[med-svn] [SCM] sra-sdk branch, master, updated. upstream/2.0.0_rc1-19-g063278a

Charles Plessy plessy at debian.org
Thu Mar 31 04:55:38 UTC 2011 

The following commit has been merged in the master branch:
commit 063278a0bcefe7ea885c3e32e3b0ba8e4ad6be45
Author: Charles Plessy <plessy at debian.org>
Date:   Thu Mar 31 13:54:55 2011 +0900

     # Copyright review done.

diff --git a/debian/copyright b/debian/copyright
index b27026e..7cd6b7c 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -1,37 +1,208 @@
-This work was packaged for Debian by:
+Format: http://dep.debian.net/deps/dep5/
+Source: http://trace.ncbi.nlm.nih.gov/Traces/sra/static/sra_sdk-2.0.0rc5.tar.gz
 
-    Charles Plessy <plessy at debian.org> on Wed, 15 Dec 2010 20:03:11 +0900
+Files: *
+Copyright: none claimed
+License: public-domain
+                           PUBLIC DOMAIN NOTICE
+              National Center for Biotechnology Information
+ .
+ This software/database is a "United States Government Work" under the
+ terms of the United States Copyright Act.  It was written as part of
+ the author's official duties as a United States Government employee and
+ thus cannot be copyrighted.  This software/database is freely available
+ to the public for use. The National Library of Medicine and the U.S.
+ Government have not placed any restriction on its use or reproduction.
+ .
+ Although all reasonable efforts have been taken to ensure the accuracy
+ and reliability of the software and data, the NLM and the U.S.
+ Government do not and cannot warrant the performance or results that
+ may be obtained by using this software or data. The NLM and the U.S.
+ Government disclaim all warranties, express or implied, including
+ warranties of performance, merchantability or fitness for any particular
+ purpose.
+ .
+ Please cite the author in any work or product based on this material.
 
-It was downloaded from:
+Files: interfaces/ext/bzlib.h
+Copyright: © 1996-2010 Julian Seward <jseward at bzip.org>
+Comment: This file is part of bzip2/libbzip2, a program and library for
+ lossless, block-sorting data compression.
+ .
+  bzip2/libbzip2 version 1.0.6 of 6 September 2010
+  Copyright (C) 1996-2010 Julian Seward <jseward at bzip.org>
+ .
+ Please read the WARNING, DISCLAIMER and PATENTS sections in the 
+ README file.
+ .
+ This program is released under the terms of the license contained
+ in the file LICENSE.
+License: bzip2
+ This program, "bzip2", the associated library "libbzip2", and all
+ documentation, are copyright (C) 1996-2010 Julian R Seward.  All
+ rights reserved.
+ .
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions
+ are met:
+ .
+  1. Redistributions of source code must retain the above copyright
+     notice, this list of conditions and the following disclaimer.
+ .
+  2. The origin of this software must not be misrepresented; you must 
+     not claim that you wrote the original software.  If you use this 
+     software in a product, an acknowledgment in the product 
+     documentation would be appreciated but is not required.
+ .
+  3. Altered source versions must be plainly marked as such, and must
+     not be misrepresented as being the original software.
+ .
+  4. The name of the author may not be used to endorse or promote 
+     products derived from this software without specific prior written 
+     permission.
+ .
+ THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS
+ OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
+ WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ ARE DISCLAIMED.  IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY
+ DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+ DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE
+ GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
+ INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
+ WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
+ NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
+ SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+ .
+ Julian Seward, jseward at bzip.org
+ bzip2/libbzip2 version 1.0.6 of 6 September 2010
 
-    <url://example.com>
+Files: interfaces/ext/magic.h
+Copyright: © Christos Zoulas 2003.
+License: magic
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions
+ are met:
+  1. Redistributions of source code must retain the above copyright
+     notice immediately at the beginning of the file, without modification,
+     this list of conditions, and the following disclaimer.
+  2. Redistributions in binary form must reproduce the above copyright
+     notice, this list of conditions and the following disclaimer in the
+     documentation and/or other materials provided with the distribution.
+ .
+ THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND
+ ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+ IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE FOR
+ ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+ DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS
+ OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
+ HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
+ LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
+ OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF
+ SUCH DAMAGE.
 
-Upstream Author(s):
+Files: interfaces/ext/zconf.h
+Copyright: © 1995-2010 Jean-loup Gailly.
+Comment: zconf.h -- configuration of the zlib compression library
+ Copyright (C) 1995-2010 Jean-loup Gailly.
+ For conditions of distribution and use, see copyright notice in zlib.h
+License: zlib
+ This software is provided 'as-is', without any express or implied
+ warranty.  In no event will the authors be held liable for any damages
+ arising from the use of this software.
+ .
+ Permission is granted to anyone to use this software for any purpose,
+ including commercial applications, and to alter it and redistribute it
+ freely, subject to the following restrictions:
+ .
+  1. The origin of this software must not be misrepresented; you must not
+     claim that you wrote the original software. If you use this software
+     in a product, an acknowledgment in the product documentation would be
+     appreciated but is not required.
+  2. Altered source versions must be plainly marked as such, and must not be
+     misrepresented as being the original software.
+  3. This notice may not be removed or altered from any source distribution.
+ .
+  Jean-loup Gailly        Mark Adler
+  jloup at gzip.org          madler at alumni.caltech.edu
+ .
+ .
+ The data format used by the zlib library is described by RFCs (Request for
+ Comments) 1950 to 1952 in the files http://www.ietf.org/rfc/rfc1950.txt
+ (zlib format), rfc1951.txt (deflate format) and rfc1952.txt (gzip format).
 
-    <put author's name and email here>
-    <likewise for another author>
+Files: interfaces/ext/regex.h
+Copyright: © 1985,1989-93,1995-98,2000,2001,2002,2003,2005,2006 Free Software Foundation, Inc.
+License: LGPL-2.1+
 
-Copyright:
+Files: libs/klib/bsearch.c
+Copyright: © 1991,92,97,2000,02 Free Software Foundation, Inc.
+License: LGPL-2.1+
 
-    <Copyright (C) YYYY Firstname Lastname>
-    <likewise for another author>
+Files: libs/klib/qsort.c
+Copyright: © 1991,1992,1996,1997,1999,2004 Free Software Foundation, Inc.
+License: LGPL-2.1+
 
-License:
+License: LGPL-2.1+
+ The GNU C Library is free software; you can redistribute it and/or
+ modify it under the terms of the GNU Lesser General Public
+ License as published by the Free Software Foundation; either
+ version 2.1 of the License, or (at your option) any later version.
+ .
+ The GNU C Library is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ Lesser General Public License for more details.
+ .
+ You should have received a copy of the GNU Lesser General Public
+ License along with the GNU C Library; if not, write to the Free
+ Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA
+ 02111-1307 USA.
+Comment: On Debian systems, the full text of the GNU Lesser General Public
+ version 2.1 is accessible in the file ‘/usr/share/common-licenses/LGPL-2.1’.
 
-    <Put the license of the package here indented by 4 spaces>
-
-The Debian packaging is:
-
-    Copyright (C) 2010 Charles Plessy <plessy at debian.org>
-
-# Please chose a license for your packaging work. If the program you package
-# uses a mainstream license, using the same license is the safest choice.
-# Please avoid to pick license terms that are more restrictive than the
-# packaged work, as it may make Debian's contributions unacceptable upstream.
-# If you just want it to be GPL version 3, leave the following lines in.
-
-and is licensed under the GPL version 3,
-see "/usr/share/common-licenses/GPL-3".
-
-# Please also look if there are files or directories which have a
-# different copyright/license attached and list them here.
+Files: libs/klib/md5.c
+Copyright: © 1999 Aladdin Enterprises.
+License: Alladdin
+ This software is provided 'as-is', without any express or implied
+ warranty.  In no event will the authors be held liable for any damages
+ arising from the use of this software.
+ .
+ Permission is granted to anyone to use this software for any purpose,
+ including commercial applications, and to alter it and redistribute it
+ freely, subject to the following restrictions:
+ .
+  1. The origin of this software must not be misrepresented; you must not
+     claim that you wrote the original software. If you use this software
+     in a product, an acknowledgment in the product documentation would be
+     appreciated but is not required.
+  2. Altered source versions must be plainly marked as such, and must not be
+     misrepresented as being the original software.
+  3. This notice may not be removed or altered from any source distribution.
+ .
+ L. Peter Deutsch
+ ghost at aladdin.com
+Comment: Independent implementation of MD5 (RFC 1321).
+ .
+ This code implements the MD5 Algorithm defined in RFC 1321.
+ It is derived directly from the text of the RFC and not from the
+ reference implementation.
+ .
+ The original and principal author of md5.c is L. Peter Deutsch
+ <ghost at aladdin.com>.  Other authors are noted in the change history
+ that follows (in reverse chronological order):
+ .
+ 1999-11-04 lpd Edited comments slightly for automatic TOC extraction.
+ 1999-10-18 lpd Fixed typo in header comment (ansi2knr rather than md5).
+ 1999-05-03 lpd Original version.
+Disclaimer: This software is derived from original work by Peter Deutsch.
+ It has been incorporated into a body of PUBLIC DOMAIN software
+ distributed by the National Center for Biotechnology Information.
+ .
+ Although all reasonable efforts have been taken to ensure the accuracy
+ and reliability of the software and data, the NLM and the U.S.
+ Government do not and cannot warrant the performance or results that
+ may be obtained by using this software or data. The NLM and the U.S.
+ Government disclaim all warranties, express or implied, including
+ warranties of performance, merchantability or fitness for any particular
+ purpose.

-- 
Utilities for the NCBI Sequence Read Archive

More information about the debian-med-commit mailing list