[med-svn] [SCM] Processing of sequence alignments in SAM and BAM formats. branch, master, updated. 0.1.13-5-gced7709

[Charles Plessy]

The following commit has been merged in the master branch:
commit 12a7719882d22ff203f07cfbf274e61dd5d9c9bd
Author: Charles Plessy <plessy at debian.org>
Date:   Tue Mar 29 13:08:26 2011 +0900

     # New upstream release (new copyright notices and licenses proofchecked).

diff --git a/debian/changelog b/debian/changelog
index 88dfe34..7e033bd 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+samtools (0.1.14-1) UNRELEASED; urgency=low
+
+  * New upstream release.
+
+ -- Charles Plessy <plessy at debian.org>  Tue, 29 Mar 2011 13:06:24 +0900
+
 samtools (0.1.13-1) unstable; urgency=low
 
   * New upstream release:
diff --git a/debian/copyright b/debian/copyright
index 2756f44..c2b0da1 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -1,7 +1,11 @@
-Format: DEP-5 (beta)
-Source: http://qa.debian.org/watch/sf.php/samtools/samtools-0.1.12a.tar.bz2
+Format: http://dep.debian.net/deps/dep5/
+Source: http://qa.debian.org/watch/sf.php/samtools/samtools-0.1.14.tar.bz2
+
+Files: *
 Copyright:  © 2008–2010, Genome Research Ltd. (GRL)
 License: MIT
+
+License: MIT
  Permission is hereby granted, free of charge, to any person obtaining a copy
  of this software and associated documentation files (the "Software"), to deal
  in the Software without restriction, including without limitation the rights
@@ -28,7 +32,7 @@ Files: bcftools/bcf.h
 Copyright: © 2010 Broad Institute
 License: MIT
 
-Files: misc/export2sam.pl
+Files: misc/export2sam.pl, bam_cat.c
 Copyright: © 2008–2009, Genome Research Ltd.
 Copyright: © 2010 Illumina, Inc.
 License: MIT
@@ -49,7 +53,7 @@ License: MIT
 Files: razf.*
 Name: RAZF : Random Access compressed(Z) File
 Copyright: 2008, Jue Ruan <ruanjue at gmail.com>, Heng Li <lh3 at sanger.ac.uk>
-License: Similar to NetBSD license.
+License: NetBSD-similar
  Redistribution and use in source and binary forms, with or without
  modification, are permitted provided that the following conditions
  are met:
@@ -72,7 +76,8 @@ License: Similar to NetBSD license.
  SUCH DAMAGE.
 
 Files: misc/md5.*
-License:
+Copyright: no copyright is claimed
+License: MD5-fourmilab
  This code implements the MD5 message-digest algorithm.
  The algorithm is due to Ron Rivest. This code was
  written by Colin Plumb in 1993, no copyright is claimed.
@@ -89,7 +94,8 @@ License:
  will fill a supplied 16-byte array with the digest.
 
 Files: win32/xcurses.h
-License: Public Domain
+Copyright: Public Domain
+License: public-domain
  This file is part of PDCurses (http://pdcurses.sourceforge.net/),
  which is in the public domain.
 

-- 
Processing of sequence alignments in SAM and BAM formats.