml
+Name: Maq
+Homepage: http://maq.sourceforge.net/
+PMID: 18714091
+Reference:
+ author: Li, Heng and Ruan, Jue and Durbin, Richard
+ title: Mapping short DNA sequencing reads and calling variants using mapping quality scores
+ journal: Genome Research
+ volume: 18
+ number: 11
+ pages: 1851-1858
+ doi: 10.1101/gr.078212.108
+ year: 2008
+ URL: http://genome.cshlp.org/content/18/11/1851.abstract
+ eprint: http://genome.cshlp.org/content/18/11/1851.full.pdf+html
+Watch: |
+ http://sf.net/maq/maq-([\d\.]+)\.tar\.bz2